data_1CCC # _model_server_result.job_id eTfCV09B-UnK-irt28o4_g _model_server_result.datetime_utc '2024-10-13 04:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ccc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":295}' # _entry.id 1CCC # _exptl.entry_id 1CCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CCC _cell.length_a 105.2 _cell.length_b 74.3 _cell.length_c 45.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 178 A HIS 175 1_555 B FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 B FE HEM . A HEM 295 1_555 C O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CCC _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 295 1 HEM HEM . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 301 301 HOH HOH . C 3 HOH A 3 302 302 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 344 344 HOH HOH . C 3 HOH A 44 345 345 HOH HOH . C 3 HOH A 45 346 346 HOH HOH . C 3 HOH A 46 347 347 HOH HOH . C 3 HOH A 47 348 348 HOH HOH . C 3 HOH A 48 349 349 HOH HOH . C 3 HOH A 49 350 350 HOH HOH . C 3 HOH A 50 351 351 HOH HOH . C 3 HOH A 51 352 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.551 53.892 112.957 1 14.72 ? CHA HEM 295 A 1 HETATM 2 C CHB HEM . . . B 2 -7.582 57.995 114.479 1 12.46 ? CHB HEM 295 A 1 HETATM 3 C CHC HEM . . . B 2 -6.051 60.051 110.455 1 8.85 ? CHC HEM 295 A 1 HETATM 4 C CHD HEM . . . B 2 -3.606 56.143 109.236 1 13.37 ? CHD HEM 295 A 1 HETATM 5 C C1A HEM . . . B 2 -6.256 54.818 113.741 1 16.64 ? C1A HEM 295 A 1 HETATM 6 C C2A HEM . . . B 2 -6.747 54.522 114.978 1 14.61 ? C2A HEM 295 A 1 HETATM 7 C C3A HEM . . . B 2 -7.371 55.7 115.428 1 10.93 ? C3A HEM 295 A 1 HETATM 8 C C4A HEM . . . B 2 -7.164 56.651 114.442 1 13.59 ? C4A HEM 295 A 1 HETATM 9 C CMA HEM . . . B 2 -8.086 55.956 116.762 1 13.3 ? CMA HEM 295 A 1 HETATM 10 C CAA HEM . . . B 2 -6.553 53.157 115.632 1 14.02 ? CAA HEM 295 A 1 HETATM 11 C CBA HEM . . . B 2 -5.476 53.072 116.681 1 13.94 ? CBA HEM 295 A 1 HETATM 12 C CGA HEM . . . B 2 -5.338 51.676 117.3 1 19.99 ? CGA HEM 295 A 1 HETATM 13 O O1A HEM . . . B 2 -6.184 51.244 118.071 1 20.14 ? O1A HEM 295 A 1 HETATM 14 O O2A HEM . . . B 2 -4.374 50.963 117.069 1 20.56 ? O2A HEM 295 A 1 HETATM 15 C C1B HEM . . . B 2 -7.439 58.947 113.445 1 13.37 ? C1B HEM 295 A 1 HETATM 16 C C2B HEM . . . B 2 -8.009 60.231 113.431 1 16.42 ? C2B HEM 295 A 1 HETATM 17 C C3B HEM . . . B 2 -7.608 60.79 112.216 1 15.45 ? C3B HEM 295 A 1 HETATM 18 C C4B HEM . . . B 2 -6.791 59.833 111.615 1 12.4 ? C4B HEM 295 A 1 HETATM 19 C CMB HEM . . . B 2 -8.955 60.766 114.492 1 12.48 ? CMB HEM 295 A 1 HETATM 20 C CAB HEM . . . B 2 -7.873 62.019 111.592 1 17.06 ? CAB HEM 295 A 1 HETATM 21 C CBB HEM . . . B 2 -8.696 63.097 112.034 1 12.64 ? CBB HEM 295 A 1 HETATM 22 C C1C HEM . . . B 2 -5.174 59.214 109.761 1 15.18 ? C1C HEM 295 A 1 HETATM 23 C C2C HEM . . . B 2 -4.391 59.621 108.681 1 13.56 ? C2C HEM 295 A 1 HETATM 24 C C3C HEM . . . B 2 -3.586 58.503 108.416 1 14.22 ? C3C HEM 295 A 1 HETATM 25 C C4C HEM . . . B 2 -4.037 57.471 109.254 1 13.64 ? C4C HEM 295 A 1 HETATM 26 C CMC HEM . . . B 2 -4.411 61.018 108.022 1 11.39 ? CMC HEM 295 A 1 HETATM 27 C CAC HEM . . . B 2 -2.583 58.321 107.461 1 12.67 ? CAC HEM 295 A 1 HETATM 28 C CBC HEM . . . B 2 -2.38 59.068 106.226 1 18.16 ? CBC HEM 295 A 1 HETATM 29 C C1D HEM . . . B 2 -3.969 55.112 110.1 1 16.05 ? C1D HEM 295 A 1 HETATM 30 C C2D HEM . . . B 2 -3.707 53.769 109.892 1 17.1 ? C2D HEM 295 A 1 HETATM 31 C C3D HEM . . . B 2 -4.284 53.11 110.969 1 19.47 ? C3D HEM 295 A 1 HETATM 32 C C4D HEM . . . B 2 -4.859 54.103 111.761 1 16.08 ? C4D HEM 295 A 1 HETATM 33 C CMD HEM . . . B 2 -2.951 53.119 108.756 1 17.85 ? CMD HEM 295 A 1 HETATM 34 C CAD HEM . . . B 2 -4.239 51.602 111.251 1 17.38 ? CAD HEM 295 A 1 HETATM 35 C CBD HEM . . . B 2 -3.022 51.189 112.088 1 14.65 ? CBD HEM 295 A 1 HETATM 36 C CGD HEM . . . B 2 -3.017 49.736 112.53 1 16.78 ? CGD HEM 295 A 1 HETATM 37 O O1D HEM . . . B 2 -2.521 49.411 113.591 1 16.23 ? O1D HEM 295 A 1 HETATM 38 O O2D HEM . . . B 2 -3.525 48.903 111.799 1 15.87 ? O2D HEM 295 A 1 HETATM 39 N NA HEM . . . B 2 -6.505 56.102 113.416 1 12.94 ? NA HEM 295 A 1 HETATM 40 N NB HEM . . . B 2 -6.791 58.703 112.305 1 13.48 ? NB HEM 295 A 1 HETATM 41 N NC HEM . . . B 2 -4.982 57.915 110.076 1 13.04 ? NC HEM 295 A 1 HETATM 42 N ND HEM . . . B 2 -4.679 55.3 111.215 1 16.75 ? ND HEM 295 A 1 HETATM 43 FE FE HEM . . . B 2 -5.764 57.006 111.726 1 14.23 ? FE HEM 295 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #