data_1CCG # _model_server_result.job_id w7vFvDIPXbNwNVBUQnYOjw _model_server_result.datetime_utc '2025-07-31 23:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ccg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1CCG # _exptl.entry_id 1CCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CCG _cell.length_a 105.2 _cell.length_b 74.3 _cell.length_c 45.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B FE HEM . A HEM 1 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 B FE HEM . A HEM 1 1_555 C N3 IMD . A IMD 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CCG _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1 1 HEM HEM . C 3 IMD A 1 575 575 IMD IMD . D 4 HOH A 1 300 300 HOH HOH . D 4 HOH A 2 301 301 HOH HOH . D 4 HOH A 3 302 302 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 327 327 HOH HOH . D 4 HOH A 27 328 328 HOH HOH . D 4 HOH A 28 329 329 HOH HOH . D 4 HOH A 29 330 330 HOH HOH . D 4 HOH A 30 331 331 HOH HOH . D 4 HOH A 31 332 332 HOH HOH . D 4 HOH A 32 333 333 HOH HOH . D 4 HOH A 33 334 334 HOH HOH . D 4 HOH A 34 335 335 HOH HOH . D 4 HOH A 35 336 336 HOH HOH . D 4 HOH A 36 337 337 HOH HOH . D 4 HOH A 37 338 338 HOH HOH . D 4 HOH A 38 339 339 HOH HOH . D 4 HOH A 39 340 340 HOH HOH . D 4 HOH A 40 341 341 HOH HOH . D 4 HOH A 41 342 342 HOH HOH . D 4 HOH A 42 344 344 HOH HOH . D 4 HOH A 43 345 345 HOH HOH . D 4 HOH A 44 346 346 HOH HOH . D 4 HOH A 45 347 347 HOH HOH . D 4 HOH A 46 348 348 HOH HOH . D 4 HOH A 47 349 349 HOH HOH . D 4 HOH A 48 350 350 HOH HOH . D 4 HOH A 49 351 351 HOH HOH . D 4 HOH A 50 352 352 HOH HOH . D 4 HOH A 51 353 353 HOH HOH . D 4 HOH A 52 354 354 HOH HOH . D 4 HOH A 53 355 355 HOH HOH . D 4 HOH A 54 356 356 HOH HOH . D 4 HOH A 55 357 357 HOH HOH . D 4 HOH A 56 358 358 HOH HOH . D 4 HOH A 57 359 359 HOH HOH . D 4 HOH A 58 360 360 HOH HOH . D 4 HOH A 59 361 361 HOH HOH . D 4 HOH A 60 362 362 HOH HOH . D 4 HOH A 61 363 363 HOH HOH . D 4 HOH A 62 364 364 HOH HOH . D 4 HOH A 63 365 365 HOH HOH . D 4 HOH A 64 366 366 HOH HOH . D 4 HOH A 65 367 367 HOH HOH . D 4 HOH A 66 368 368 HOH HOH . D 4 HOH A 67 369 369 HOH HOH . D 4 HOH A 68 370 370 HOH HOH . D 4 HOH A 69 371 371 HOH HOH . D 4 HOH A 70 372 372 HOH HOH . D 4 HOH A 71 373 373 HOH HOH . D 4 HOH A 72 374 374 HOH HOH . D 4 HOH A 73 375 375 HOH HOH . D 4 HOH A 74 376 376 HOH HOH . D 4 HOH A 75 377 377 HOH HOH . D 4 HOH A 76 378 378 HOH HOH . D 4 HOH A 77 379 379 HOH HOH . D 4 HOH A 78 380 380 HOH HOH . D 4 HOH A 79 381 381 HOH HOH . D 4 HOH A 80 382 382 HOH HOH . D 4 HOH A 81 383 383 HOH HOH . D 4 HOH A 82 384 384 HOH HOH . D 4 HOH A 83 385 385 HOH HOH . D 4 HOH A 84 386 386 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.506 53.923 112.93 1 10.4 ? CHA HEM 1 A 1 HETATM 2 C CHB HEM . . . B 2 -7.562 57.972 114.378 1 12.83 ? CHB HEM 1 A 1 HETATM 3 C CHC HEM . . . B 2 -5.926 60.126 110.472 1 10.67 ? CHC HEM 1 A 1 HETATM 4 C CHD HEM . . . B 2 -3.654 56.114 109.164 1 12.48 ? CHD HEM 1 A 1 HETATM 5 C C1A HEM . . . B 2 -6.228 54.827 113.698 1 13.72 ? C1A HEM 1 A 1 HETATM 6 C C2A HEM . . . B 2 -6.758 54.532 114.942 1 13.8 ? C2A HEM 1 A 1 HETATM 7 C C3A HEM . . . B 2 -7.395 55.715 115.374 1 10.06 ? C3A HEM 1 A 1 HETATM 8 C C4A HEM . . . B 2 -7.147 56.642 114.369 1 13.2 ? C4A HEM 1 A 1 HETATM 9 C CMA HEM . . . B 2 -8.23 55.922 116.645 1 11.85 ? CMA HEM 1 A 1 HETATM 10 C CAA HEM . . . B 2 -6.626 53.173 115.641 1 12.81 ? CAA HEM 1 A 1 HETATM 11 C CBA HEM . . . B 2 -5.472 53.012 116.584 1 14.69 ? CBA HEM 1 A 1 HETATM 12 C CGA HEM . . . B 2 -5.394 51.617 117.224 1 20.48 ? CGA HEM 1 A 1 HETATM 13 O O1A HEM . . . B 2 -6.246 51.26 118.04 1 22.92 ? O1A HEM 1 A 1 HETATM 14 O O2A HEM . . . B 2 -4.475 50.847 116.942 1 21.25 ? O2A HEM 1 A 1 HETATM 15 C C1B HEM . . . B 2 -7.381 58.932 113.376 1 12.86 ? C1B HEM 1 A 1 HETATM 16 C C2B HEM . . . B 2 -7.941 60.211 113.411 1 12.93 ? C2B HEM 1 A 1 HETATM 17 C C3B HEM . . . B 2 -7.522 60.812 112.232 1 13.46 ? C3B HEM 1 A 1 HETATM 18 C C4B HEM . . . B 2 -6.685 59.879 111.612 1 12.29 ? C4B HEM 1 A 1 HETATM 19 C CMB HEM . . . B 2 -8.919 60.678 114.485 1 13.51 ? CMB HEM 1 A 1 HETATM 20 C CAB HEM . . . B 2 -7.826 62.055 111.651 1 16.27 ? CAB HEM 1 A 1 HETATM 21 C CBB HEM . . . B 2 -8.743 63.064 112.11 1 11.38 ? CBB HEM 1 A 1 HETATM 22 C C1C HEM . . . B 2 -5.081 59.253 109.775 1 13.42 ? C1C HEM 1 A 1 HETATM 23 C C2C HEM . . . B 2 -4.298 59.622 108.683 1 11.47 ? C2C HEM 1 A 1 HETATM 24 C C3C HEM . . . B 2 -3.589 58.446 108.366 1 12.42 ? C3C HEM 1 A 1 HETATM 25 C C4C HEM . . . B 2 -4.047 57.462 109.229 1 14.47 ? C4C HEM 1 A 1 HETATM 26 C CMC HEM . . . B 2 -4.188 61.047 108.081 1 8.64 ? CMC HEM 1 A 1 HETATM 27 C CAC HEM . . . B 2 -2.635 58.152 107.378 1 11.22 ? CAC HEM 1 A 1 HETATM 28 C CBC HEM . . . B 2 -2.272 58.924 106.228 1 16.33 ? CBC HEM 1 A 1 HETATM 29 C C1D HEM . . . B 2 -4 55.082 110.014 1 13.04 ? C1D HEM 1 A 1 HETATM 30 C C2D HEM . . . B 2 -3.674 53.753 109.834 1 11.92 ? C2D HEM 1 A 1 HETATM 31 C C3D HEM . . . B 2 -4.208 53.123 110.964 1 13.18 ? C3D HEM 1 A 1 HETATM 32 C C4D HEM . . . B 2 -4.83 54.109 111.715 1 11.82 ? C4D HEM 1 A 1 HETATM 33 C CMD HEM . . . B 2 -3.02 53.099 108.613 1 10.36 ? CMD HEM 1 A 1 HETATM 34 C CAD HEM . . . B 2 -4.19 51.63 111.27 1 13.85 ? CAD HEM 1 A 1 HETATM 35 C CBD HEM . . . B 2 -3.016 51.229 112.145 1 11.81 ? CBD HEM 1 A 1 HETATM 36 C CGD HEM . . . B 2 -3.008 49.79 112.601 1 12.49 ? CGD HEM 1 A 1 HETATM 37 O O1D HEM . . . B 2 -2.443 49.528 113.657 1 13.81 ? O1D HEM 1 A 1 HETATM 38 O O2D HEM . . . B 2 -3.547 48.922 111.918 1 12.73 ? O2D HEM 1 A 1 HETATM 39 N NA HEM . . . B 2 -6.462 56.1 113.359 1 10.39 ? NA HEM 1 A 1 HETATM 40 N NB HEM . . . B 2 -6.701 58.711 112.255 1 12.91 ? NB HEM 1 A 1 HETATM 41 N NC HEM . . . B 2 -4.921 57.955 110.104 1 12.36 ? NC HEM 1 A 1 HETATM 42 N ND HEM . . . B 2 -4.723 55.274 111.116 1 13.87 ? ND HEM 1 A 1 HETATM 43 FE FE HEM . . . B 2 -5.857 56.937 111.603 1 12.08 ? FE HEM 1 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #