data_1CCI # _model_server_result.job_id 96icl19gz-oR6SR3EHORMg _model_server_result.datetime_utc '2024-11-24 17:02:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":499}' # _entry.id 1CCI # _exptl.entry_id 1CCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 97.138 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-DIMETHYLIMIDAZOLIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CCI _cell.length_a 107.72 _cell.length_b 76.63 _cell.length_c 51.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 D O HOH . A HOH 313 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? # _chem_comp.formula 'C5 H9 N2 1' _chem_comp.formula_weight 97.138 _chem_comp.id DMI _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-DIMETHYLIMIDAZOLIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DMI doub 83 n y N1 C5 DMI sing 84 n y N1 HN1 DMI sing 85 n n C2 CM2 DMI sing 86 n n C2 N3 DMI sing 87 n y CM2 HM21 DMI sing 88 n n CM2 HM22 DMI sing 89 n n CM2 HM23 DMI sing 90 n n N3 CM3 DMI sing 91 n n N3 C4 DMI sing 92 n y CM3 HM31 DMI sing 93 n n CM3 HM32 DMI sing 94 n n CM3 HM33 DMI sing 95 n n C4 C5 DMI doub 96 n y C4 H4 DMI sing 97 n n C5 H5 DMI sing 98 n n # _atom_sites.entry_id 1CCI _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMI A 1 499 499 DMI DMI . C 3 HEM A 1 500 1 HEM HEM . D 4 HOH A 1 300 300 HOH HOH . D 4 HOH A 2 301 301 HOH HOH . D 4 HOH A 3 302 302 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 309 309 HOH HOH . D 4 HOH A 9 310 310 HOH HOH . D 4 HOH A 10 311 311 HOH HOH . D 4 HOH A 11 312 312 HOH HOH . D 4 HOH A 12 313 313 HOH HOH . D 4 HOH A 13 314 314 HOH HOH . D 4 HOH A 14 315 315 HOH HOH . D 4 HOH A 15 316 316 HOH HOH . D 4 HOH A 16 317 317 HOH HOH . D 4 HOH A 17 318 318 HOH HOH . D 4 HOH A 18 319 319 HOH HOH . D 4 HOH A 19 320 320 HOH HOH . D 4 HOH A 20 321 321 HOH HOH . D 4 HOH A 21 322 322 HOH HOH . D 4 HOH A 22 323 323 HOH HOH . D 4 HOH A 23 324 324 HOH HOH . D 4 HOH A 24 325 325 HOH HOH . D 4 HOH A 25 326 326 HOH HOH . D 4 HOH A 26 327 327 HOH HOH . D 4 HOH A 27 328 328 HOH HOH . D 4 HOH A 28 329 329 HOH HOH . D 4 HOH A 29 330 330 HOH HOH . D 4 HOH A 30 331 331 HOH HOH . D 4 HOH A 31 332 332 HOH HOH . D 4 HOH A 32 333 333 HOH HOH . D 4 HOH A 33 334 334 HOH HOH . D 4 HOH A 34 335 335 HOH HOH . D 4 HOH A 35 336 336 HOH HOH . D 4 HOH A 36 337 337 HOH HOH . D 4 HOH A 37 338 338 HOH HOH . D 4 HOH A 38 339 339 HOH HOH . D 4 HOH A 39 340 340 HOH HOH . D 4 HOH A 40 341 341 HOH HOH . D 4 HOH A 41 342 342 HOH HOH . D 4 HOH A 42 344 344 HOH HOH . D 4 HOH A 43 345 345 HOH HOH . D 4 HOH A 44 346 346 HOH HOH . D 4 HOH A 45 347 347 HOH HOH . D 4 HOH A 46 348 348 HOH HOH . D 4 HOH A 47 349 349 HOH HOH . D 4 HOH A 48 350 350 HOH HOH . D 4 HOH A 49 355 355 HOH HOH . D 4 HOH A 50 356 356 HOH HOH . D 4 HOH A 51 357 357 HOH HOH . D 4 HOH A 52 358 358 HOH HOH . D 4 HOH A 53 359 359 HOH HOH . D 4 HOH A 54 406 406 HOH HOH . D 4 HOH A 55 408 408 HOH HOH . D 4 HOH A 56 409 409 HOH HOH . D 4 HOH A 57 410 410 HOH HOH . D 4 HOH A 58 411 411 HOH HOH . D 4 HOH A 59 412 412 HOH HOH . D 4 HOH A 60 413 413 HOH HOH . D 4 HOH A 61 414 414 HOH HOH . D 4 HOH A 62 415 415 HOH HOH . D 4 HOH A 63 416 416 HOH HOH . D 4 HOH A 64 417 417 HOH HOH . D 4 HOH A 65 418 418 HOH HOH . D 4 HOH A 66 419 419 HOH HOH . D 4 HOH A 67 420 420 HOH HOH . D 4 HOH A 68 421 421 HOH HOH . D 4 HOH A 69 422 422 HOH HOH . D 4 HOH A 70 423 423 HOH HOH . D 4 HOH A 71 424 424 HOH HOH . D 4 HOH A 72 425 425 HOH HOH . D 4 HOH A 73 426 426 HOH HOH . D 4 HOH A 74 427 427 HOH HOH . D 4 HOH A 75 428 428 HOH HOH . D 4 HOH A 76 429 429 HOH HOH . D 4 HOH A 77 430 430 HOH HOH . D 4 HOH A 78 431 431 HOH HOH . D 4 HOH A 79 432 432 HOH HOH . D 4 HOH A 80 433 433 HOH HOH . D 4 HOH A 81 434 434 HOH HOH . D 4 HOH A 82 435 435 HOH HOH . D 4 HOH A 83 436 436 HOH HOH . D 4 HOH A 84 437 437 HOH HOH . D 4 HOH A 85 438 438 HOH HOH . D 4 HOH A 86 439 439 HOH HOH . D 4 HOH A 87 440 440 HOH HOH . D 4 HOH A 88 441 441 HOH HOH . D 4 HOH A 89 443 443 HOH HOH . D 4 HOH A 90 444 444 HOH HOH . D 4 HOH A 91 445 445 HOH HOH . D 4 HOH A 92 446 446 HOH HOH . D 4 HOH A 93 447 447 HOH HOH . D 4 HOH A 94 448 448 HOH HOH . D 4 HOH A 95 449 449 HOH HOH . D 4 HOH A 96 450 450 HOH HOH . D 4 HOH A 97 451 451 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DMI . . . B 2 32.651 93.673 48.861 1 35.49 ? N1 DMI 499 A 1 HETATM 2 C C2 DMI . . . B 2 32.702 93.284 47.604 1 36.43 ? C2 DMI 499 A 1 HETATM 3 C CM2 DMI . . . B 2 33.779 92.475 46.998 1 34.36 ? CM2 DMI 499 A 1 HETATM 4 N N3 DMI . . . B 2 31.581 93.728 47.045 1 36.67 ? N3 DMI 499 A 1 HETATM 5 C CM3 DMI . . . B 2 31.167 93.503 45.625 1 34.99 ? CM3 DMI 499 A 1 HETATM 6 C C4 DMI . . . B 2 30.843 94.395 47.888 1 35.9 ? C4 DMI 499 A 1 HETATM 7 C C5 DMI . . . B 2 31.547 94.358 49.077 1 36.88 ? C5 DMI 499 A 1 HETATM 8 H HN1 DMI . . . B 2 33.408 93.605 49.478 1 20 ? HN1 DMI 499 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #