data_1CCR # _model_server_result.job_id kucE0J1wOYvDJ30HV0qRrw _model_server_result.datetime_utc '2024-11-18 11:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ccr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":112}' # _entry.id 1CCR # _exptl.entry_id 1CCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CCR _cell.length_a 43.78 _cell.length_b 43.78 _cell.length_c 110.05 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A SG CYS 23 A CYS 22 1_555 B CAB HEC . A HEC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? covale ? covale3 A SG CYS 26 A CYS 25 1_555 B CAC HEC . A HEC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? covale ? covale4 A C PRO 80 A PRO 79 1_555 A N M3L 81 A M3L 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale5 A C M3L 81 A M3L 80 1_555 A N LYS 82 A LYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale6 A C LEU 94 A LEU 93 1_555 A N M3L 95 A M3L 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale7 A C M3L 95 A M3L 94 1_555 A N LYS 96 A LYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? metalc ? metalc1 A NE2 HIS 27 A HIS 26 1_555 B FE HEC . A HEC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A SD MET 89 A MET 88 1_555 B FE HEC . A HEC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CCR _atom_sites.fract_transf_matrix[1][1] 0.022841 _atom_sites.fract_transf_matrix[1][2] 0.013188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 112 1 HEC HEM . C 3 HOH A 1 113 4 HOH HOH . C 3 HOH A 2 114 5 HOH HOH . C 3 HOH A 3 115 6 HOH HOH . C 3 HOH A 4 116 7 HOH HOH . C 3 HOH A 5 117 8 HOH HOH . C 3 HOH A 6 118 9 HOH HOH . C 3 HOH A 7 119 10 HOH HOH . C 3 HOH A 8 120 11 HOH HOH . C 3 HOH A 9 121 12 HOH HOH . C 3 HOH A 10 122 13 HOH HOH . C 3 HOH A 11 123 14 HOH HOH . C 3 HOH A 12 124 15 HOH HOH . C 3 HOH A 13 125 16 HOH HOH . C 3 HOH A 14 126 17 HOH HOH . C 3 HOH A 15 127 18 HOH HOH . C 3 HOH A 16 128 19 HOH HOH . C 3 HOH A 17 129 20 HOH HOH . C 3 HOH A 18 130 21 HOH HOH . C 3 HOH A 19 131 22 HOH HOH . C 3 HOH A 20 132 23 HOH HOH . C 3 HOH A 21 133 24 HOH HOH . C 3 HOH A 22 134 25 HOH HOH . C 3 HOH A 23 135 26 HOH HOH . C 3 HOH A 24 136 27 HOH HOH . C 3 HOH A 25 137 28 HOH HOH . C 3 HOH A 26 138 29 HOH HOH . C 3 HOH A 27 139 30 HOH HOH . C 3 HOH A 28 140 31 HOH HOH . C 3 HOH A 29 141 32 HOH HOH . C 3 HOH A 30 142 33 HOH HOH . C 3 HOH A 31 143 34 HOH HOH . C 3 HOH A 32 144 35 HOH HOH . C 3 HOH A 33 145 36 HOH HOH . C 3 HOH A 34 146 37 HOH HOH . C 3 HOH A 35 147 38 HOH HOH . C 3 HOH A 36 148 39 HOH HOH . C 3 HOH A 37 149 40 HOH HOH . C 3 HOH A 38 150 41 HOH HOH . C 3 HOH A 39 151 42 HOH HOH . C 3 HOH A 40 152 43 HOH HOH . C 3 HOH A 41 153 44 HOH HOH . C 3 HOH A 42 154 45 HOH HOH . C 3 HOH A 43 155 46 HOH HOH . C 3 HOH A 44 156 47 HOH HOH . C 3 HOH A 45 157 48 HOH HOH . C 3 HOH A 46 158 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 2.886 16.923 24.535 1 6.49 ? FE HEC 112 A 1 HETATM 2 C CHA HEC . . . B 2 0.478 14.744 23.614 1 5.28 ? CHA HEC 112 A 1 HETATM 3 C CHB HEC . . . B 2 0.587 19.307 25.293 1 5.33 ? CHB HEC 112 A 1 HETATM 4 C CHC HEC . . . B 2 5.329 18.833 25.864 1 6.37 ? CHC HEC 112 A 1 HETATM 5 C CHD HEC . . . B 2 5.265 14.858 23.135 1 5.76 ? CHD HEC 112 A 1 HETATM 6 N NA HEC . . . B 2 0.926 16.998 24.44 1 5.61 ? NA HEC 112 A 1 HETATM 7 C C1A HEC . . . B 2 0.059 15.976 24.099 1 5.27 ? C1A HEC 112 A 1 HETATM 8 C C2A HEC . . . B 2 -1.271 16.416 24.372 1 5.54 ? C2A HEC 112 A 1 HETATM 9 C C3A HEC . . . B 2 -1.245 17.692 24.801 1 5.37 ? C3A HEC 112 A 1 HETATM 10 C C4A HEC . . . B 2 0.156 18.06 24.868 1 5.12 ? C4A HEC 112 A 1 HETATM 11 C CMA HEC . . . B 2 -2.364 18.62 25.203 1 5.5 ? CMA HEC 112 A 1 HETATM 12 C CAA HEC . . . B 2 -2.526 15.568 24.053 1 5.49 ? CAA HEC 112 A 1 HETATM 13 C CBA HEC . . . B 2 -3.113 16.028 22.701 1 5.42 ? CBA HEC 112 A 1 HETATM 14 C CGA HEC . . . B 2 -4.26 15.196 22.192 1 5.78 ? CGA HEC 112 A 1 HETATM 15 O O1A HEC . . . B 2 -4.536 15.418 20.996 1 6.24 ? O1A HEC 112 A 1 HETATM 16 O O2A HEC . . . B 2 -4.888 14.425 22.956 1 5.55 ? O2A HEC 112 A 1 HETATM 17 N NB HEC . . . B 2 2.958 18.713 25.413 1 5.6 ? NB HEC 112 A 1 HETATM 18 C C1B HEC . . . B 2 1.909 19.587 25.582 1 5.83 ? C1B HEC 112 A 1 HETATM 19 C C2B HEC . . . B 2 2.381 20.832 26.133 1 5.62 ? C2B HEC 112 A 1 HETATM 20 C C3B HEC . . . B 2 3.676 20.66 26.348 1 5.8 ? C3B HEC 112 A 1 HETATM 21 C C4B HEC . . . B 2 4.097 19.392 25.839 1 5.81 ? C4B HEC 112 A 1 HETATM 22 C CMB HEC . . . B 2 1.487 22.049 26.41 1 5.82 ? CMB HEC 112 A 1 HETATM 23 C CAB HEC . . . B 2 4.626 21.727 27.046 1 6.33 ? CAB HEC 112 A 1 HETATM 24 C CBB HEC . . . B 2 4.245 21.789 28.465 1 6.33 ? CBB HEC 112 A 1 HETATM 25 N NC HEC . . . B 2 4.918 16.854 24.515 1 6.35 ? NC HEC 112 A 1 HETATM 26 C C1C HEC . . . B 2 5.764 17.76 25.119 1 6.1 ? C1C HEC 112 A 1 HETATM 27 C C2C HEC . . . B 2 7.128 17.392 24.855 1 6.56 ? C2C HEC 112 A 1 HETATM 28 C C3C HEC . . . B 2 7.089 16.26 24.127 1 6.02 ? C3C HEC 112 A 1 HETATM 29 C C4C HEC . . . B 2 5.732 15.952 23.855 1 5.82 ? C4C HEC 112 A 1 HETATM 30 C CMC HEC . . . B 2 8.339 18.219 25.341 1 6.84 ? CMC HEC 112 A 1 HETATM 31 C CAC HEC . . . B 2 8.317 15.569 23.403 1 6.59 ? CAC HEC 112 A 1 HETATM 32 C CBC HEC . . . B 2 9.374 15.195 24.228 1 6.8 ? CBC HEC 112 A 1 HETATM 33 N ND HEC . . . B 2 2.885 15.162 23.53 1 5.49 ? ND HEC 112 A 1 HETATM 34 C C1D HEC . . . B 2 3.962 14.423 23.104 1 5.28 ? C1D HEC 112 A 1 HETATM 35 C C2D HEC . . . B 2 3.514 13.127 22.61 1 5.72 ? C2D HEC 112 A 1 HETATM 36 C C3D HEC . . . B 2 2.181 13.112 22.703 1 5.41 ? C3D HEC 112 A 1 HETATM 37 C C4D HEC . . . B 2 1.771 14.358 23.305 1 5.43 ? C4D HEC 112 A 1 HETATM 38 C CMD HEC . . . B 2 4.47 12.045 22.056 1 5.67 ? CMD HEC 112 A 1 HETATM 39 C CAD HEC . . . B 2 1.226 11.923 22.434 1 6.3 ? CAD HEC 112 A 1 HETATM 40 C CBD HEC . . . B 2 1.041 11.117 23.763 1 7.11 ? CBD HEC 112 A 1 HETATM 41 C CGD HEC . . . B 2 0.272 9.835 23.656 1 8.09 ? CGD HEC 112 A 1 HETATM 42 O O1D HEC . . . B 2 -0.207 9.534 22.556 1 8.87 ? O1D HEC 112 A 1 HETATM 43 O O2D HEC . . . B 2 0.176 9.077 24.679 1 7.89 ? O2D HEC 112 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #