data_1CD2 # _model_server_result.job_id eLKmdJxM4mA-7FBWOILGmw _model_server_result.datetime_utc '2024-11-24 11:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 1CD2 # _exptl.entry_id 1CD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.76 _cell.angle_gamma 90 _cell.entry_id 1CD2 _cell.length_a 37.465 _cell.length_b 43.131 _cell.length_c 61.306 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 1CD2 _atom_sites.fract_transf_matrix[1][1] 0.026691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002221 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 207 207 NAP NAP . C 3 FOL A 1 307 307 FOL FA . D 4 HOH A 1 208 208 HOH HOH . D 4 HOH A 2 209 209 HOH HOH . D 4 HOH A 3 210 210 HOH HOH . D 4 HOH A 4 211 211 HOH HOH . D 4 HOH A 5 212 212 HOH HOH . D 4 HOH A 6 213 213 HOH HOH . D 4 HOH A 7 214 214 HOH HOH . D 4 HOH A 8 215 215 HOH HOH . D 4 HOH A 9 216 216 HOH HOH . D 4 HOH A 10 217 217 HOH HOH . D 4 HOH A 11 218 218 HOH HOH . D 4 HOH A 12 219 219 HOH HOH . D 4 HOH A 13 220 220 HOH HOH . D 4 HOH A 14 221 221 HOH HOH . D 4 HOH A 15 222 222 HOH HOH . D 4 HOH A 16 223 223 HOH HOH . D 4 HOH A 17 224 224 HOH HOH . D 4 HOH A 18 225 225 HOH HOH . D 4 HOH A 19 226 226 HOH HOH . D 4 HOH A 20 227 227 HOH HOH . D 4 HOH A 21 228 228 HOH HOH . D 4 HOH A 22 229 229 HOH HOH . D 4 HOH A 23 230 230 HOH HOH . D 4 HOH A 24 231 231 HOH HOH . D 4 HOH A 25 232 232 HOH HOH . D 4 HOH A 26 233 233 HOH HOH . D 4 HOH A 27 234 234 HOH HOH . D 4 HOH A 28 235 235 HOH HOH . D 4 HOH A 29 236 236 HOH HOH . D 4 HOH A 30 237 237 HOH HOH . D 4 HOH A 31 238 238 HOH HOH . D 4 HOH A 32 239 239 HOH HOH . D 4 HOH A 33 240 240 HOH HOH . D 4 HOH A 34 241 241 HOH HOH . D 4 HOH A 35 242 242 HOH HOH . D 4 HOH A 36 243 243 HOH HOH . D 4 HOH A 37 244 244 HOH HOH . D 4 HOH A 38 245 245 HOH HOH . D 4 HOH A 39 246 246 HOH HOH . D 4 HOH A 40 247 247 HOH HOH . D 4 HOH A 41 248 248 HOH HOH . D 4 HOH A 42 249 249 HOH HOH . D 4 HOH A 43 250 250 HOH HOH . D 4 HOH A 44 251 251 HOH HOH . D 4 HOH A 45 252 252 HOH HOH . D 4 HOH A 46 253 253 HOH HOH . D 4 HOH A 47 254 254 HOH HOH . D 4 HOH A 48 255 255 HOH HOH . D 4 HOH A 49 256 256 HOH HOH . D 4 HOH A 50 257 257 HOH HOH . D 4 HOH A 51 258 258 HOH HOH . D 4 HOH A 52 259 259 HOH HOH . D 4 HOH A 53 260 260 HOH HOH . D 4 HOH A 54 261 261 HOH HOH . D 4 HOH A 55 262 262 HOH HOH . D 4 HOH A 56 263 263 HOH HOH . D 4 HOH A 57 264 264 HOH HOH . D 4 HOH A 58 265 265 HOH HOH . D 4 HOH A 59 266 266 HOH HOH . D 4 HOH A 60 267 267 HOH HOH . D 4 HOH A 61 268 268 HOH HOH . D 4 HOH A 62 269 269 HOH HOH . D 4 HOH A 63 270 270 HOH HOH . D 4 HOH A 64 271 271 HOH HOH . D 4 HOH A 65 272 272 HOH HOH . D 4 HOH A 66 273 273 HOH HOH . D 4 HOH A 67 274 274 HOH HOH . D 4 HOH A 68 275 275 HOH HOH . D 4 HOH A 69 276 276 HOH HOH . D 4 HOH A 70 277 277 HOH HOH . D 4 HOH A 71 278 278 HOH HOH . D 4 HOH A 72 279 279 HOH HOH . D 4 HOH A 73 280 280 HOH HOH . D 4 HOH A 74 281 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 15.839 9.213 23.565 1 17.62 ? PA NAP 207 A 1 HETATM 2 O O1A NAP . . . B 2 15.893 9.344 22.056 1 17.65 ? O1A NAP 207 A 1 HETATM 3 O O2A NAP . . . B 2 14.586 8.933 24.223 1 18.61 ? O2A NAP 207 A 1 HETATM 4 O O5B NAP . . . B 2 16.534 10.68 24.03 1 20.22 ? O5B NAP 207 A 1 HETATM 5 C C5B NAP . . . B 2 16.898 10.732 25.473 1 21.19 ? C5B NAP 207 A 1 HETATM 6 C C4B NAP . . . B 2 16.632 12.225 25.783 1 23.23 ? C4B NAP 207 A 1 HETATM 7 O O4B NAP . . . B 2 15.462 12.515 25.484 1 23.79 ? O4B NAP 207 A 1 HETATM 8 C C3B NAP . . . B 2 16.696 12.334 27.408 1 23.92 ? C3B NAP 207 A 1 HETATM 9 O O3B NAP . . . B 2 18.167 12.576 27.529 1 23.62 ? O3B NAP 207 A 1 HETATM 10 C C2B NAP . . . B 2 15.862 13.622 27.502 1 25.4 ? C2B NAP 207 A 1 HETATM 11 O O2B NAP . . . B 2 16.495 14.748 26.978 1 28.3 ? O2B NAP 207 A 1 HETATM 12 C C1B NAP . . . B 2 14.749 13.266 26.488 1 25.74 ? C1B NAP 207 A 1 HETATM 13 N N9A NAP . . . B 2 13.573 12.624 27.034 1 27.42 ? N9A NAP 207 A 1 HETATM 14 C C8A NAP . . . B 2 13.103 11.402 26.678 1 27.6 ? C8A NAP 207 A 1 HETATM 15 N N7A NAP . . . B 2 12.006 11.051 27.303 1 26.88 ? N7A NAP 207 A 1 HETATM 16 C C5A NAP . . . B 2 11.793 12.238 28.113 1 28.2 ? C5A NAP 207 A 1 HETATM 17 C C6A NAP . . . B 2 10.7 12.66 29.139 1 28.47 ? C6A NAP 207 A 1 HETATM 18 N N6A NAP . . . B 2 9.68 11.84 29.43 1 29.72 ? N6A NAP 207 A 1 HETATM 19 N N1A NAP . . . B 2 10.823 13.83 29.702 1 29.52 ? N1A NAP 207 A 1 HETATM 20 C C2A NAP . . . B 2 11.874 14.572 29.332 1 28.51 ? C2A NAP 207 A 1 HETATM 21 N N3A NAP . . . B 2 12.854 14.337 28.503 1 27.85 ? N3A NAP 207 A 1 HETATM 22 C C4A NAP . . . B 2 12.739 13.128 27.916 1 27.72 ? C4A NAP 207 A 1 HETATM 23 O O3 NAP . . . B 2 17.071 8.361 23.943 1 19.47 ? O3 NAP 207 A 1 HETATM 24 P PN NAP . . . B 2 17.556 6.847 23.964 1 20.98 ? PN NAP 207 A 1 HETATM 25 O O1N NAP . . . B 2 16.792 6.126 24.913 1 22.29 ? O1N NAP 207 A 1 HETATM 26 O O2N NAP . . . B 2 18.985 6.848 24.247 1 21.04 ? O2N NAP 207 A 1 HETATM 27 O O5D NAP . . . B 2 17.318 6.342 22.479 1 19.6 ? O5D NAP 207 A 1 HETATM 28 C C5D NAP . . . B 2 17.895 6.753 21.259 1 19.72 ? C5D NAP 207 A 1 HETATM 29 C C4D NAP . . . B 2 18.501 5.404 20.788 1 17.4 ? C4D NAP 207 A 1 HETATM 30 O O4D NAP . . . B 2 17.34 4.553 20.415 1 16.34 ? O4D NAP 207 A 1 HETATM 31 C C3D NAP . . . B 2 19.423 5.528 19.539 1 16.41 ? C3D NAP 207 A 1 HETATM 32 O O3D NAP . . . B 2 20.311 4.385 19.457 1 18.23 ? O3D NAP 207 A 1 HETATM 33 C C2D NAP . . . B 2 18.335 5.475 18.426 1 16.52 ? C2D NAP 207 A 1 HETATM 34 O O2D NAP . . . B 2 18.909 5.079 17.242 1 15.67 ? O2D NAP 207 A 1 HETATM 35 C C1D NAP . . . B 2 17.444 4.338 18.974 1 15.75 ? C1D NAP 207 A 1 HETATM 36 N N1N NAP . . . B 2 16.055 4.242 18.348 1 14.92 ? N1N NAP 207 A 1 HETATM 37 C C2N NAP . . . B 2 15.619 3.124 17.592 1 13.32 ? C2N NAP 207 A 1 HETATM 38 C C3N NAP . . . B 2 14.386 3.162 17.094 1 13.66 ? C3N NAP 207 A 1 HETATM 39 C C7N NAP . . . B 2 13.915 1.984 16.299 1 12.69 ? C7N NAP 207 A 1 HETATM 40 O O7N NAP . . . B 2 12.795 2.052 15.848 1 12.13 ? O7N NAP 207 A 1 HETATM 41 N N7N NAP . . . B 2 14.719 0.94 16.115 1 13.02 ? N7N NAP 207 A 1 HETATM 42 C C4N NAP . . . B 2 13.398 4.352 17.26 1 13.09 ? C4N NAP 207 A 1 HETATM 43 C C5N NAP . . . B 2 14.016 5.45 18.059 1 13.32 ? C5N NAP 207 A 1 HETATM 44 C C6N NAP . . . B 2 15.228 5.37 18.548 1 15.26 ? C6N NAP 207 A 1 HETATM 45 P P2B NAP . . . B 2 17.575 16.005 27.52 1 30.76 ? P2B NAP 207 A 1 HETATM 46 O O1X NAP . . . B 2 16.711 16.427 28.706 1 30.37 ? O1X NAP 207 A 1 HETATM 47 O O2X NAP . . . B 2 17.569 16.926 26.402 1 30.36 ? O2X NAP 207 A 1 HETATM 48 O O3X NAP . . . B 2 18.752 15.209 27.926 1 30.39 ? O3X NAP 207 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #