data_1CDE # _model_server_result.job_id Kdp_DhFPKRY_No1B3X_ukw _model_server_result.datetime_utc '2024-11-15 07:06:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":222}' # _entry.id 1CDE # _exptl.entry_id 1CDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.5 _cell.angle_beta 82.8 _cell.angle_gamma 62.6 _cell.entry_id 1CDE _cell.length_a 76.7 _cell.length_b 72.6 _cell.length_c 57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 137 n n C1 C2 GAR sing 138 n n C1 C5 GAR sing 139 n n C1 H1 GAR sing 140 n n O6 HO6 GAR sing 141 n n C2 O8 GAR sing 142 n n C2 C3 GAR sing 143 n n C2 H2 GAR sing 144 n n O8 HO8 GAR sing 145 n n C3 O4 GAR sing 146 n n C3 N19 GAR sing 147 n n C3 H3 GAR sing 148 n n O4 C5 GAR sing 149 n n C5 C10 GAR sing 150 n n C5 H5 GAR sing 151 n n C10 O12 GAR sing 152 n n C10 H101 GAR sing 153 n n C10 H102 GAR sing 154 n n O12 P15 GAR sing 155 n n N19 C21 GAR sing 156 n n N19 H19 GAR sing 157 n n C21 O22 GAR doub 158 n n C21 C23 GAR sing 159 n n C23 N24 GAR sing 160 n n C23 H231 GAR sing 161 n n C23 H232 GAR sing 162 n n N24 H241 GAR sing 163 n n N24 H242 GAR sing 164 n n P15 O16 GAR doub 165 n n P15 O17 GAR sing 166 n n P15 O18 GAR sing 167 n n # _atom_sites.entry_id 1CDE _atom_sites.fract_transf_matrix[1][1] 0.013038 _atom_sites.fract_transf_matrix[1][2] -0.006758 _atom_sites.fract_transf_matrix[1][3] -0.005593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015515 _atom_sites.fract_transf_matrix[2][3] 0.008525 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GAR A 1 222 222 GAR GAR . F 3 DZF A 1 225 225 DZF DZF . G 2 GAR B 1 222 222 GAR GAR . H 3 DZF B 1 225 225 DZF DZF . I 2 GAR C 1 222 222 GAR GAR . J 3 DZF C 1 225 225 DZF DZF . K 2 GAR D 1 222 222 GAR GAR . L 3 DZF D 1 225 225 DZF DZF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . K 2 37.744 26.038 19.169 1 20.06 ? C1 GAR 222 D 1 HETATM 2 O O6 GAR . . . K 2 37.078 26.901 20.112 1 20.4 ? O6 GAR 222 D 1 HETATM 3 C C2 GAR . . . K 2 37.182 26.019 17.731 1 20.99 ? C2 GAR 222 D 1 HETATM 4 O O8 GAR . . . K 2 35.858 26.507 17.63 1 24.86 ? O8 GAR 222 D 1 HETATM 5 C C3 GAR . . . K 2 38.091 26.948 16.922 1 23.58 ? C3 GAR 222 D 1 HETATM 6 O O4 GAR . . . K 2 39.336 26.728 17.564 1 23.66 ? O4 GAR 222 D 1 HETATM 7 C C5 GAR . . . K 2 39.137 26.565 18.972 1 19.24 ? C5 GAR 222 D 1 HETATM 8 C C10 GAR . . . K 2 40.139 25.556 19.541 1 19.21 ? C10 GAR 222 D 1 HETATM 9 O O12 GAR . . . K 2 39.907 25.35 20.938 1 21.83 ? O12 GAR 222 D 1 HETATM 10 N N19 GAR . . . K 2 38.234 26.608 15.469 1 33.15 ? N19 GAR 222 D 1 HETATM 11 C C21 GAR . . . K 2 38.635 27.444 14.478 1 35.8 ? C21 GAR 222 D 1 HETATM 12 O O22 GAR . . . K 2 38.818 28.641 14.694 1 44.14 ? O22 GAR 222 D 1 HETATM 13 C C23 GAR . . . K 2 38.761 26.899 13.023 1 33.23 ? C23 GAR 222 D 1 HETATM 14 N N24 GAR . . . K 2 37.705 27.193 12 1 36.63 ? N24 GAR 222 D 1 HETATM 15 P P15 GAR . . . K 2 40.799 24.387 21.759 1 19.38 ? P15 GAR 222 D 1 HETATM 16 O O16 GAR . . . K 2 40.124 23.014 21.364 1 27 ? O16 GAR 222 D 1 HETATM 17 O O17 GAR . . . K 2 40.659 24.668 23.315 1 16.67 ? O17 GAR 222 D 1 HETATM 18 O O18 GAR . . . K 2 42.142 24.457 21.383 1 24.29 ? O18 GAR 222 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 18 #