data_1CDE
#
_model_server_result.job_id            QOEs9PeyqbPQkJwL3_qZwQ 
_model_server_result.datetime_utc      '2024-11-15 07:06:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":225}' 
#
_entry.id    1CDE 
#
_exptl.entry_id    1CDE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              440.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-DEAZAFOLIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.5 
_cell.angle_beta          82.8 
_cell.angle_gamma         62.6 
_cell.entry_id            1CDE 
_cell.length_a            76.7 
_cell.length_b            72.6 
_cell.length_c            57 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C20 H20 N6 O6' 
_chem_comp.formula_weight    440.409 
_chem_comp.id                DZF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-DEAZAFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DZF sing 83 n y 
N1 C8A DZF sing 84 n y 
N1 HN1 DZF sing 85 n n 
C2 NA2 DZF sing 86 n n 
C2 N3 DZF doub 87 n y 
NA2 HN21 DZF sing 88 n n 
NA2 HN22 DZF sing 89 n n 
N3 C4 DZF sing 90 n y 
C4 O4 DZF doub 91 n n 
C4 C4A DZF sing 92 n y 
C4A C5 DZF sing 93 n y 
C4A C8A DZF doub 94 n y 
C5 C6 DZF doub 95 n y 
C5 H5 DZF sing 96 n n 
C6 C7 DZF sing 97 n y 
C6 C9 DZF sing 98 n n 
C7 N8 DZF doub 99 n y 
C7 H7 DZF sing 100 n n 
N8 C8A DZF sing 101 n y 
C9 N10 DZF sing 102 n n 
C9 H91 DZF sing 103 n n 
C9 H92 DZF sing 104 n n 
N10 C14 DZF sing 105 n n 
N10 HN0 DZF sing 106 n n 
C11 C12 DZF doub 107 n y 
C11 C16 DZF sing 108 n y 
C11 C DZF sing 109 n n 
C12 C13 DZF sing 110 n y 
C12 H12 DZF sing 111 n n 
C13 C14 DZF doub 112 n y 
C13 H13 DZF sing 113 n n 
C14 C15 DZF sing 114 n y 
C15 C16 DZF doub 115 n y 
C15 H15 DZF sing 116 n n 
C16 H16 DZF sing 117 n n 
C O DZF doub 118 n n 
C N DZF sing 119 n n 
N CA DZF sing 120 n n 
N HN DZF sing 121 n n 
CA CB DZF sing 122 n n 
CA CT DZF sing 123 n n 
CA HA DZF sing 124 n n 
CB CG DZF sing 125 n n 
CB HB1 DZF sing 126 n n 
CB HB2 DZF sing 127 n n 
CG CD DZF sing 128 n n 
CG HG1 DZF sing 129 n n 
CG HG2 DZF sing 130 n n 
CD OE1 DZF doub 131 n n 
CD OE2 DZF sing 132 n n 
OE2 HOE2 DZF sing 133 n n 
CT O1 DZF doub 134 n n 
CT O2 DZF sing 135 n n 
O2 HO2 DZF sing 136 n n 
#
_atom_sites.entry_id                     1CDE 
_atom_sites.fract_transf_matrix[1][1]    0.013038 
_atom_sites.fract_transf_matrix[1][2]    -0.006758 
_atom_sites.fract_transf_matrix[1][3]    -0.005593 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015515 
_atom_sites.fract_transf_matrix[2][3]    0.008525 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020177 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GAR A 1 222 222 GAR GAR . 
F 3 DZF A 1 225 225 DZF DZF . 
G 2 GAR B 1 222 222 GAR GAR . 
H 3 DZF B 1 225 225 DZF DZF . 
I 2 GAR C 1 222 222 GAR GAR . 
J 3 DZF C 1 225 225 DZF DZF . 
K 2 GAR D 1 222 222 GAR GAR . 
L 3 DZF D 1 225 225 DZF DZF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DZF . . . F 3 -7.39 -8.632 1.271 1 13.88 ? N1 DZF 225 A 1 
HETATM 2 C C2 DZF . . . F 3 -7.606 -9.272 0.092 1 19.04 ? C2 DZF 225 A 1 
HETATM 3 N NA2 DZF . . . F 3 -8.814 -9.599 -0.245 1 21.15 ? NA2 DZF 225 A 1 
HETATM 4 N N3 DZF . . . F 3 -6.629 -9.7 -0.655 1 23.37 ? N3 DZF 225 A 1 
HETATM 5 C C4 DZF . . . F 3 -5.386 -9.516 -0.283 1 21.74 ? C4 DZF 225 A 1 
HETATM 6 O O4 DZF . . . F 3 -4.533 -10.013 -1.022 1 24.61 ? O4 DZF 225 A 1 
HETATM 7 C C4A DZF . . . F 3 -5.119 -8.83 0.94 1 17.09 ? C4A DZF 225 A 1 
HETATM 8 C C5 DZF . . . F 3 -3.764 -8.441 1.247 1 18.86 ? C5 DZF 225 A 1 
HETATM 9 C C6 DZF . . . F 3 -3.557 -8.133 2.709 1 21.07 ? C6 DZF 225 A 1 
HETATM 10 C C7 DZF . . . F 3 -4.694 -7.334 3.345 1 17.11 ? C7 DZF 225 A 1 
HETATM 11 N N8 DZF . . . F 3 -6.01 -7.814 2.87 1 14.72 ? N8 DZF 225 A 1 
HETATM 12 C C8A DZF . . . F 3 -6.174 -8.396 1.707 1 14 ? C8A DZF 225 A 1 
HETATM 13 C C9 DZF . . . F 3 -3.295 -9.475 3.365 1 32.58 ? C9 DZF 225 A 1 
HETATM 14 N N10 DZF . . . F 3 -2.862 -9.073 4.692 1 45.11 ? N10 DZF 225 A 1 
HETATM 15 C C11 DZF . . . F 3 -4.46 -10.551 8.15 1 67.83 ? C11 DZF 225 A 1 
HETATM 16 C C12 DZF . . . F 3 -4.772 -11.162 6.934 1 62.15 ? C12 DZF 225 A 1 
HETATM 17 C C13 DZF . . . F 3 -4.177 -10.764 5.757 1 56.37 ? C13 DZF 225 A 1 
HETATM 18 C C14 DZF . . . F 3 -3.249 -9.73 5.789 1 54.21 ? C14 DZF 225 A 1 
HETATM 19 C C15 DZF . . . F 3 -2.93 -9.126 6.999 1 58.87 ? C15 DZF 225 A 1 
HETATM 20 C C16 DZF . . . F 3 -3.533 -9.529 8.172 1 62.28 ? C16 DZF 225 A 1 
HETATM 21 C C DZF . . . F 3 -5.046 -10.989 9.401 1 76.69 ? C DZF 225 A 1 
HETATM 22 O O DZF . . . F 3 -4.94 -10.426 10.492 1 77.3 ? O DZF 225 A 1 
HETATM 23 N N DZF . . . F 3 -5.797 -12.063 9.289 1 86.63 ? N DZF 225 A 1 
HETATM 24 C CA DZF . . . F 3 -6.489 -12.778 10.381 1 97.08 ? CA DZF 225 A 1 
HETATM 25 C CB DZF . . . F 3 -7.693 -11.909 10.965 1 98.11 ? CB DZF 225 A 1 
HETATM 26 C CG DZF . . . F 3 -9.006 -11.628 10.161 1 96.73 ? CG DZF 225 A 1 
HETATM 27 C CD DZF . . . F 3 -8.915 -10.431 9.229 1 93.37 ? CD DZF 225 A 1 
HETATM 28 O OE1 DZF . . . F 3 -9.843 -9.65 9.064 1 92.26 ? OE1 DZF 225 A 1 
HETATM 29 O OE2 DZF . . . F 3 -7.786 -10.319 8.499 1 93.3 ? OE2 DZF 225 A 1 
HETATM 30 C CT DZF . . . F 3 -6.978 -14.115 9.755 1 102.36 ? CT DZF 225 A 1 
HETATM 31 O O1 DZF . . . F 3 -7.856 -14.847 10.215 1 106.52 ? O1 DZF 225 A 1 
HETATM 32 O O2 DZF . . . F 3 -6.273 -14.503 8.644 1 104.64 ? O2 DZF 225 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#