data_1CDM # _model_server_result.job_id nWFqb_KdWIHMAvUecgArhQ _model_server_result.datetime_utc '2025-02-05 10:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 1CDM # _exptl.entry_id 1CDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CDM _cell.length_a 39 _cell.length_b 75.2 _cell.length_c 120.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C CA CA . A CA 1 1_555 A OD2 ASP 17 A ASP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc2 C CA CA . A CA 1 1_555 A OD2 ASP 19 A ASP 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 C CA CA . A CA 1 1_555 A OD1 ASP 21 A ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 C CA CA . A CA 1 1_555 A O THR 23 A THR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc5 C CA CA . A CA 1 1_555 A OE1 GLU 28 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 C CA CA . A CA 1 1_555 A OE2 GLU 28 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc7 C CA CA . A CA 1 1_555 G O HOH . A HOH 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 D CA CA . A CA 2 1_555 A OD1 ASP 53 A ASP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 D CA CA . A CA 2 1_555 A OD1 ASP 55 A ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc10 D CA CA . A CA 2 1_555 A OD1 ASN 57 A ASN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? metalc ? metalc11 D CA CA . A CA 2 1_555 A ND2 ASN 57 A ASN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.389 ? metalc ? metalc12 D CA CA . A CA 2 1_555 A O THR 59 A THR 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc13 D CA CA . A CA 2 1_555 A OE1 GLU 64 A GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc14 D CA CA . A CA 2 1_555 A OE2 GLU 64 A GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc15 D CA CA . A CA 2 1_555 G O HOH . A HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.68 ? metalc ? metalc16 E CA CA . A CA 3 1_555 A OD2 ASP 90 A ASP 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc17 E CA CA . A CA 3 1_555 A OD1 ASP 92 A ASP 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc18 E CA CA . A CA 3 1_555 A OD1 ASN 94 A ASN 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc19 E CA CA . A CA 3 1_555 A O TYR 96 A TYR 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc20 E CA CA . A CA 3 1_555 A OE2 GLU 101 A GLU 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc21 E CA CA . A CA 3 1_555 A OE1 GLU 101 A GLU 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc22 E CA CA . A CA 3 1_555 G O HOH . A HOH 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc23 A OD1 ASP 126 A ASP 129 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc24 A OD2 ASP 128 A ASP 131 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc25 A OD2 ASP 130 A ASP 133 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc26 A O GLN 132 A GLN 135 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc27 A OE2 GLU 137 A GLU 140 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc28 A OE1 GLU 137 A GLU 140 1_555 F CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc29 F CA CA . A CA 148 1_555 G O HOH . A HOH 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CDM _atom_sites.fract_transf_matrix[1][1] 0.025641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1 1 CA CA . D 3 CA A 1 2 2 CA CA . E 3 CA A 1 3 3 CA CA . F 3 CA A 1 148 4 CA CA . G 4 HOH A 1 149 2 HOH HOH . G 4 HOH A 2 150 3 HOH HOH . G 4 HOH A 3 151 4 HOH HOH . G 4 HOH A 4 152 5 HOH HOH . G 4 HOH A 5 153 6 HOH HOH . G 4 HOH A 6 154 7 HOH HOH . G 4 HOH A 7 155 8 HOH HOH . G 4 HOH A 8 156 9 HOH HOH . G 4 HOH A 9 157 10 HOH HOH . G 4 HOH A 10 158 11 HOH HOH . G 4 HOH A 11 159 12 HOH HOH . G 4 HOH A 12 160 13 HOH HOH . G 4 HOH A 13 161 14 HOH HOH . G 4 HOH A 14 162 15 HOH HOH . G 4 HOH A 15 163 16 HOH HOH . G 4 HOH A 16 164 17 HOH HOH . G 4 HOH A 17 165 18 HOH HOH . G 4 HOH A 18 166 19 HOH HOH . G 4 HOH A 19 167 20 HOH HOH . G 4 HOH A 20 168 21 HOH HOH . G 4 HOH A 21 169 22 HOH HOH . G 4 HOH A 22 170 23 HOH HOH . G 4 HOH A 23 171 24 HOH HOH . G 4 HOH A 24 172 25 HOH HOH . G 4 HOH A 25 173 26 HOH HOH . G 4 HOH A 26 174 28 HOH HOH . G 4 HOH A 27 175 29 HOH HOH . G 4 HOH A 28 176 30 HOH HOH . G 4 HOH A 29 177 31 HOH HOH . G 4 HOH A 30 178 33 HOH HOH . G 4 HOH A 31 179 34 HOH HOH . G 4 HOH A 32 180 36 HOH HOH . G 4 HOH A 33 181 37 HOH HOH . G 4 HOH A 34 182 38 HOH HOH . G 4 HOH A 35 183 40 HOH HOH . G 4 HOH A 36 184 41 HOH HOH . G 4 HOH A 37 185 42 HOH HOH . G 4 HOH A 38 186 43 HOH HOH . G 4 HOH A 39 187 44 HOH HOH . G 4 HOH A 40 188 45 HOH HOH . G 4 HOH A 41 189 46 HOH HOH . G 4 HOH A 42 190 47 HOH HOH . G 4 HOH A 43 191 48 HOH HOH . G 4 HOH A 44 192 49 HOH HOH . G 4 HOH A 45 193 50 HOH HOH . G 4 HOH A 46 194 51 HOH HOH . G 4 HOH A 47 195 52 HOH HOH . G 4 HOH A 48 196 53 HOH HOH . H 4 HOH B 1 1 1 HOH HOH . H 4 HOH B 2 27 27 HOH HOH . H 4 HOH B 3 32 32 HOH HOH . H 4 HOH B 4 35 35 HOH HOH . H 4 HOH B 5 39 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.951 _atom_site.Cartn_y 40.696 _atom_site.Cartn_z 85.266 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #