data_1CDP
#
_model_server_result.job_id            5XPOGER58r7RUkdzHQat9g 
_model_server_result.datetime_utc      '2024-11-21 21:51:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":110}' 
#
_entry.id    1CDP 
#
_exptl.entry_id    1CDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.8 
_cell.angle_gamma         90 
_cell.entry_id            1CDP 
_cell.length_a            28.44 
_cell.length_b            60.46 
_cell.length_c            54.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 28.439793 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
metalc ? metalc1 A OD1 ASP 52 A ASP 51 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc2 A OD1 ASP 54 A ASP 53 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 A OG SER 56 A SER 55 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc4 A O PHE 58 A PHE 57 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc5 A OE1 GLU 60 A GLU 59 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 A OE2 GLU 63 A GLU 62 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc7 A OE1 GLU 63 A GLU 62 1_555 C CD CD . A CD 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc8 A OD2 ASP 91 A ASP 90 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc9 A OD1 ASP 93 A ASP 92 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc10 A OD1 ASP 95 A ASP 94 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc11 A O LYS 97 A LYS 96 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc12 A OE2 GLU 102 A GLU 101 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc13 A OE1 GLU 102 A GLU 101 1_555 B CD CD . A CD 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc14 B CD CD . A CD 109 1_555 D O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1CDP 
_atom_sites.fract_transf_matrix[1][1]    0.035162 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002803 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018542 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 109 109 CD CD . 
C 2 CD A 1 110 110 CD CD . 
D 3 HOH A 1 111 111 HOH HOH . 
D 3 HOH A 2 112 112 HOH HOH . 
D 3 HOH A 3 113 113 HOH HOH . 
D 3 HOH A 4 114 114 HOH HOH . 
D 3 HOH A 5 115 115 HOH HOH . 
D 3 HOH A 6 116 116 HOH HOH . 
D 3 HOH A 7 117 117 HOH HOH . 
D 3 HOH A 8 118 118 HOH HOH . 
D 3 HOH A 9 119 119 HOH HOH . 
D 3 HOH A 10 120 120 HOH HOH . 
D 3 HOH A 11 121 121 HOH HOH . 
D 3 HOH A 12 122 122 HOH HOH . 
D 3 HOH A 13 123 123 HOH HOH . 
D 3 HOH A 14 124 124 HOH HOH . 
D 3 HOH A 15 125 125 HOH HOH . 
D 3 HOH A 16 126 126 HOH HOH . 
D 3 HOH A 17 128 128 HOH HOH . 
D 3 HOH A 18 129 129 HOH HOH . 
D 3 HOH A 19 130 130 HOH HOH . 
D 3 HOH A 20 131 131 HOH HOH . 
D 3 HOH A 21 132 132 HOH HOH . 
D 3 HOH A 22 133 133 HOH HOH . 
D 3 HOH A 23 134 134 HOH HOH . 
D 3 HOH A 24 135 135 HOH HOH . 
D 3 HOH A 25 136 136 HOH HOH . 
D 3 HOH A 26 137 137 HOH HOH . 
D 3 HOH A 27 138 138 HOH HOH . 
D 3 HOH A 28 139 139 HOH HOH . 
D 3 HOH A 29 140 140 HOH HOH . 
D 3 HOH A 30 141 141 HOH HOH . 
D 3 HOH A 31 142 142 HOH HOH . 
D 3 HOH A 32 143 143 HOH HOH . 
D 3 HOH A 33 144 144 HOH HOH . 
D 3 HOH A 34 145 145 HOH HOH . 
D 3 HOH A 35 146 146 HOH HOH . 
D 3 HOH A 36 147 147 HOH HOH . 
D 3 HOH A 37 148 148 HOH HOH . 
D 3 HOH A 38 149 149 HOH HOH . 
D 3 HOH A 39 150 150 HOH HOH . 
D 3 HOH A 40 151 151 HOH HOH . 
D 3 HOH A 41 152 152 HOH HOH . 
D 3 HOH A 42 153 153 HOH HOH . 
D 3 HOH A 43 154 154 HOH HOH . 
D 3 HOH A 44 155 155 HOH HOH . 
D 3 HOH A 45 156 156 HOH HOH . 
D 3 HOH A 46 157 157 HOH HOH . 
D 3 HOH A 47 158 158 HOH HOH . 
D 3 HOH A 48 159 159 HOH HOH . 
D 3 HOH A 49 160 160 HOH HOH . 
D 3 HOH A 50 161 161 HOH HOH . 
D 3 HOH A 51 162 162 HOH HOH . 
D 3 HOH A 52 163 163 HOH HOH . 
D 3 HOH A 53 164 164 HOH HOH . 
D 3 HOH A 54 165 165 HOH HOH . 
D 3 HOH A 55 166 166 HOH HOH . 
D 3 HOH A 56 167 167 HOH HOH . 
D 3 HOH A 57 168 168 HOH HOH . 
D 3 HOH A 58 169 169 HOH HOH . 
D 3 HOH A 59 170 170 HOH HOH . 
D 3 HOH A 60 171 171 HOH HOH . 
D 3 HOH A 61 172 172 HOH HOH . 
D 3 HOH A 62 173 173 HOH HOH . 
D 3 HOH A 63 174 174 HOH HOH . 
D 3 HOH A 64 175 175 HOH HOH . 
D 3 HOH A 65 176 176 HOH HOH . 
D 3 HOH A 66 177 177 HOH HOH . 
D 3 HOH A 67 178 178 HOH HOH . 
D 3 HOH A 68 179 179 HOH HOH . 
D 3 HOH A 69 180 180 HOH HOH . 
D 3 HOH A 70 181 181 HOH HOH . 
D 3 HOH A 71 182 182 HOH HOH . 
D 3 HOH A 72 183 183 HOH HOH . 
D 3 HOH A 73 184 184 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.088 
_atom_site.Cartn_y               18.6 
_atom_site.Cartn_z               22.005 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        8.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           110 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#