data_1CDT # _model_server_result.job_id JGJqkXARAoO4OPaqZrgQSg _model_server_result.datetime_utc '2025-03-04 23:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":61}' # _entry.id 1CDT # _exptl.entry_id 1CDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CDT _cell.length_a 73.9 _cell.length_b 73.9 _cell.length_c 59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 21 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 42 A CYS 42 1_555 A SG CYS 53 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 54 A CYS 54 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 3 B CYS 3 1_555 B SG CYS 21 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 B SG CYS 14 B CYS 14 1_555 B SG CYS 38 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 42 B CYS 42 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 54 B CYS 54 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 197 n n P O2 PO4 sing 198 n n P O3 PO4 sing 199 n n P O4 PO4 sing 200 n n # _atom_sites.entry_id 1CDT _atom_sites.fract_transf_matrix[1][1] 0.013532 _atom_sites.fract_transf_matrix[1][2] 0.007813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 61 61 PO4 PO4 . D 2 PO4 B 1 61 61 PO4 PO4 . E 3 HOH A 1 62 1 HOH HOH . E 3 HOH A 2 63 2 HOH HOH . E 3 HOH A 3 64 3 HOH HOH . E 3 HOH A 4 65 4 HOH HOH . E 3 HOH A 5 66 5 HOH HOH . E 3 HOH A 6 67 6 HOH HOH . E 3 HOH A 7 68 7 HOH HOH . E 3 HOH A 8 69 8 HOH HOH . E 3 HOH A 9 70 9 HOH HOH . E 3 HOH A 10 71 10 HOH HOH . E 3 HOH A 11 72 11 HOH HOH . E 3 HOH A 12 73 12 HOH HOH . E 3 HOH A 13 74 13 HOH HOH . E 3 HOH A 14 75 14 HOH HOH . E 3 HOH A 15 76 15 HOH HOH . E 3 HOH A 16 77 16 HOH HOH . E 3 HOH A 17 78 17 HOH HOH . E 3 HOH A 18 79 18 HOH HOH . E 3 HOH A 19 80 19 HOH HOH . E 3 HOH A 20 81 20 HOH HOH . E 3 HOH A 21 82 22 HOH HOH . E 3 HOH A 22 83 23 HOH HOH . E 3 HOH A 23 84 24 HOH HOH . E 3 HOH A 24 85 25 HOH HOH . E 3 HOH A 25 86 38 HOH HOH . E 3 HOH A 26 87 39 HOH HOH . E 3 HOH A 27 88 43 HOH HOH . E 3 HOH A 28 89 44 HOH HOH . F 3 HOH B 1 62 21 HOH HOH . F 3 HOH B 2 63 26 HOH HOH . F 3 HOH B 3 64 27 HOH HOH . F 3 HOH B 4 65 28 HOH HOH . F 3 HOH B 5 66 29 HOH HOH . F 3 HOH B 6 67 30 HOH HOH . F 3 HOH B 7 68 31 HOH HOH . F 3 HOH B 8 69 32 HOH HOH . F 3 HOH B 9 70 33 HOH HOH . F 3 HOH B 10 71 34 HOH HOH . F 3 HOH B 11 72 35 HOH HOH . F 3 HOH B 12 73 36 HOH HOH . F 3 HOH B 13 74 37 HOH HOH . F 3 HOH B 14 75 40 HOH HOH . F 3 HOH B 15 76 41 HOH HOH . F 3 HOH B 16 77 42 HOH HOH . F 3 HOH B 17 78 45 HOH HOH . F 3 HOH B 18 79 46 HOH HOH . F 3 HOH B 19 80 47 HOH HOH . F 3 HOH B 20 81 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 9.115 21.856 4.914 0.5 22.48 ? P PO4 61 A 1 HETATM 2 O O1 PO4 . . . C 2 8.737 22.337 6.294 0.5 22.46 ? O1 PO4 61 A 1 HETATM 3 O O2 PO4 . . . C 2 10.367 21.046 4.987 0.5 22.43 ? O2 PO4 61 A 1 HETATM 4 O O3 PO4 . . . C 2 8.002 21.023 4.348 0.5 22.45 ? O3 PO4 61 A 1 HETATM 5 O O4 PO4 . . . C 2 9.32 23.063 4.042 0.5 22.46 ? O4 PO4 61 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #