data_1CER # _model_server_result.job_id nPg0qp11h0bnLruPEK5X1A _model_server_result.datetime_utc '2025-03-01 08:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":336}' # _entry.id 1CER # _exptl.entry_id 1CER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CER _cell.length_a 144.77 _cell.length_b 148.77 _cell.length_c 149.5 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CER _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1CER _atom_sites.fract_transf_matrix[1][1] 0.006908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD O 1 336 336 NAD NAD . J 2 NAD P 1 336 336 NAD NAD . K 2 NAD Q 1 336 336 NAD NAD . L 2 NAD R 1 336 336 NAD NAD . M 2 NAD A 1 336 336 NAD NAD . N 2 NAD B 1 336 336 NAD NAD . O 2 NAD C 1 336 336 NAD NAD . P 2 NAD D 1 336 336 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 2 27.703 89.726 -4.654 1 23.91 ? PA NAD 336 B 1 HETATM 2 O O1A NAD . . . N 2 29.043 89.755 -5.339 1 24.3 ? O1A NAD 336 B 1 HETATM 3 O O2A NAD . . . N 2 26.999 88.407 -4.429 1 26.87 ? O2A NAD 336 B 1 HETATM 4 O O5B NAD . . . N 2 26.536 90.464 -5.492 1 26.65 ? O5B NAD 336 B 1 HETATM 5 C C5B NAD . . . N 2 26.94 91.002 -6.78 1 26.33 ? C5B NAD 336 B 1 HETATM 6 C C4B NAD . . . N 2 25.805 90.996 -7.719 1 26.44 ? C4B NAD 336 B 1 HETATM 7 O O4B NAD . . . N 2 25.994 92.255 -8.317 1 27.48 ? O4B NAD 336 B 1 HETATM 8 C C3B NAD . . . N 2 26.11 89.946 -8.735 1 25.72 ? C3B NAD 336 B 1 HETATM 9 O O3B NAD . . . N 2 24.897 89.549 -9.294 1 27.54 ? O3B NAD 336 B 1 HETATM 10 C C2B NAD . . . N 2 26.781 90.733 -9.815 1 25.71 ? C2B NAD 336 B 1 HETATM 11 O O2B NAD . . . N 2 26.522 90.115 -11.039 1 24.3 ? O2B NAD 336 B 1 HETATM 12 C C1B NAD . . . N 2 25.966 91.966 -9.709 1 26.97 ? C1B NAD 336 B 1 HETATM 13 N N9A NAD . . . N 2 26.588 93.084 -10.379 1 28.74 ? N9A NAD 336 B 1 HETATM 14 C C8A NAD . . . N 2 27.883 93.429 -10.318 1 29.29 ? C8A NAD 336 B 1 HETATM 15 N N7A NAD . . . N 2 28.126 94.458 -11.147 1 30.22 ? N7A NAD 336 B 1 HETATM 16 C C5A NAD . . . N 2 26.931 94.706 -11.689 1 31 ? C5A NAD 336 B 1 HETATM 17 C C6A NAD . . . N 2 26.647 95.786 -12.519 1 31.66 ? C6A NAD 336 B 1 HETATM 18 N N6A NAD . . . N 2 27.654 96.46 -13.09 1 32.34 ? N6A NAD 336 B 1 HETATM 19 N N1A NAD . . . N 2 25.36 95.999 -12.848 1 31.82 ? N1A NAD 336 B 1 HETATM 20 C C2A NAD . . . N 2 24.409 95.168 -12.416 1 32.19 ? C2A NAD 336 B 1 HETATM 21 N N3A NAD . . . N 2 24.686 94.145 -11.607 1 31.08 ? N3A NAD 336 B 1 HETATM 22 C C4A NAD . . . N 2 25.95 93.889 -11.22 1 30.08 ? C4A NAD 336 B 1 HETATM 23 O O3 NAD . . . N 2 27.773 90.633 -3.357 1 21.49 ? O3 NAD 336 B 1 HETATM 24 P PN NAD . . . N 2 26.808 90.771 -2.16 1 21.39 ? PN NAD 336 B 1 HETATM 25 O O1N NAD . . . N 2 27.557 90.082 -1.084 1 19.26 ? O1N NAD 336 B 1 HETATM 26 O O2N NAD . . . N 2 25.328 90.87 -2.516 1 21.85 ? O2N NAD 336 B 1 HETATM 27 O O5D NAD . . . N 2 27.288 92.223 -1.792 1 22.6 ? O5D NAD 336 B 1 HETATM 28 C C5D NAD . . . N 2 26.805 93.361 -2.503 1 19.95 ? C5D NAD 336 B 1 HETATM 29 C C4D NAD . . . N 2 27.114 94.692 -1.857 1 20.04 ? C4D NAD 336 B 1 HETATM 30 O O4D NAD . . . N 2 26.505 94.658 -0.591 1 20.17 ? O4D NAD 336 B 1 HETATM 31 C C3D NAD . . . N 2 28.515 95.157 -1.631 1 20.2 ? C3D NAD 336 B 1 HETATM 32 O O3D NAD . . . N 2 28.661 96.632 -1.568 1 21.9 ? O3D NAD 336 B 1 HETATM 33 C C2D NAD . . . N 2 28.66 94.557 -0.266 1 20.43 ? C2D NAD 336 B 1 HETATM 34 O O2D NAD . . . N 2 29.778 95.038 0.476 1 24.56 ? O2D NAD 336 B 1 HETATM 35 C C1D NAD . . . N 2 27.416 94.902 0.45 1 19.92 ? C1D NAD 336 B 1 HETATM 36 N N1N NAD . . . N 2 27.008 94.014 1.535 1 19.83 ? N1N NAD 336 B 1 HETATM 37 C C2N NAD . . . N 2 27.223 92.628 1.527 1 20.29 ? C2N NAD 336 B 1 HETATM 38 C C3N NAD . . . N 2 26.973 91.918 2.699 1 20.59 ? C3N NAD 336 B 1 HETATM 39 C C7N NAD . . . N 2 27.214 90.417 2.803 1 19.76 ? C7N NAD 336 B 1 HETATM 40 O O7N NAD . . . N 2 27.706 89.858 3.794 1 20.62 ? O7N NAD 336 B 1 HETATM 41 N N7N NAD . . . N 2 27.178 89.786 1.657 1 21.87 ? N7N NAD 336 B 1 HETATM 42 C C4N NAD . . . N 2 26.51 92.613 3.818 1 21.24 ? C4N NAD 336 B 1 HETATM 43 C C5N NAD . . . N 2 26.178 93.945 3.801 1 19.91 ? C5N NAD 336 B 1 HETATM 44 C C6N NAD . . . N 2 26.46 94.623 2.639 1 20.08 ? C6N NAD 336 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 44 #