data_1CER # _model_server_result.job_id myhH6BemZk_06QpDjjebJA _model_server_result.datetime_utc '2025-03-01 08:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":336}' # _entry.id 1CER # _exptl.entry_id 1CER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CER _cell.length_a 144.77 _cell.length_b 148.77 _cell.length_c 149.5 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CER _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1CER _atom_sites.fract_transf_matrix[1][1] 0.006908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD O 1 336 336 NAD NAD . J 2 NAD P 1 336 336 NAD NAD . K 2 NAD Q 1 336 336 NAD NAD . L 2 NAD R 1 336 336 NAD NAD . M 2 NAD A 1 336 336 NAD NAD . N 2 NAD B 1 336 336 NAD NAD . O 2 NAD C 1 336 336 NAD NAD . P 2 NAD D 1 336 336 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . P 2 25.292 59.34 17.208 1 28.96 ? PA NAD 336 D 1 HETATM 2 O O1A NAD . . . P 2 26.713 59.097 17.657 1 25.64 ? O1A NAD 336 D 1 HETATM 3 O O2A NAD . . . P 2 24.865 60.762 16.882 1 31.15 ? O2A NAD 336 D 1 HETATM 4 O O5B NAD . . . P 2 24.065 58.817 18.18 1 28.87 ? O5B NAD 336 D 1 HETATM 5 C C5B NAD . . . P 2 24.411 58.057 19.338 1 30.23 ? C5B NAD 336 D 1 HETATM 6 C C4B NAD . . . P 2 23.665 58.572 20.551 1 32.16 ? C4B NAD 336 D 1 HETATM 7 O O4B NAD . . . P 2 23.297 57.469 21.392 1 33.69 ? O4B NAD 336 D 1 HETATM 8 C C3B NAD . . . P 2 24.47 59.433 21.503 1 32.38 ? C3B NAD 336 D 1 HETATM 9 O O3B NAD . . . P 2 23.498 60.147 22.241 1 31.71 ? O3B NAD 336 D 1 HETATM 10 C C2B NAD . . . P 2 25.155 58.475 22.463 1 33.37 ? C2B NAD 336 D 1 HETATM 11 O O2B NAD . . . P 2 25.607 59.145 23.671 1 34.8 ? O2B NAD 336 D 1 HETATM 12 C C1B NAD . . . P 2 23.953 57.577 22.655 1 33.13 ? C1B NAD 336 D 1 HETATM 13 N N9A NAD . . . P 2 24.255 56.242 23.105 1 32.48 ? N9A NAD 336 D 1 HETATM 14 C C8A NAD . . . P 2 25.444 55.606 23.03 1 33.2 ? C8A NAD 336 D 1 HETATM 15 N N7A NAD . . . P 2 25.545 54.564 23.896 1 32.8 ? N7A NAD 336 D 1 HETATM 16 C C5A NAD . . . P 2 24.328 54.629 24.457 1 33.01 ? C5A NAD 336 D 1 HETATM 17 C C6A NAD . . . P 2 23.863 53.594 25.23 1 33.57 ? C6A NAD 336 D 1 HETATM 18 N N6A NAD . . . P 2 24.826 52.789 25.636 1 34.85 ? N6A NAD 336 D 1 HETATM 19 N N1A NAD . . . P 2 22.551 53.501 25.516 1 33.66 ? N1A NAD 336 D 1 HETATM 20 C C2A NAD . . . P 2 21.787 54.519 25.074 1 34.56 ? C2A NAD 336 D 1 HETATM 21 N N3A NAD . . . P 2 22.204 55.571 24.328 1 32.98 ? N3A NAD 336 D 1 HETATM 22 C C4A NAD . . . P 2 23.497 55.614 23.982 1 32.6 ? C4A NAD 336 D 1 HETATM 23 O O3 NAD . . . P 2 25.017 58.651 15.814 1 26.72 ? O3 NAD 336 D 1 HETATM 24 P PN NAD . . . P 2 23.872 58.626 14.818 1 25.07 ? PN NAD 336 D 1 HETATM 25 O O1N NAD . . . P 2 24.633 59.112 13.67 1 27.33 ? O1N NAD 336 D 1 HETATM 26 O O2N NAD . . . P 2 22.449 58.934 15.26 1 27.19 ? O2N NAD 336 D 1 HETATM 27 O O5D NAD . . . P 2 24.009 57.1 14.663 1 26.72 ? O5D NAD 336 D 1 HETATM 28 C C5D NAD . . . P 2 22.937 56.239 15.043 1 27.78 ? C5D NAD 336 D 1 HETATM 29 C C4D NAD . . . P 2 22.921 54.92 14.26 1 30.24 ? C4D NAD 336 D 1 HETATM 30 O O4D NAD . . . P 2 22.255 54.939 12.991 1 30.74 ? O4D NAD 336 D 1 HETATM 31 C C3D NAD . . . P 2 24.199 54.181 13.903 1 30.83 ? C3D NAD 336 D 1 HETATM 32 O O3D NAD . . . P 2 23.894 52.782 14.062 1 33.84 ? O3D NAD 336 D 1 HETATM 33 C C2D NAD . . . P 2 24.453 54.478 12.435 1 30.55 ? C2D NAD 336 D 1 HETATM 34 O O2D NAD . . . P 2 25.472 53.696 11.777 1 33.89 ? O2D NAD 336 D 1 HETATM 35 C C1D NAD . . . P 2 23.051 54.381 11.95 1 30.01 ? C1D NAD 336 D 1 HETATM 36 N N1N NAD . . . P 2 22.671 55.41 11.003 1 29.86 ? N1N NAD 336 D 1 HETATM 37 C C2N NAD . . . P 2 23.193 56.73 11.07 1 31.5 ? C2N NAD 336 D 1 HETATM 38 C C3N NAD . . . P 2 22.798 57.764 10.212 1 31.52 ? C3N NAD 336 D 1 HETATM 39 C C7N NAD . . . P 2 23.627 59.024 9.976 1 32 ? C7N NAD 336 D 1 HETATM 40 O O7N NAD . . . P 2 23.86 59.374 8.816 1 32.9 ? O7N NAD 336 D 1 HETATM 41 N N7N NAD . . . P 2 24.292 59.553 11.006 1 33.04 ? N7N NAD 336 D 1 HETATM 42 C C4N NAD . . . P 2 21.852 57.407 9.27 1 31.95 ? C4N NAD 336 D 1 HETATM 43 C C5N NAD . . . P 2 21.329 56.086 9.202 1 32.19 ? C5N NAD 336 D 1 HETATM 44 C C6N NAD . . . P 2 21.701 55.079 10.079 1 30.08 ? C6N NAD 336 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #