data_1CF4
#
_model_server_result.job_id            Wf4W1o9ybGtrzPnJY_eYlA 
_model_server_result.datetime_utc      '2025-03-05 22:06:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":185}' 
#
_entry.id    1CF4 
#
_exptl.entry_id    1CF4 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1CF4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc3 D O2G GNP . A GNP 185 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 D N3B GNP . A GNP 185 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc5 D O1B GNP . A GNP 185 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc6 D O2B GNP . A GNP 185 1_555 C MG MG . A MG 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc7 C MG MG . A MG 186 1_555 E O HOH . A HOH 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc8 C MG MG . A MG 186 1_555 E O HOH . A HOH 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     1CF4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 186 186 MG MG . 
D 4 GNP A 1 185 185 GNP GNP . 
E 5 HOH A 1 187 187 HOH HOH . 
E 5 HOH A 2 188 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . D 4 -2.635 -10.761 3.318 1 0 ? PG GNP 185 A 1 
HETATM 2 O O1G GNP . . . D 4 -1.797 -11.938 3.637 1 0 ? O1G GNP 185 A 1 
HETATM 3 O O2G GNP . . . D 4 -3.18 -10.648 1.95 1 0 ? O2G GNP 185 A 1 
HETATM 4 O O3G GNP . . . D 4 -3.903 -10.837 4.306 1 0 ? O3G GNP 185 A 1 
HETATM 5 N N3B GNP . . . D 4 -1.699 -9.401 3.571 1 0 ? N3B GNP 185 A 1 
HETATM 6 P PB GNP . . . D 4 -1.404 -8.268 2.375 1 0 ? PB GNP 185 A 1 
HETATM 7 O O1B GNP . . . D 4 -1.339 -8.993 1.087 1 0 ? O1B GNP 185 A 1 
HETATM 8 O O2B GNP . . . D 4 -2.431 -7.214 2.517 1 0 ? O2B GNP 185 A 1 
HETATM 9 O O3A GNP . . . D 4 0.02 -7.538 2.557 1 0 ? O3A GNP 185 A 1 
HETATM 10 P PA GNP . . . D 4 1.353 -7.63 1.656 1 0 ? PA GNP 185 A 1 
HETATM 11 O O1A GNP . . . D 4 1.572 -9.045 1.287 1 0 ? O1A GNP 185 A 1 
HETATM 12 O O2A GNP . . . D 4 1.271 -6.6 0.597 1 0 ? O2A GNP 185 A 1 
HETATM 13 O O5' GNP . . . D 4 2.505 -7.197 2.693 1 0 ? O5' GNP 185 A 1 
HETATM 14 C C5' GNP . . . D 4 2.874 -5.823 2.83 1 0 ? C5' GNP 185 A 1 
HETATM 15 C C4' GNP . . . D 4 4.325 -5.671 3.27 1 0 ? C4' GNP 185 A 1 
HETATM 16 O O4' GNP . . . D 4 5.082 -4.954 2.284 1 0 ? O4' GNP 185 A 1 
HETATM 17 C C3' GNP . . . D 4 4.419 -4.897 4.57 1 0 ? C3' GNP 185 A 1 
HETATM 18 O O3' GNP . . . D 4 4.698 -5.761 5.675 1 0 ? O3' GNP 185 A 1 
HETATM 19 C C2' GNP . . . D 4 5.504 -3.882 4.385 1 0 ? C2' GNP 185 A 1 
HETATM 20 O O2' GNP . . . D 4 6.639 -4.192 5.2 1 0 ? O2' GNP 185 A 1 
HETATM 21 C C1' GNP . . . D 4 5.864 -3.923 2.918 1 0 ? C1' GNP 185 A 1 
HETATM 22 N N9 GNP . . . D 4 5.621 -2.617 2.279 1 0 ? N9 GNP 185 A 1 
HETATM 23 C C8 GNP . . . D 4 4.702 -2.287 1.346 1 0 ? C8 GNP 185 A 1 
HETATM 24 N N7 GNP . . . D 4 4.657 -1.061 0.945 1 0 ? N7 GNP 185 A 1 
HETATM 25 C C5 GNP . . . D 4 5.679 -0.479 1.699 1 0 ? C5 GNP 185 A 1 
HETATM 26 C C6 GNP . . . D 4 6.15 0.875 1.726 1 0 ? C6 GNP 185 A 1 
HETATM 27 O O6 GNP . . . D 4 5.739 1.834 1.073 1 0 ? O6 GNP 185 A 1 
HETATM 28 N N1 GNP . . . D 4 7.207 1.048 2.632 1 0 ? N1 GNP 185 A 1 
HETATM 29 C C2 GNP . . . D 4 7.755 0.04 3.421 1 0 ? C2 GNP 185 A 1 
HETATM 30 N N2 GNP . . . D 4 8.773 0.388 4.212 1 0 ? N2 GNP 185 A 1 
HETATM 31 N N3 GNP . . . D 4 7.314 -1.238 3.4 1 0 ? N3 GNP 185 A 1 
HETATM 32 C C4 GNP . . . D 4 6.281 -1.429 2.524 1 0 ? C4 GNP 185 A 1 
HETATM 33 H HNB3 GNP . . . D 4 -1.307 -9.26 4.458 1 0 ? HNB3 GNP 185 A 1 
HETATM 34 H "H5'2" GNP . . . D 4 2.226 -5.35 3.568 1 0 ? "H5'2" GNP 185 A 1 
HETATM 35 H "H5'1" GNP . . . D 4 2.744 -5.326 1.87 1 0 ? "H5'1" GNP 185 A 1 
HETATM 36 H H4' GNP . . . D 4 4.764 -6.658 3.406 1 0 ? H4' GNP 185 A 1 
HETATM 37 H H3' GNP . . . D 4 3.493 -4.374 4.732 1 0 ? H3' GNP 185 A 1 
HETATM 38 H HO3' GNP . . . D 4 3.954 -6.362 5.763 1 0 ? HO3' GNP 185 A 1 
HETATM 39 H H2' GNP . . . D 4 5.123 -2.891 4.639 1 0 ? H2' GNP 185 A 1 
HETATM 40 H HO2' GNP . . . D 4 7.41 -4.188 4.629 1 0 ? HO2' GNP 185 A 1 
HETATM 41 H H1' GNP . . . D 4 6.898 -4.175 2.829 1 0 ? H1' GNP 185 A 1 
HETATM 42 H H8 GNP . . . D 4 4.028 -3.037 0.943 1 0 ? H8 GNP 185 A 1 
HETATM 43 H HN1 GNP . . . D 4 7.571 1.959 2.7 1 0 ? HN1 GNP 185 A 1 
HETATM 44 H HN21 GNP . . . D 4 9.098 1.344 4.224 1 0 ? HN21 GNP 185 A 1 
HETATM 45 H HN22 GNP . . . D 4 9.219 -0.304 4.798 1 0 ? HN22 GNP 185 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           6329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#