data_1CF8 # _model_server_result.job_id 5IcHSsTuagUdJ_so6vh_xw _model_server_result.datetime_utc '2025-01-09 14:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 1CF8 # _exptl.entry_id 1CF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.535 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.2 _cell.angle_gamma 90 _cell.entry_id 1CF8 _cell.length_a 101.3 _cell.length_b 70.3 _cell.length_c 69.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -28.530643 0 63.48356 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 215 L CYS 214 1_555 B SG CYS 131 H CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 143 H CYS 140 1_555 B SG CYS 198 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE2 GLU 82 L GLU 81 4_556 D CD CD . H CD 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A OE1 GLU 188 L GLU 187 1_555 C CD CD . L CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A OE2 GLU 214 L GLU 213 1_555 C CD CD . L CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 A OE1 GLU 214 L GLU 213 1_555 C CD CD . L CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc5 B OD2 ASP 176 H ASP 173 1_555 D CD CD . H CD 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 B OD1 ASP 176 H ASP 173 1_555 D CD CD . H CD 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? # _chem_comp.formula 'C24 H33 N3 O6' _chem_comp.formula_weight 459.535 _chem_comp.id HAZ _chem_comp.mon_nstd_flag . _chem_comp.name '4-{4-[2-(1A,7A-DIMETHYL-4-OXY-OCTAHYDRO-1-OXA-4-AZA-CYCLOPROPA[A]NAPHTHALEN-4-YL) -ACETYLAMINO]-PHENYLCARBAMOYL}-BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C25 HAZ doub 129 n n C25 O5 HAZ sing 130 n n C25 C24 HAZ sing 131 n n O5 HO5 HAZ sing 132 n n C22 C23 HAZ sing 133 n n C22 C21 HAZ sing 134 n n C22 H221 HAZ sing 135 n n C22 H222 HAZ sing 136 n n C23 C24 HAZ sing 137 n n C23 H231 HAZ sing 138 n n C23 H232 HAZ sing 139 n n C24 H241 HAZ sing 140 n n C24 H242 HAZ sing 141 n n C21 O4 HAZ doub 142 n n C21 N3 HAZ sing 143 n n N3 C18 HAZ sing 144 n n N3 HN3 HAZ sing 145 n n C15 C16 HAZ doub 146 n y C15 C20 HAZ sing 147 n y C15 N2 HAZ sing 148 n n C16 C17 HAZ sing 149 n y C16 H16 HAZ sing 150 n n C17 C18 HAZ doub 151 n y C17 H17 HAZ sing 152 n n C18 C19 HAZ sing 153 n y C19 C20 HAZ doub 154 n y C19 H19 HAZ sing 155 n n C20 H20 HAZ sing 156 n n N2 C14 HAZ sing 157 n n N2 HN2 HAZ sing 158 n n C14 O3 HAZ doub 159 n n C14 C13 HAZ sing 160 n n C1 C10 HAZ sing 161 n n C1 C2 HAZ sing 162 n n C1 H11 HAZ sing 163 n n C1 H12 HAZ sing 164 n n C10 C12 HAZ sing 165 n n C10 C5 HAZ sing 166 n n C10 C9 HAZ sing 167 n n C11 C8 HAZ sing 168 n n C11 H111 HAZ sing 169 n n C11 H112 HAZ sing 170 n n C11 H113 HAZ sing 171 n n C12 H121 HAZ sing 172 n n C12 H122 HAZ sing 173 n n C12 H123 HAZ sing 174 n n C2 C3 HAZ sing 175 n n C2 H21 HAZ sing 176 n n C2 H22 HAZ sing 177 n n C3 N1 HAZ sing 178 n n C3 H31 HAZ sing 179 n n C3 H32 HAZ sing 180 n n O2 N1 HAZ sing 181 n n C13 N1 HAZ sing 182 n n C13 H131 HAZ sing 183 n n C13 H132 HAZ sing 184 n n N1 C5 HAZ sing 185 n n C5 C6 HAZ sing 186 n n C5 H5 HAZ sing 187 n n C6 C7 HAZ sing 188 n n C6 H61 HAZ sing 189 n n C6 H62 HAZ sing 190 n n C7 C8 HAZ sing 191 n n C7 H71 HAZ sing 192 n n C7 H72 HAZ sing 193 n n C8 C9 HAZ sing 194 n n C8 O1 HAZ sing 195 n n C9 O1 HAZ sing 196 n n C9 H9 HAZ sing 197 n n # _atom_sites.entry_id 1CF8 _atom_sites.fract_transf_matrix[1][1] 0.009872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CD L 1 1001 1001 CD CD . D 3 CD H 1 1000 1000 CD CD . E 4 HAZ H 1 800 800 HAZ HAZ . F 5 HOH L 1 1104 1104 HOH HOH . F 5 HOH L 2 1105 1105 HOH HOH . F 5 HOH L 3 1108 1108 HOH HOH . F 5 HOH L 4 1110 1110 HOH HOH . G 5 HOH H 1 1101 1101 HOH HOH . G 5 HOH H 2 1102 1102 HOH HOH . G 5 HOH H 3 1103 1103 HOH HOH . G 5 HOH H 4 1106 1106 HOH HOH . G 5 HOH H 5 1107 1107 HOH HOH . G 5 HOH H 6 1109 1109 HOH HOH . G 5 HOH H 7 1111 1111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 HAZ . . . E 4 -12.767 -11.639 57.671 1 65.95 ? O6 HAZ 800 H 1 HETATM 2 C C25 HAZ . . . E 4 -11.493 -11.332 57.59 1 60.68 ? C25 HAZ 800 H 1 HETATM 3 O O5 HAZ . . . E 4 -10.55 -12.132 57.63 1 61.88 ? O5 HAZ 800 H 1 HETATM 4 C C22 HAZ . . . E 4 -9.892 -8.008 56.272 1 36.51 ? C22 HAZ 800 H 1 HETATM 5 C C23 HAZ . . . E 4 -10.139 -9.515 56.433 1 46.46 ? C23 HAZ 800 H 1 HETATM 6 C C24 HAZ . . . E 4 -11.255 -9.827 57.429 1 54.63 ? C24 HAZ 800 H 1 HETATM 7 C C21 HAZ . . . E 4 -8.781 -7.711 55.264 1 26.72 ? C21 HAZ 800 H 1 HETATM 8 O O4 HAZ . . . E 4 -8.642 -8.404 54.262 1 22.94 ? O4 HAZ 800 H 1 HETATM 9 N N3 HAZ . . . E 4 -7.981 -6.668 55.534 1 23.21 ? N3 HAZ 800 H 1 HETATM 10 C C15 HAZ . . . E 4 -4.797 -5.097 53.49 1 23.8 ? C15 HAZ 800 H 1 HETATM 11 C C16 HAZ . . . E 4 -5.243 -6.407 53.195 1 25.59 ? C16 HAZ 800 H 1 HETATM 12 C C17 HAZ . . . E 4 -6.329 -6.945 53.894 1 23.03 ? C17 HAZ 800 H 1 HETATM 13 C C18 HAZ . . . E 4 -6.984 -6.178 54.896 1 21.16 ? C18 HAZ 800 H 1 HETATM 14 C C19 HAZ . . . E 4 -6.545 -4.875 55.193 1 23.14 ? C19 HAZ 800 H 1 HETATM 15 C C20 HAZ . . . E 4 -5.459 -4.334 54.495 1 25.93 ? C20 HAZ 800 H 1 HETATM 16 N N2 HAZ . . . E 4 -3.8 -4.598 52.836 1 19.71 ? N2 HAZ 800 H 1 HETATM 17 C C14 HAZ . . . E 4 -3.251 -3.372 52.841 1 19.45 ? C14 HAZ 800 H 1 HETATM 18 O O3 HAZ . . . E 4 -3.676 -2.457 53.553 1 19.26 ? O3 HAZ 800 H 1 HETATM 19 C C1 HAZ . . . E 4 -0.13 -0.197 50.137 1 10.71 ? C1 HAZ 800 H 1 HETATM 20 C C10 HAZ . . . E 4 -0.026 -1.66 49.628 1 12.99 ? C10 HAZ 800 H 1 HETATM 21 C C11 HAZ . . . E 4 1.213 -2.771 46.031 1 16.63 ? C11 HAZ 800 H 1 HETATM 22 C C12 HAZ . . . E 4 0.926 -2.552 50.441 1 12.71 ? C12 HAZ 800 H 1 HETATM 23 C C2 HAZ . . . E 4 -0.985 -0.028 51.411 1 11.45 ? C2 HAZ 800 H 1 HETATM 24 C C3 HAZ . . . E 4 -2.373 -0.68 51.256 1 9.5 ? C3 HAZ 800 H 1 HETATM 25 O O2 HAZ . . . E 4 -3.598 -2.36 50.333 1 14.83 ? O2 HAZ 800 H 1 HETATM 26 C C13 HAZ . . . E 4 -2.08 -3.144 51.879 1 13.85 ? C13 HAZ 800 H 1 HETATM 27 N N1 HAZ . . . E 4 -2.341 -2.116 50.78 1 13.64 ? N1 HAZ 800 H 1 HETATM 28 C C5 HAZ . . . E 4 -1.459 -2.222 49.547 1 14.2 ? C5 HAZ 800 H 1 HETATM 29 C C6 HAZ . . . E 4 -1.371 -3.654 49.015 1 14.02 ? C6 HAZ 800 H 1 HETATM 30 C C7 HAZ . . . E 4 -0.883 -3.648 47.552 1 12.67 ? C7 HAZ 800 H 1 HETATM 31 C C8 HAZ . . . E 4 0.276 -2.654 47.224 1 13.82 ? C8 HAZ 800 H 1 HETATM 32 C C9 HAZ . . . E 4 0.612 -1.655 48.178 1 15.15 ? C9 HAZ 800 H 1 HETATM 33 O O1 HAZ . . . E 4 0.004 -0.969 47.308 1 16.19 ? O1 HAZ 800 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 33 #