data_1CFB # _model_server_result.job_id OdfUNQRac0k0k7AlwVng-Q _model_server_result.datetime_utc '2025-02-28 15:16:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5}' # _entry.id 1CFB # _exptl.entry_id 1CFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CFB _cell.length_a 241.8 _cell.length_b 241.8 _cell.length_c 241.8 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 241.8 0 241.8 3 'crystal symmetry operation' 21_556 z,y,-x+1 0 0 1 0 1 0 -1 0 0 0 0 241.8 4 'crystal symmetry operation' 23_655 -z+1,y,x 0 0 -1 0 1 0 1 0 0 241.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 1 NAG 2 n B NAG 2 B 2 NAG ? 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 625 1_555 A SG CYS 97 A CYS 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 C C1 NAG . A NAG 3 1_555 A ND2 ASN 74 A ASN 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 43 A ASN 652 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 E NA NA . A NA 5 1_555 F O HOH . A HOH 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 E NA NA . A NA 5 1_555 A OG SER 70 A SER 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 E NA NA . A NA 5 1_555 A O PRO 71 A PRO 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 E NA NA . A NA 5 1_555 A O ILE 131 A ILE 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 E NA NA . A NA 5 1_555 A OD1 ASN 134 A ASN 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CFB _atom_sites.fract_transf_matrix[1][1] 0.004136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 3 3 NAG NAG . D 4 SO4 A 1 4 4 SO4 SO4 . E 5 NA A 1 5 5 NA NA . F 6 HOH A 1 6 6 HOH HOH . F 6 HOH A 2 7 7 HOH HOH . F 6 HOH A 3 8 8 HOH HOH . F 6 HOH A 4 9 9 HOH HOH . F 6 HOH A 5 10 10 HOH HOH . F 6 HOH A 6 11 11 HOH HOH . F 6 HOH A 7 12 12 HOH HOH . F 6 HOH A 8 13 13 HOH HOH . F 6 HOH A 9 14 14 HOH HOH . F 6 HOH A 10 15 15 HOH HOH . F 6 HOH A 11 16 16 HOH HOH . F 6 HOH A 12 17 17 HOH HOH . F 6 HOH A 13 18 18 HOH HOH . F 6 HOH A 14 19 19 HOH HOH . F 6 HOH A 15 20 20 HOH HOH . F 6 HOH A 16 21 21 HOH HOH . F 6 HOH A 17 22 22 HOH HOH . F 6 HOH A 18 23 23 HOH HOH . F 6 HOH A 19 24 24 HOH HOH . F 6 HOH A 20 25 25 HOH HOH . F 6 HOH A 21 26 26 HOH HOH . F 6 HOH A 22 27 27 HOH HOH . F 6 HOH A 23 28 28 HOH HOH . F 6 HOH A 24 29 29 HOH HOH . F 6 HOH A 25 30 30 HOH HOH . F 6 HOH A 26 31 31 HOH HOH . F 6 HOH A 27 32 32 HOH HOH . F 6 HOH A 28 33 33 HOH HOH . F 6 HOH A 29 34 34 HOH HOH . F 6 HOH A 30 35 35 HOH HOH . F 6 HOH A 31 36 36 HOH HOH . F 6 HOH A 32 37 37 HOH HOH . F 6 HOH A 33 38 38 HOH HOH . F 6 HOH A 34 39 39 HOH HOH . F 6 HOH A 35 40 40 HOH HOH . F 6 HOH A 36 41 41 HOH HOH . F 6 HOH A 37 42 42 HOH HOH . F 6 HOH A 38 43 43 HOH HOH . F 6 HOH A 39 44 44 HOH HOH . F 6 HOH A 40 45 45 HOH HOH . F 6 HOH A 41 46 46 HOH HOH . F 6 HOH A 42 47 47 HOH HOH . F 6 HOH A 43 48 48 HOH HOH . F 6 HOH A 44 49 49 HOH HOH . F 6 HOH A 45 50 50 HOH HOH . F 6 HOH A 46 51 51 HOH HOH . F 6 HOH A 47 52 52 HOH HOH . F 6 HOH A 48 53 53 HOH HOH . F 6 HOH A 49 54 54 HOH HOH . F 6 HOH A 50 55 55 HOH HOH . F 6 HOH A 51 56 56 HOH HOH . F 6 HOH A 52 57 57 HOH HOH . F 6 HOH A 53 58 58 HOH HOH . F 6 HOH A 54 59 59 HOH HOH . F 6 HOH A 55 60 60 HOH HOH . F 6 HOH A 56 61 61 HOH HOH . F 6 HOH A 57 62 62 HOH HOH . F 6 HOH A 58 63 63 HOH HOH . F 6 HOH A 59 64 64 HOH HOH . F 6 HOH A 60 65 65 HOH HOH . F 6 HOH A 61 66 66 HOH HOH . F 6 HOH A 62 67 67 HOH HOH . F 6 HOH A 63 68 68 HOH HOH . F 6 HOH A 64 69 69 HOH HOH . F 6 HOH A 65 70 70 HOH HOH . F 6 HOH A 66 71 71 HOH HOH . F 6 HOH A 67 72 72 HOH HOH . F 6 HOH A 68 73 73 HOH HOH . F 6 HOH A 69 74 74 HOH HOH . F 6 HOH A 70 75 75 HOH HOH . F 6 HOH A 71 76 76 HOH HOH . F 6 HOH A 72 77 77 HOH HOH . F 6 HOH A 73 78 78 HOH HOH . F 6 HOH A 74 79 79 HOH HOH . F 6 HOH A 75 80 80 HOH HOH . F 6 HOH A 76 81 81 HOH HOH . F 6 HOH A 77 82 82 HOH HOH . F 6 HOH A 78 83 83 HOH HOH . F 6 HOH A 79 84 84 HOH HOH . F 6 HOH A 80 85 85 HOH HOH . F 6 HOH A 81 86 86 HOH HOH . F 6 HOH A 82 87 87 HOH HOH . F 6 HOH A 83 88 88 HOH HOH . F 6 HOH A 84 89 89 HOH HOH . F 6 HOH A 85 90 90 HOH HOH . F 6 HOH A 86 91 91 HOH HOH . F 6 HOH A 87 92 92 HOH HOH . F 6 HOH A 88 93 93 HOH HOH . F 6 HOH A 89 94 94 HOH HOH . F 6 HOH A 90 95 95 HOH HOH . F 6 HOH A 91 96 96 HOH HOH . F 6 HOH A 92 97 97 HOH HOH . F 6 HOH A 93 98 98 HOH HOH . F 6 HOH A 94 99 99 HOH HOH . F 6 HOH A 95 100 100 HOH HOH . F 6 HOH A 96 101 101 HOH HOH . F 6 HOH A 97 102 102 HOH HOH . F 6 HOH A 98 103 103 HOH HOH . F 6 HOH A 99 104 104 HOH HOH . F 6 HOH A 100 105 105 HOH HOH . F 6 HOH A 101 106 106 HOH HOH . F 6 HOH A 102 107 107 HOH HOH . F 6 HOH A 103 108 108 HOH HOH . F 6 HOH A 104 109 109 HOH HOH . F 6 HOH A 105 110 110 HOH HOH . F 6 HOH A 106 111 111 HOH HOH . F 6 HOH A 107 112 112 HOH HOH . F 6 HOH A 108 113 113 HOH HOH . F 6 HOH A 109 114 114 HOH HOH . F 6 HOH A 110 115 115 HOH HOH . F 6 HOH A 111 116 116 HOH HOH . F 6 HOH A 112 117 117 HOH HOH . F 6 HOH A 113 118 118 HOH HOH . F 6 HOH A 114 119 119 HOH HOH . F 6 HOH A 115 120 120 HOH HOH . F 6 HOH A 116 121 121 HOH HOH . F 6 HOH A 117 122 122 HOH HOH . F 6 HOH A 118 123 123 HOH HOH . F 6 HOH A 119 124 124 HOH HOH . F 6 HOH A 120 125 125 HOH HOH . F 6 HOH A 121 126 126 HOH HOH . F 6 HOH A 122 127 127 HOH HOH . F 6 HOH A 123 128 128 HOH HOH . F 6 HOH A 124 129 129 HOH HOH . F 6 HOH A 125 130 130 HOH HOH . F 6 HOH A 126 131 131 HOH HOH . F 6 HOH A 127 132 132 HOH HOH . F 6 HOH A 128 133 133 HOH HOH . F 6 HOH A 129 134 134 HOH HOH . F 6 HOH A 130 135 135 HOH HOH . F 6 HOH A 131 136 136 HOH HOH . F 6 HOH A 132 137 137 HOH HOH . F 6 HOH A 133 138 138 HOH HOH . F 6 HOH A 134 139 139 HOH HOH . F 6 HOH A 135 140 140 HOH HOH . F 6 HOH A 136 141 141 HOH HOH . F 6 HOH A 137 142 142 HOH HOH . F 6 HOH A 138 143 143 HOH HOH . F 6 HOH A 139 144 144 HOH HOH . F 6 HOH A 140 145 145 HOH HOH . F 6 HOH A 141 146 146 HOH HOH . F 6 HOH A 142 147 147 HOH HOH . F 6 HOH A 143 148 148 HOH HOH . F 6 HOH A 144 149 149 HOH HOH . F 6 HOH A 145 150 150 HOH HOH . F 6 HOH A 146 151 151 HOH HOH . F 6 HOH A 147 152 152 HOH HOH . F 6 HOH A 148 153 153 HOH HOH . F 6 HOH A 149 154 154 HOH HOH . F 6 HOH A 150 155 155 HOH HOH . F 6 HOH A 151 156 156 HOH HOH . F 6 HOH A 152 157 157 HOH HOH . F 6 HOH A 153 158 158 HOH HOH . F 6 HOH A 154 159 159 HOH HOH . F 6 HOH A 155 160 160 HOH HOH . F 6 HOH A 156 161 161 HOH HOH . F 6 HOH A 157 162 162 HOH HOH . F 6 HOH A 158 163 163 HOH HOH . F 6 HOH A 159 164 164 HOH HOH . F 6 HOH A 160 165 165 HOH HOH . F 6 HOH A 161 166 166 HOH HOH . F 6 HOH A 162 167 167 HOH HOH . F 6 HOH A 163 168 168 HOH HOH . F 6 HOH A 164 169 169 HOH HOH . F 6 HOH A 165 170 170 HOH HOH . F 6 HOH A 166 171 171 HOH HOH . F 6 HOH A 167 172 172 HOH HOH . F 6 HOH A 168 173 173 HOH HOH . F 6 HOH A 169 174 174 HOH HOH . F 6 HOH A 170 175 175 HOH HOH . F 6 HOH A 171 176 176 HOH HOH . F 6 HOH A 172 177 177 HOH HOH . F 6 HOH A 173 178 178 HOH HOH . F 6 HOH A 174 179 179 HOH HOH . F 6 HOH A 175 180 180 HOH HOH . F 6 HOH A 176 181 181 HOH HOH . F 6 HOH A 177 182 182 HOH HOH . F 6 HOH A 178 183 183 HOH HOH . F 6 HOH A 179 184 184 HOH HOH . F 6 HOH A 180 185 185 HOH HOH . F 6 HOH A 181 186 186 HOH HOH . F 6 HOH A 182 187 187 HOH HOH . F 6 HOH A 183 188 188 HOH HOH . F 6 HOH A 184 189 189 HOH HOH . F 6 HOH A 185 190 190 HOH HOH . F 6 HOH A 186 191 191 HOH HOH . F 6 HOH A 187 192 192 HOH HOH . F 6 HOH A 188 193 193 HOH HOH . F 6 HOH A 189 194 194 HOH HOH . F 6 HOH A 190 195 195 HOH HOH . F 6 HOH A 191 196 196 HOH HOH . F 6 HOH A 192 197 197 HOH HOH . F 6 HOH A 193 198 198 HOH HOH . F 6 HOH A 194 199 199 HOH HOH . F 6 HOH A 195 200 200 HOH HOH . F 6 HOH A 196 201 201 HOH HOH . F 6 HOH A 197 202 202 HOH HOH . F 6 HOH A 198 203 203 HOH HOH . F 6 HOH A 199 204 204 HOH HOH . F 6 HOH A 200 205 205 HOH HOH . F 6 HOH A 201 206 206 HOH HOH . F 6 HOH A 202 207 207 HOH HOH . F 6 HOH A 203 208 208 HOH HOH . F 6 HOH A 204 209 209 HOH HOH . F 6 HOH A 205 210 210 HOH HOH . F 6 HOH A 206 211 211 HOH HOH . F 6 HOH A 207 212 212 HOH HOH . F 6 HOH A 208 213 213 HOH HOH . F 6 HOH A 209 214 214 HOH HOH . F 6 HOH A 210 215 215 HOH HOH . F 6 HOH A 211 216 216 HOH HOH . F 6 HOH A 212 217 217 HOH HOH . F 6 HOH A 213 218 218 HOH HOH . F 6 HOH A 214 219 219 HOH HOH . F 6 HOH A 215 220 220 HOH HOH . F 6 HOH A 216 221 221 HOH HOH . F 6 HOH A 217 222 222 HOH HOH . F 6 HOH A 218 223 223 HOH HOH . F 6 HOH A 219 224 224 HOH HOH . F 6 HOH A 220 225 225 HOH HOH . F 6 HOH A 221 226 226 HOH HOH . F 6 HOH A 222 227 227 HOH HOH . F 6 HOH A 223 228 228 HOH HOH . F 6 HOH A 224 229 229 HOH HOH . F 6 HOH A 225 230 230 HOH HOH . F 6 HOH A 226 231 231 HOH HOH . F 6 HOH A 227 232 232 HOH HOH . F 6 HOH A 228 233 233 HOH HOH . F 6 HOH A 229 234 234 HOH HOH . F 6 HOH A 230 235 235 HOH HOH . F 6 HOH A 231 236 236 HOH HOH . F 6 HOH A 232 237 237 HOH HOH . F 6 HOH A 233 238 238 HOH HOH . F 6 HOH A 234 239 239 HOH HOH . F 6 HOH A 235 240 240 HOH HOH . F 6 HOH A 236 241 241 HOH HOH . F 6 HOH A 237 242 242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 90.918 _atom_site.Cartn_y 50.645 _atom_site.Cartn_z 91.566 _atom_site.occupancy 0.77 _atom_site.B_iso_or_equiv 25.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 5 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #