data_1CG4 # _model_server_result.job_id 2sFzp_nSG8E4nDEyMo9Pzw _model_server_result.datetime_utc '2025-02-05 16:04:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":440}' # _entry.id 1CG4 # _exptl.entry_id 1CG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.186 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-O-PHOSPHORYL INOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CG4 _cell.length_a 80.21 _cell.length_b 80.21 _cell.length_c 157.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866214 0 -0.865837 0.5 0 0 0 -1 0 0 105.652404 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc2 A O GLY 40 A GLY 40 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc3 D O2B GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 D O2A GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 B MG MG . A MG 435 1_555 C O1 IMO . A IMO 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 B MG MG . A MG 435 1_555 E O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C10 H14 N4 O11 P2' _chem_comp.formula_weight 428.186 _chem_comp.id IMO _chem_comp.mon_nstd_flag . _chem_comp.name '6-O-PHOSPHORYL INOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 IMO sing 218 n n P O2 IMO sing 219 n n P O3 IMO doub 220 n n P O6 IMO sing 221 n n O1 HO1 IMO sing 222 n n C2 N3 IMO doub 223 n y C2 N1 IMO sing 224 n y C2 H2 IMO sing 225 n n C1' C2' IMO sing 226 n n C1' O4' IMO sing 227 n n C1' N9 IMO sing 228 n n C1' H1' IMO sing 229 n n C2' C3' IMO sing 230 n n C2' O2' IMO sing 231 n n C2' H2' IMO sing 232 n n C3' C4' IMO sing 233 n n C3' O3' IMO sing 234 n n C3' H3' IMO sing 235 n n C4' C5' IMO sing 236 n n C4' O4' IMO sing 237 n n C4' H4' IMO sing 238 n n C5' O5' IMO sing 239 n n C5' "H5'1" IMO sing 240 n n C5' "H5'2" IMO sing 241 n n O2 HO2 IMO sing 242 n n PA O1A IMO sing 243 n n PA O2A IMO sing 244 n n PA O3A IMO doub 245 n n PA O5' IMO sing 246 n n O1A HOA1 IMO sing 247 n n O2A HOA2 IMO sing 248 n n N9 C4 IMO sing 249 n y N9 C8 IMO sing 250 n y C4 N3 IMO sing 251 n y C4 C5 IMO doub 252 n y N1 C6 IMO doub 253 n y C6 O6 IMO sing 254 n n C6 C5 IMO sing 255 n y C5 N7 IMO sing 256 n y N7 C8 IMO doub 257 n y C8 H81 IMO sing 258 n n O2' "HO'2" IMO sing 259 n n O3' "HO'3" IMO sing 260 n n # _atom_sites.entry_id 1CG4 _atom_sites.fract_transf_matrix[1][1] 0.01252 _atom_sites.fract_transf_matrix[1][2] 0.00723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 435 435 MG MG . C 3 IMO A 1 440 440 IMO IPP . D 4 GDP A 1 432 432 GDP GDP . E 5 HOH A 1 441 1 HOH HOH . E 5 HOH A 2 442 3 HOH HOH . E 5 HOH A 3 443 4 HOH HOH . E 5 HOH A 4 444 5 HOH HOH . E 5 HOH A 5 445 6 HOH HOH . E 5 HOH A 6 446 7 HOH HOH . E 5 HOH A 7 447 8 HOH HOH . E 5 HOH A 8 448 9 HOH HOH . E 5 HOH A 9 449 10 HOH HOH . E 5 HOH A 10 450 11 HOH HOH . E 5 HOH A 11 451 12 HOH HOH . E 5 HOH A 12 452 13 HOH HOH . E 5 HOH A 13 453 14 HOH HOH . E 5 HOH A 14 454 15 HOH HOH . E 5 HOH A 15 455 16 HOH HOH . E 5 HOH A 16 456 17 HOH HOH . E 5 HOH A 17 457 18 HOH HOH . E 5 HOH A 18 458 19 HOH HOH . E 5 HOH A 19 459 20 HOH HOH . E 5 HOH A 20 460 21 HOH HOH . E 5 HOH A 21 461 22 HOH HOH . E 5 HOH A 22 462 23 HOH HOH . E 5 HOH A 23 463 24 HOH HOH . E 5 HOH A 24 464 25 HOH HOH . E 5 HOH A 25 465 26 HOH HOH . E 5 HOH A 26 466 27 HOH HOH . E 5 HOH A 27 467 28 HOH HOH . E 5 HOH A 28 468 29 HOH HOH . E 5 HOH A 29 469 30 HOH HOH . E 5 HOH A 30 470 31 HOH HOH . E 5 HOH A 31 471 32 HOH HOH . E 5 HOH A 32 472 33 HOH HOH . E 5 HOH A 33 473 34 HOH HOH . E 5 HOH A 34 474 35 HOH HOH . E 5 HOH A 35 475 36 HOH HOH . E 5 HOH A 36 476 37 HOH HOH . E 5 HOH A 37 477 38 HOH HOH . E 5 HOH A 38 478 39 HOH HOH . E 5 HOH A 39 479 40 HOH HOH . E 5 HOH A 40 480 41 HOH HOH . E 5 HOH A 41 481 42 HOH HOH . E 5 HOH A 42 482 43 HOH HOH . E 5 HOH A 43 483 44 HOH HOH . E 5 HOH A 44 484 45 HOH HOH . E 5 HOH A 45 485 46 HOH HOH . E 5 HOH A 46 486 47 HOH HOH . E 5 HOH A 47 487 48 HOH HOH . E 5 HOH A 48 488 50 HOH HOH . E 5 HOH A 49 489 51 HOH HOH . E 5 HOH A 50 490 52 HOH HOH . E 5 HOH A 51 491 53 HOH HOH . E 5 HOH A 52 492 54 HOH HOH . E 5 HOH A 53 493 55 HOH HOH . E 5 HOH A 54 494 56 HOH HOH . E 5 HOH A 55 495 57 HOH HOH . E 5 HOH A 56 496 58 HOH HOH . E 5 HOH A 57 497 59 HOH HOH . E 5 HOH A 58 498 60 HOH HOH . E 5 HOH A 59 499 61 HOH HOH . E 5 HOH A 60 500 62 HOH HOH . E 5 HOH A 61 501 63 HOH HOH . E 5 HOH A 62 502 64 HOH HOH . E 5 HOH A 63 503 65 HOH HOH . E 5 HOH A 64 504 67 HOH HOH . E 5 HOH A 65 505 68 HOH HOH . E 5 HOH A 66 506 69 HOH HOH . E 5 HOH A 67 507 71 HOH HOH . E 5 HOH A 68 508 72 HOH HOH . E 5 HOH A 69 509 73 HOH HOH . E 5 HOH A 70 510 74 HOH HOH . E 5 HOH A 71 511 76 HOH HOH . E 5 HOH A 72 512 77 HOH HOH . E 5 HOH A 73 513 78 HOH HOH . E 5 HOH A 74 514 79 HOH HOH . E 5 HOH A 75 515 80 HOH HOH . E 5 HOH A 76 516 81 HOH HOH . E 5 HOH A 77 517 82 HOH HOH . E 5 HOH A 78 518 83 HOH HOH . E 5 HOH A 79 519 84 HOH HOH . E 5 HOH A 80 520 85 HOH HOH . E 5 HOH A 81 521 86 HOH HOH . E 5 HOH A 82 522 87 HOH HOH . E 5 HOH A 83 523 88 HOH HOH . E 5 HOH A 84 524 89 HOH HOH . E 5 HOH A 85 525 90 HOH HOH . E 5 HOH A 86 526 91 HOH HOH . E 5 HOH A 87 527 92 HOH HOH . E 5 HOH A 88 528 93 HOH HOH . E 5 HOH A 89 529 94 HOH HOH . E 5 HOH A 90 530 95 HOH HOH . E 5 HOH A 91 531 96 HOH HOH . E 5 HOH A 92 532 97 HOH HOH . E 5 HOH A 93 533 99 HOH HOH . E 5 HOH A 94 534 100 HOH HOH . E 5 HOH A 95 535 101 HOH HOH . E 5 HOH A 96 536 102 HOH HOH . E 5 HOH A 97 537 103 HOH HOH . E 5 HOH A 98 538 104 HOH HOH . E 5 HOH A 99 539 105 HOH HOH . E 5 HOH A 100 540 106 HOH HOH . E 5 HOH A 101 541 107 HOH HOH . E 5 HOH A 102 542 108 HOH HOH . E 5 HOH A 103 543 109 HOH HOH . E 5 HOH A 104 544 110 HOH HOH . E 5 HOH A 105 545 111 HOH HOH . E 5 HOH A 106 546 112 HOH HOH . E 5 HOH A 107 547 113 HOH HOH . E 5 HOH A 108 548 114 HOH HOH . E 5 HOH A 109 549 115 HOH HOH . E 5 HOH A 110 550 116 HOH HOH . E 5 HOH A 111 551 117 HOH HOH . E 5 HOH A 112 552 118 HOH HOH . E 5 HOH A 113 553 119 HOH HOH . E 5 HOH A 114 554 120 HOH HOH . E 5 HOH A 115 555 121 HOH HOH . E 5 HOH A 116 556 122 HOH HOH . E 5 HOH A 117 557 123 HOH HOH . E 5 HOH A 118 558 124 HOH HOH . E 5 HOH A 119 559 125 HOH HOH . E 5 HOH A 120 560 126 HOH HOH . E 5 HOH A 121 561 127 HOH HOH . E 5 HOH A 122 562 128 HOH HOH . E 5 HOH A 123 563 129 HOH HOH . E 5 HOH A 124 564 130 HOH HOH . E 5 HOH A 125 565 131 HOH HOH . E 5 HOH A 126 566 132 HOH HOH . E 5 HOH A 127 567 133 HOH HOH . E 5 HOH A 128 568 134 HOH HOH . E 5 HOH A 129 569 135 HOH HOH . E 5 HOH A 130 570 136 HOH HOH . E 5 HOH A 131 571 137 HOH HOH . E 5 HOH A 132 572 138 HOH HOH . E 5 HOH A 133 573 139 HOH HOH . E 5 HOH A 134 574 141 HOH HOH . E 5 HOH A 135 575 142 HOH HOH . E 5 HOH A 136 576 143 HOH HOH . E 5 HOH A 137 577 144 HOH HOH . E 5 HOH A 138 578 145 HOH HOH . E 5 HOH A 139 579 146 HOH HOH . E 5 HOH A 140 580 147 HOH HOH . E 5 HOH A 141 581 148 HOH HOH . E 5 HOH A 142 582 149 HOH HOH . E 5 HOH A 143 583 150 HOH HOH . E 5 HOH A 144 584 151 HOH HOH . E 5 HOH A 145 585 152 HOH HOH . E 5 HOH A 146 586 153 HOH HOH . E 5 HOH A 147 587 154 HOH HOH . E 5 HOH A 148 588 155 HOH HOH . E 5 HOH A 149 589 156 HOH HOH . E 5 HOH A 150 590 157 HOH HOH . E 5 HOH A 151 591 158 HOH HOH . E 5 HOH A 152 592 159 HOH HOH . E 5 HOH A 153 593 160 HOH HOH . E 5 HOH A 154 594 161 HOH HOH . E 5 HOH A 155 595 162 HOH HOH . E 5 HOH A 156 596 163 HOH HOH . E 5 HOH A 157 597 164 HOH HOH . E 5 HOH A 158 598 166 HOH HOH . E 5 HOH A 159 599 167 HOH HOH . E 5 HOH A 160 600 168 HOH HOH . E 5 HOH A 161 601 169 HOH HOH . E 5 HOH A 162 602 170 HOH HOH . E 5 HOH A 163 603 171 HOH HOH . E 5 HOH A 164 604 172 HOH HOH . E 5 HOH A 165 605 173 HOH HOH . E 5 HOH A 166 606 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMO . . . C 3 -8.683 48.982 46.577 1 39.11 ? P IMO 440 A 1 HETATM 2 O O1 IMO . . . C 3 -7.743 49.415 45.52 1 39.59 ? O1 IMO 440 A 1 HETATM 3 C C2 IMO . . . C 3 -8.408 51.895 49.748 1 31.09 ? C2 IMO 440 A 1 HETATM 4 C C1' IMO . . . C 3 -12.082 53.464 51.209 1 35.39 ? C1' IMO 440 A 1 HETATM 5 C C2' IMO . . . C 3 -12.199 54.984 51.183 1 34.95 ? C2' IMO 440 A 1 HETATM 6 C C3' IMO . . . C 3 -12.994 55.196 52.454 1 38.6 ? C3' IMO 440 A 1 HETATM 7 C C4' IMO . . . C 3 -13.968 54.019 52.477 1 33.69 ? C4' IMO 440 A 1 HETATM 8 C C5' IMO . . . C 3 -15.234 54.339 51.88 1 32.49 ? C5' IMO 440 A 1 HETATM 9 O O2 IMO . . . C 3 -7.879 48.698 47.787 1 35.41 ? O2 IMO 440 A 1 HETATM 10 O O3 IMO . . . C 3 -9.39 47.698 46.145 1 39.76 ? O3 IMO 440 A 1 HETATM 11 P PA IMO . . . C 3 -16.387 54.151 49.54 1 37.75 ? PA IMO 440 A 1 HETATM 12 O O1A IMO . . . C 3 -16.123 52.71 49.316 1 40.97 ? O1A IMO 440 A 1 HETATM 13 O O2A IMO . . . C 3 -16.297 54.84 48.217 1 40.18 ? O2A IMO 440 A 1 HETATM 14 O O3A IMO . . . C 3 -17.745 54.319 50.115 1 37.4 ? O3A IMO 440 A 1 HETATM 15 O O5' IMO . . . C 3 -15.2 54.724 50.51 1 32.36 ? O5' IMO 440 A 1 HETATM 16 O O4' IMO . . . C 3 -13.366 52.926 51.76 1 33.66 ? O4' IMO 440 A 1 HETATM 17 N N9 IMO . . . C 3 -11.685 52.999 49.952 1 33.62 ? N9 IMO 440 A 1 HETATM 18 C C4 IMO . . . C 3 -10.487 52.43 49.623 1 29.65 ? C4 IMO 440 A 1 HETATM 19 N N3 IMO . . . C 3 -9.38 52.544 50.266 1 27.21 ? N3 IMO 440 A 1 HETATM 20 N N1 IMO . . . C 3 -8.558 51.176 48.655 1 34.44 ? N1 IMO 440 A 1 HETATM 21 C C6 IMO . . . C 3 -9.656 51.018 47.928 1 33.17 ? C6 IMO 440 A 1 HETATM 22 O O6 IMO . . . C 3 -9.802 50.147 46.809 1 40.9 ? O6 IMO 440 A 1 HETATM 23 C C5 IMO . . . C 3 -10.697 51.727 48.482 1 33.8 ? C5 IMO 440 A 1 HETATM 24 N N7 IMO . . . C 3 -12.013 51.831 48.031 1 31.37 ? N7 IMO 440 A 1 HETATM 25 C C8 IMO . . . C 3 -12.538 52.582 48.924 1 32.26 ? C8 IMO 440 A 1 HETATM 26 O O2' IMO . . . C 3 -10.927 55.461 51.35 1 36.2 ? O2' IMO 440 A 1 HETATM 27 O O3' IMO . . . C 3 -12.022 55.124 53.554 1 39.11 ? O3' IMO 440 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #