data_1CGH # _model_server_result.job_id I-goXb9zprqOExFLNwVLCg _model_server_result.datetime_utc '2024-10-19 03:38:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1CGH # _exptl.entry_id 1CGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 497.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-carboxypropanoyl)-L-valyl-N-{(1R)-1-[(S)-hydroxy(oxido)phosphanyl]-2-phenylethyl}-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CGH _cell.length_a 40.04 _cell.length_b 63.61 _cell.length_c 79.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 187 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 166 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B P 1ZG . A 1ZG 1 1_555 A OG SER 181 A SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? # _chem_comp.formula 'C22 H32 N3 O8 P' _chem_comp.formula_weight 497.479 _chem_comp.id 1ZG _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-carboxypropanoyl)-L-valyl-N-{(1R)-1-[(S)-hydroxy(oxido)phosphanyl]-2-phenylethyl}-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 1ZG doub 1 n n C1 O2 1ZG sing 2 n n C1 C2 1ZG sing 3 n n O2 HO2 1ZG sing 4 n n C2 C3 1ZG sing 5 n n C2 H21 1ZG sing 6 n n C2 H22 1ZG sing 7 n n C3 C4 1ZG sing 8 n n C3 H31 1ZG sing 9 n n C3 H32 1ZG sing 10 n n C4 O3 1ZG doub 11 n n N CA 1ZG sing 12 n n N H 1ZG sing 13 n n CA C 1ZG sing 14 n n CA CB 1ZG sing 15 n n CA HA 1ZG sing 16 n n C O 1ZG doub 17 n n CB CG1 1ZG sing 18 n n CB CG2 1ZG sing 19 n n CB HB 1ZG sing 20 n n CG1 HG11 1ZG sing 21 n n CG1 HG12 1ZG sing 22 n n CG1 HG13 1ZG sing 23 n n CG2 HG21 1ZG sing 24 n n CG2 HG22 1ZG sing 25 n n CG2 HG23 1ZG sing 26 n n N1 CA1 1ZG sing 27 n n N1 CD 1ZG sing 28 n n CA1 C5 1ZG sing 29 n n CA1 CB1 1ZG sing 30 n n CA1 HA1 1ZG sing 31 n n C5 O4 1ZG doub 32 n n CB1 CG 1ZG sing 33 n n CB1 HB2 1ZG sing 34 n n CB1 HB3 1ZG sing 35 n n CG CD 1ZG sing 36 n n CG HG2 1ZG sing 37 n n CG HG3 1ZG sing 38 n n CD HD2 1ZG sing 39 n n CD HD3 1ZG sing 40 n n N2 CA2 1ZG sing 41 n n N2 HN2 1ZG sing 42 n n CA2 P 1ZG sing 43 n n CA2 CB2 1ZG sing 44 n n CA2 HA2 1ZG sing 45 n n P O1P 1ZG doub 46 n n P O2P 1ZG sing 47 n n P OGG 1ZG sing 48 n n O2P HOP2 1ZG sing 49 n n CB2 CG3 1ZG sing 50 n n CB2 HB1 1ZG sing 51 n n CB2 HB21 1ZG sing 52 n n CG3 CD1 1ZG doub 53 n y CG3 CD2 1ZG sing 54 n y CD1 CE1 1ZG sing 55 n y CD1 HD1 1ZG sing 56 n n CD2 CE2 1ZG doub 57 n y CD2 HD21 1ZG sing 58 n n CE1 CZ 1ZG doub 59 n y CE1 HE1 1ZG sing 60 n n CE2 CZ 1ZG sing 61 n y CE2 HE2 1ZG sing 62 n n CZ HZ 1ZG sing 63 n n C4 N 1ZG sing 64 n n C N1 1ZG sing 65 n n C5 N2 1ZG sing 66 n n OGG H1 1ZG sing 67 n n # _atom_sites.entry_id 1CGH _atom_sites.fract_transf_matrix[1][1] 0.024975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1ZG A 1 1 1 1ZG SIN . C 3 HOH A 1 245 1 HOH HOH . C 3 HOH A 2 246 2 HOH HOH . C 3 HOH A 3 247 3 HOH HOH . C 3 HOH A 4 248 4 HOH HOH . C 3 HOH A 5 249 5 HOH HOH . C 3 HOH A 6 250 6 HOH HOH . C 3 HOH A 7 251 7 HOH HOH . C 3 HOH A 8 252 8 HOH HOH . C 3 HOH A 9 253 9 HOH HOH . C 3 HOH A 10 254 10 HOH HOH . C 3 HOH A 11 255 11 HOH HOH . C 3 HOH A 12 256 12 HOH HOH . C 3 HOH A 13 257 13 HOH HOH . C 3 HOH A 14 258 14 HOH HOH . C 3 HOH A 15 259 15 HOH HOH . C 3 HOH A 16 260 16 HOH HOH . C 3 HOH A 17 261 17 HOH HOH . C 3 HOH A 18 262 18 HOH HOH . C 3 HOH A 19 263 19 HOH HOH . C 3 HOH A 20 264 20 HOH HOH . C 3 HOH A 21 265 21 HOH HOH . C 3 HOH A 22 266 22 HOH HOH . C 3 HOH A 23 267 23 HOH HOH . C 3 HOH A 24 268 24 HOH HOH . C 3 HOH A 25 269 25 HOH HOH . C 3 HOH A 26 270 26 HOH HOH . C 3 HOH A 27 271 27 HOH HOH . C 3 HOH A 28 272 28 HOH HOH . C 3 HOH A 29 273 29 HOH HOH . C 3 HOH A 30 274 30 HOH HOH . C 3 HOH A 31 275 31 HOH HOH . C 3 HOH A 32 276 32 HOH HOH . C 3 HOH A 33 277 33 HOH HOH . C 3 HOH A 34 278 34 HOH HOH . C 3 HOH A 35 279 35 HOH HOH . C 3 HOH A 36 280 36 HOH HOH . C 3 HOH A 37 281 37 HOH HOH . C 3 HOH A 38 282 38 HOH HOH . C 3 HOH A 39 283 39 HOH HOH . C 3 HOH A 40 284 40 HOH HOH . C 3 HOH A 41 285 41 HOH HOH . C 3 HOH A 42 286 42 HOH HOH . C 3 HOH A 43 287 43 HOH HOH . C 3 HOH A 44 288 44 HOH HOH . C 3 HOH A 45 289 45 HOH HOH . C 3 HOH A 46 290 47 HOH HOH . C 3 HOH A 47 291 48 HOH HOH . C 3 HOH A 48 292 49 HOH HOH . C 3 HOH A 49 293 50 HOH HOH . C 3 HOH A 50 294 51 HOH HOH . C 3 HOH A 51 295 52 HOH HOH . C 3 HOH A 52 296 53 HOH HOH . C 3 HOH A 53 297 54 HOH HOH . C 3 HOH A 54 298 55 HOH HOH . C 3 HOH A 55 299 56 HOH HOH . C 3 HOH A 56 300 57 HOH HOH . C 3 HOH A 57 301 58 HOH HOH . C 3 HOH A 58 302 59 HOH HOH . C 3 HOH A 59 303 60 HOH HOH . C 3 HOH A 60 304 61 HOH HOH . C 3 HOH A 61 305 62 HOH HOH . C 3 HOH A 62 306 63 HOH HOH . C 3 HOH A 63 307 64 HOH HOH . C 3 HOH A 64 308 65 HOH HOH . C 3 HOH A 65 309 66 HOH HOH . C 3 HOH A 66 310 67 HOH HOH . C 3 HOH A 67 311 68 HOH HOH . C 3 HOH A 68 312 69 HOH HOH . C 3 HOH A 69 313 70 HOH HOH . C 3 HOH A 70 314 71 HOH HOH . C 3 HOH A 71 315 72 HOH HOH . C 3 HOH A 72 316 73 HOH HOH . C 3 HOH A 73 317 74 HOH HOH . C 3 HOH A 74 318 75 HOH HOH . C 3 HOH A 75 319 76 HOH HOH . C 3 HOH A 76 320 77 HOH HOH . C 3 HOH A 77 321 78 HOH HOH . C 3 HOH A 78 322 79 HOH HOH . C 3 HOH A 79 323 80 HOH HOH . C 3 HOH A 80 324 81 HOH HOH . C 3 HOH A 81 325 82 HOH HOH . C 3 HOH A 82 326 83 HOH HOH . C 3 HOH A 83 327 84 HOH HOH . C 3 HOH A 84 328 85 HOH HOH . C 3 HOH A 85 329 86 HOH HOH . C 3 HOH A 86 330 87 HOH HOH . C 3 HOH A 87 331 88 HOH HOH . C 3 HOH A 88 332 89 HOH HOH . C 3 HOH A 89 333 90 HOH HOH . C 3 HOH A 90 334 91 HOH HOH . C 3 HOH A 91 335 92 HOH HOH . C 3 HOH A 92 336 93 HOH HOH . C 3 HOH A 93 337 94 HOH HOH . C 3 HOH A 94 338 95 HOH HOH . C 3 HOH A 95 339 96 HOH HOH . C 3 HOH A 96 340 97 HOH HOH . C 3 HOH A 97 341 98 HOH HOH . C 3 HOH A 98 342 99 HOH HOH . C 3 HOH A 99 343 100 HOH HOH . C 3 HOH A 100 344 101 HOH HOH . C 3 HOH A 101 345 102 HOH HOH . C 3 HOH A 102 346 103 HOH HOH . C 3 HOH A 103 347 104 HOH HOH . C 3 HOH A 104 348 105 HOH HOH . C 3 HOH A 105 349 106 HOH HOH . C 3 HOH A 106 350 107 HOH HOH . C 3 HOH A 107 351 109 HOH HOH . C 3 HOH A 108 352 110 HOH HOH . C 3 HOH A 109 353 112 HOH HOH . C 3 HOH A 110 354 113 HOH HOH . C 3 HOH A 111 355 114 HOH HOH . C 3 HOH A 112 356 115 HOH HOH . C 3 HOH A 113 357 116 HOH HOH . C 3 HOH A 114 358 117 HOH HOH . C 3 HOH A 115 359 118 HOH HOH . C 3 HOH A 116 360 119 HOH HOH . C 3 HOH A 117 361 120 HOH HOH . C 3 HOH A 118 362 121 HOH HOH . C 3 HOH A 119 363 122 HOH HOH . C 3 HOH A 120 364 123 HOH HOH . C 3 HOH A 121 365 124 HOH HOH . C 3 HOH A 122 366 125 HOH HOH . C 3 HOH A 123 367 126 HOH HOH . C 3 HOH A 124 368 127 HOH HOH . C 3 HOH A 125 369 128 HOH HOH . C 3 HOH A 126 370 129 HOH HOH . C 3 HOH A 127 371 130 HOH HOH . C 3 HOH A 128 372 131 HOH HOH . C 3 HOH A 129 373 132 HOH HOH . C 3 HOH A 130 374 133 HOH HOH . C 3 HOH A 131 375 134 HOH HOH . C 3 HOH A 132 376 135 HOH HOH . C 3 HOH A 133 377 136 HOH HOH . C 3 HOH A 134 378 137 HOH HOH . C 3 HOH A 135 379 138 HOH HOH . C 3 HOH A 136 380 139 HOH HOH . C 3 HOH A 137 381 140 HOH HOH . C 3 HOH A 138 382 141 HOH HOH . C 3 HOH A 139 383 142 HOH HOH . C 3 HOH A 140 384 143 HOH HOH . C 3 HOH A 141 385 144 HOH HOH . C 3 HOH A 142 386 145 HOH HOH . C 3 HOH A 143 387 146 HOH HOH . C 3 HOH A 144 388 147 HOH HOH . C 3 HOH A 145 389 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1ZG . . . B 2 13.529 47.374 -0.405 1 27.94 ? C1 1ZG 1 A 1 HETATM 2 O O1 1ZG . . . B 2 12.629 47.356 -1.278 1 28.06 ? O1 1ZG 1 A 1 HETATM 3 O O2 1ZG . . . B 2 14.879 47.872 -0.578 1 27.57 ? O2 1ZG 1 A 1 HETATM 4 C C2 1ZG . . . B 2 13.079 46.708 0.91 1 29.27 ? C2 1ZG 1 A 1 HETATM 5 C C3 1ZG . . . B 2 14.191 45.931 1.666 1 27.08 ? C3 1ZG 1 A 1 HETATM 6 C C4 1ZG . . . B 2 13.679 45.298 2.936 1 26.23 ? C4 1ZG 1 A 1 HETATM 7 O O3 1ZG . . . B 2 13.739 45.94 3.995 1 24.53 ? O3 1ZG 1 A 1 HETATM 8 N N 1ZG . . . B 2 12.81 44.301 2.755 1 24.08 ? N 1ZG 1 A 1 HETATM 9 C CA 1ZG . . . B 2 12.041 43.758 3.871 1 24.31 ? CA 1ZG 1 A 1 HETATM 10 C C 1ZG . . . B 2 12.652 42.409 4.28 1 22.86 ? C 1ZG 1 A 1 HETATM 11 O O 1ZG . . . B 2 13.453 41.848 3.526 1 22.67 ? O 1ZG 1 A 1 HETATM 12 C CB 1ZG . . . B 2 10.489 43.627 3.521 1 22.89 ? CB 1ZG 1 A 1 HETATM 13 C CG1 1ZG . . . B 2 10.223 42.582 2.475 1 24.68 ? CG1 1ZG 1 A 1 HETATM 14 C CG2 1ZG . . . B 2 9.717 43.291 4.742 1 24.76 ? CG2 1ZG 1 A 1 HETATM 15 N N1 1ZG . . . B 2 13.052 42.111 5.534 1 19.18 ? N1 1ZG 1 A 1 HETATM 16 C CA1 1ZG . . . B 2 13.481 40.773 5.96 1 17.93 ? CA1 1ZG 1 A 1 HETATM 17 C C5 1ZG . . . B 2 12.541 39.659 5.491 1 17.61 ? C5 1ZG 1 A 1 HETATM 18 O O4 1ZG . . . B 2 11.318 39.848 5.472 1 16.21 ? O4 1ZG 1 A 1 HETATM 19 C CB1 1ZG . . . B 2 13.559 40.901 7.489 1 18.43 ? CB1 1ZG 1 A 1 HETATM 20 C CG 1ZG . . . B 2 12.652 41.991 7.819 1 20.97 ? CG 1ZG 1 A 1 HETATM 21 C CD 1ZG . . . B 2 12.789 42.971 6.703 1 20 ? CD 1ZG 1 A 1 HETATM 22 N N2 1ZG . . . B 2 13.115 38.513 5.09 1 17.4 ? N2 1ZG 1 A 1 HETATM 23 C CA2 1ZG . . . B 2 12.551 37.67 4.736 1 16.49 ? CA2 1ZG 1 A 1 HETATM 24 P P 1ZG . . . B 2 12.444 36.281 5.881 1 15.81 ? P 1ZG 1 A 1 HETATM 25 O O1P 1ZG . . . B 2 11.505 35.077 5.533 1 15.17 ? O1P 1ZG 1 A 1 HETATM 26 O O2P 1ZG . . . B 2 11.794 36.747 7.154 1 16.32 ? O2P 1ZG 1 A 1 HETATM 27 C CB2 1ZG . . . B 2 12.836 36.982 3.368 1 15.29 ? CB2 1ZG 1 A 1 HETATM 28 C CG3 1ZG . . . B 2 12.673 37.769 2.074 1 18.07 ? CG3 1ZG 1 A 1 HETATM 29 C CD1 1ZG . . . B 2 13.603 37.65 1.049 1 18.22 ? CD1 1ZG 1 A 1 HETATM 30 C CD2 1ZG . . . B 2 11.584 38.639 1.894 1 19.33 ? CD2 1ZG 1 A 1 HETATM 31 C CE1 1ZG . . . B 2 13.46 38.393 -0.158 1 21.13 ? CE1 1ZG 1 A 1 HETATM 32 C CE2 1ZG . . . B 2 11.432 39.379 0.7 1 22.05 ? CE2 1ZG 1 A 1 HETATM 33 C CZ 1ZG . . . B 2 12.378 39.251 -0.325 1 19.93 ? CZ 1ZG 1 A 1 HETATM 34 H H21 1ZG . . . B 2 12.228 46.057 0.737 1 20 ? H21 1ZG 1 A 1 HETATM 35 H H22 1ZG . . . B 2 12.719 47.524 1.529 1 20 ? H22 1ZG 1 A 1 HETATM 36 H H31 1ZG . . . B 2 15.003 46.588 1.933 1 20 ? H31 1ZG 1 A 1 HETATM 37 H H32 1ZG . . . B 2 14.713 45.204 1.066 1 20 ? H32 1ZG 1 A 1 HETATM 38 H H 1ZG . . . B 2 12.973 43.729 1.976 1 20 ? H 1ZG 1 A 1 HETATM 39 H HN2 1ZG . . . B 2 14.097 38.432 5.117 1 20 ? HN2 1ZG 1 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #