data_1CGN # _model_server_result.job_id Uiqrptxv5hhHGWofeRuYiw _model_server_result.datetime_utc '2024-12-22 02:31:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":128}' # _entry.id 1CGN # _exptl.entry_id 1CGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CGN _cell.length_a 54.6 _cell.length_b 54.6 _cell.length_c 180.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1CGN _atom_sites.fract_transf_matrix[1][1] 0.018315 _atom_sites.fract_transf_matrix[1][2] 0.010574 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 128 128 HEC HEM . C 3 HOH A 1 200 200 HOH HOH . C 3 HOH A 2 201 201 HOH HOH . C 3 HOH A 3 202 202 HOH HOH . C 3 HOH A 4 203 203 HOH HOH . C 3 HOH A 5 204 204 HOH HOH . C 3 HOH A 6 205 205 HOH HOH . C 3 HOH A 7 206 206 HOH HOH . C 3 HOH A 8 207 207 HOH HOH . C 3 HOH A 9 208 208 HOH HOH . C 3 HOH A 10 209 209 HOH HOH . C 3 HOH A 11 210 210 HOH HOH . C 3 HOH A 12 211 211 HOH HOH . C 3 HOH A 13 212 212 HOH HOH . C 3 HOH A 14 213 213 HOH HOH . C 3 HOH A 15 214 214 HOH HOH . C 3 HOH A 16 215 215 HOH HOH . C 3 HOH A 17 216 216 HOH HOH . C 3 HOH A 18 217 217 HOH HOH . C 3 HOH A 19 218 218 HOH HOH . C 3 HOH A 20 219 219 HOH HOH . C 3 HOH A 21 220 220 HOH HOH . C 3 HOH A 22 221 221 HOH HOH . C 3 HOH A 23 222 222 HOH HOH . C 3 HOH A 24 223 223 HOH HOH . C 3 HOH A 25 224 224 HOH HOH . C 3 HOH A 26 225 225 HOH HOH . C 3 HOH A 27 226 226 HOH HOH . C 3 HOH A 28 227 227 HOH HOH . C 3 HOH A 29 228 228 HOH HOH . C 3 HOH A 30 229 229 HOH HOH . C 3 HOH A 31 230 230 HOH HOH . C 3 HOH A 32 231 231 HOH HOH . C 3 HOH A 33 232 232 HOH HOH . C 3 HOH A 34 233 233 HOH HOH . C 3 HOH A 35 234 234 HOH HOH . C 3 HOH A 36 235 235 HOH HOH . C 3 HOH A 37 236 236 HOH HOH . C 3 HOH A 38 237 237 HOH HOH . C 3 HOH A 39 238 238 HOH HOH . C 3 HOH A 40 239 239 HOH HOH . C 3 HOH A 41 240 240 HOH HOH . C 3 HOH A 42 241 241 HOH HOH . C 3 HOH A 43 242 242 HOH HOH . C 3 HOH A 44 243 243 HOH HOH . C 3 HOH A 45 244 244 HOH HOH . C 3 HOH A 46 245 245 HOH HOH . C 3 HOH A 47 246 246 HOH HOH . C 3 HOH A 48 247 247 HOH HOH . C 3 HOH A 49 248 248 HOH HOH . C 3 HOH A 50 249 249 HOH HOH . C 3 HOH A 51 250 250 HOH HOH . C 3 HOH A 52 251 251 HOH HOH . C 3 HOH A 53 252 252 HOH HOH . C 3 HOH A 54 253 253 HOH HOH . C 3 HOH A 55 254 254 HOH HOH . C 3 HOH A 56 255 255 HOH HOH . C 3 HOH A 57 256 256 HOH HOH . C 3 HOH A 58 257 257 HOH HOH . C 3 HOH A 59 258 258 HOH HOH . C 3 HOH A 60 259 259 HOH HOH . C 3 HOH A 61 260 260 HOH HOH . C 3 HOH A 62 261 261 HOH HOH . C 3 HOH A 63 262 262 HOH HOH . C 3 HOH A 64 263 263 HOH HOH . C 3 HOH A 65 264 264 HOH HOH . C 3 HOH A 66 265 265 HOH HOH . C 3 HOH A 67 266 266 HOH HOH . C 3 HOH A 68 267 267 HOH HOH . C 3 HOH A 69 268 268 HOH HOH . C 3 HOH A 70 269 269 HOH HOH . C 3 HOH A 71 270 270 HOH HOH . C 3 HOH A 72 271 271 HOH HOH . C 3 HOH A 73 272 272 HOH HOH . C 3 HOH A 74 273 273 HOH HOH . C 3 HOH A 75 274 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 10.629 33.221 38.304 1 19.6 ? FE HEC 128 A 1 HETATM 2 C CHA HEC . . . B 2 8.831 36.146 38.431 1 18.42 ? CHA HEC 128 A 1 HETATM 3 C CHB HEC . . . B 2 10.949 33.249 41.617 1 9.85 ? CHB HEC 128 A 1 HETATM 4 C CHC HEC . . . B 2 11.827 29.977 38.185 1 12.72 ? CHC HEC 128 A 1 HETATM 5 C CHD HEC . . . B 2 10.06 33.08 34.929 1 18.52 ? CHD HEC 128 A 1 HETATM 6 N NA HEC . . . B 2 10.052 34.428 39.706 1 23.5 ? NA HEC 128 A 1 HETATM 7 C C1A HEC . . . B 2 9.258 35.571 39.598 1 20.09 ? C1A HEC 128 A 1 HETATM 8 C C2A HEC . . . B 2 8.973 36.064 40.926 1 20.93 ? C2A HEC 128 A 1 HETATM 9 C C3A HEC . . . B 2 9.574 35.271 41.795 1 27.66 ? C3A HEC 128 A 1 HETATM 10 C C4A HEC . . . B 2 10.227 34.241 41.055 1 26.84 ? C4A HEC 128 A 1 HETATM 11 C CMA HEC . . . B 2 9.575 35.327 43.325 1 13.84 ? CMA HEC 128 A 1 HETATM 12 C CAA HEC . . . B 2 8.139 37.286 41.207 1 14.01 ? CAA HEC 128 A 1 HETATM 13 C CBA HEC . . . B 2 6.683 37.043 41.615 1 26.46 ? CBA HEC 128 A 1 HETATM 14 C CGA HEC . . . B 2 5.975 38.293 42.057 1 21.03 ? CGA HEC 128 A 1 HETATM 15 O O1A HEC . . . B 2 5.665 39.119 41.165 1 31.75 ? O1A HEC 128 A 1 HETATM 16 O O2A HEC . . . B 2 5.807 38.447 43.275 1 40.97 ? O2A HEC 128 A 1 HETATM 17 N NB HEC . . . B 2 11.194 31.863 39.64 1 22.58 ? NB HEC 128 A 1 HETATM 18 C C1B HEC . . . B 2 11.34 32.103 40.985 1 14.49 ? C1B HEC 128 A 1 HETATM 19 C C2B HEC . . . B 2 12.02 31.004 41.612 1 25.81 ? C2B HEC 128 A 1 HETATM 20 C C3B HEC . . . B 2 12.25 30.083 40.669 1 19.8 ? C3B HEC 128 A 1 HETATM 21 C C4B HEC . . . B 2 11.751 30.61 39.413 1 16.6 ? C4B HEC 128 A 1 HETATM 22 C CMB HEC . . . B 2 12.367 30.976 43.136 1 20.62 ? CMB HEC 128 A 1 HETATM 23 C CAB HEC . . . B 2 12.951 28.686 40.81 1 31.89 ? CAB HEC 128 A 1 HETATM 24 C CBB HEC . . . B 2 12.679 27.887 41.893 1 17.09 ? CBB HEC 128 A 1 HETATM 25 N NC HEC . . . B 2 10.856 31.838 36.872 1 16.16 ? NC HEC 128 A 1 HETATM 26 C C1C HEC . . . B 2 11.427 30.578 37.005 1 28.15 ? C1C HEC 128 A 1 HETATM 27 C C2C HEC . . . B 2 11.523 29.947 35.71 1 15.82 ? C2C HEC 128 A 1 HETATM 28 C C3C HEC . . . B 2 11.053 30.794 34.79 1 25.53 ? C3C HEC 128 A 1 HETATM 29 C C4C HEC . . . B 2 10.596 31.974 35.509 1 16.34 ? C4C HEC 128 A 1 HETATM 30 C CMC HEC . . . B 2 12.094 28.536 35.526 1 12.47 ? CMC HEC 128 A 1 HETATM 31 C CAC HEC . . . B 2 10.92 30.57 33.234 1 23.29 ? CAC HEC 128 A 1 HETATM 32 C CBC HEC . . . B 2 10.519 29.339 32.75 1 16.32 ? CBC HEC 128 A 1 HETATM 33 N ND HEC . . . B 2 9.629 34.349 36.955 1 18.27 ? ND HEC 128 A 1 HETATM 34 C C1D HEC . . . B 2 9.569 34.165 35.586 1 15.44 ? C1D HEC 128 A 1 HETATM 35 C C2D HEC . . . B 2 8.94 35.32 34.968 1 23.12 ? C2D HEC 128 A 1 HETATM 36 C C3D HEC . . . B 2 8.572 36.131 35.938 1 18.36 ? C3D HEC 128 A 1 HETATM 37 C C4D HEC . . . B 2 9.008 35.57 37.185 1 19.49 ? C4D HEC 128 A 1 HETATM 38 C CMD HEC . . . B 2 8.68 35.481 33.438 1 10.19 ? CMD HEC 128 A 1 HETATM 39 C CAD HEC . . . B 2 7.784 37.438 35.828 1 17.09 ? CAD HEC 128 A 1 HETATM 40 C CBD HEC . . . B 2 6.278 37.157 35.995 1 13.56 ? CBD HEC 128 A 1 HETATM 41 C CGD HEC . . . B 2 5.342 38.336 35.86 1 23.51 ? CGD HEC 128 A 1 HETATM 42 O O1D HEC . . . B 2 4.408 38.207 35.036 1 15.83 ? O1D HEC 128 A 1 HETATM 43 O O2D HEC . . . B 2 5.527 39.342 36.605 1 19.92 ? O2D HEC 128 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #