data_1CH4 # _model_server_result.job_id tb3m8eI6UzBUs9lJ00lDRg _model_server_result.datetime_utc '2025-02-05 15:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ch4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":147}' # _entry.id 1CH4 # _exptl.entry_id 1CH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.96 _cell.angle_gamma 90 _cell.entry_id 1CH4 _cell.length_a 62.87 _cell.length_b 81.31 _cell.length_c 55.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 92 A HIS 92 1_555 E FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 E FE HEM . A HEM 147 1_555 F C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 E FE HEM . A HEM 147 1_555 F O CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 C NE2 HIS 92 C HIS 92 1_555 I FE HEM . C HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc8 I FE HEM . C HEM 147 1_555 J C CMO . C CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc9 I FE HEM . C HEM 147 1_555 J O CMO . C CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc11 K FE HEM . D HEM 147 1_555 L C CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc12 K FE HEM . D HEM 147 1_555 L O CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1CH4 _atom_sites.fract_transf_matrix[1][1] 0.015906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 147 147 HEM HEM . F 3 CMO A 1 148 147 CMO CMO . G 2 HEM B 1 147 147 HEM HEM . H 3 CMO B 1 148 147 CMO CMO . I 2 HEM C 1 147 147 HEM HEM . J 3 CMO C 1 148 147 CMO CMO . K 2 HEM D 1 147 147 HEM HEM . L 3 CMO D 1 148 147 CMO CMO . M 4 HOH A 1 200 200 HOH HOH . M 4 HOH A 2 201 201 HOH HOH . M 4 HOH A 3 216 216 HOH HOH . M 4 HOH A 4 217 217 HOH HOH . M 4 HOH A 5 229 229 HOH HOH . M 4 HOH A 6 233 233 HOH HOH . M 4 HOH A 7 236 236 HOH HOH . M 4 HOH A 8 241 241 HOH HOH . N 4 HOH B 1 208 208 HOH HOH . N 4 HOH B 2 212 212 HOH HOH . N 4 HOH B 3 215 215 HOH HOH . N 4 HOH B 4 220 220 HOH HOH . N 4 HOH B 5 221 221 HOH HOH . N 4 HOH B 6 222 222 HOH HOH . N 4 HOH B 7 237 237 HOH HOH . N 4 HOH B 8 238 238 HOH HOH . O 4 HOH C 1 202 202 HOH HOH . O 4 HOH C 2 203 203 HOH HOH . O 4 HOH C 3 204 204 HOH HOH . O 4 HOH C 4 205 205 HOH HOH . O 4 HOH C 5 206 206 HOH HOH . O 4 HOH C 6 207 207 HOH HOH . O 4 HOH C 7 209 209 HOH HOH . O 4 HOH C 8 210 210 HOH HOH . O 4 HOH C 9 211 211 HOH HOH . O 4 HOH C 10 213 213 HOH HOH . O 4 HOH C 11 214 214 HOH HOH . O 4 HOH C 12 218 218 HOH HOH . O 4 HOH C 13 219 219 HOH HOH . P 4 HOH D 1 223 223 HOH HOH . P 4 HOH D 2 224 224 HOH HOH . P 4 HOH D 3 225 225 HOH HOH . P 4 HOH D 4 226 226 HOH HOH . P 4 HOH D 5 227 227 HOH HOH . P 4 HOH D 6 228 228 HOH HOH . P 4 HOH D 7 230 230 HOH HOH . P 4 HOH D 8 231 231 HOH HOH . P 4 HOH D 9 232 232 HOH HOH . P 4 HOH D 10 234 234 HOH HOH . P 4 HOH D 11 235 235 HOH HOH . P 4 HOH D 12 239 239 HOH HOH . P 4 HOH D 13 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 16.796 -15.394 29.375 1 25.88 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . G 2 12.946 -12.567 29.298 1 23.16 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . G 2 14.228 -10.881 25.006 1 16.68 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . G 2 17.911 -13.939 24.92 1 22.51 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . G 2 15.648 -14.735 29.749 1 25.48 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . G 2 14.926 -14.95 30.994 1 31.76 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . G 2 13.773 -14.263 30.888 1 27.64 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . G 2 13.838 -13.545 29.648 1 24.63 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . G 2 12.612 -14.265 31.869 1 19.59 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . G 2 15.442 -15.621 32.266 1 42.47 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . G 2 14.929 -17.031 32.568 1 60.36 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . G 2 15.695 -18.144 31.88 1 70.17 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . G 2 15.091 -18.879 31.094 1 78.46 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . G 2 16.89 -18.248 32.126 1 72.29 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . G 2 13.004 -11.807 28.159 1 20.13 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . G 2 11.976 -10.87 27.785 1 21.24 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . G 2 12.272 -10.389 26.557 1 24.14 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . G 2 13.554 -11.036 26.202 1 21.45 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . G 2 10.755 -10.496 28.625 1 10.25 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . G 2 11.386 -9.598 25.816 1 28.29 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . G 2 11.694 -8.696 24.721 1 29.95 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . G 2 15.349 -11.577 24.608 1 14.76 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . G 2 15.919 -11.481 23.29 1 12.27 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . G 2 16.961 -12.345 23.243 1 11.21 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . G 2 17.012 -12.964 24.553 1 17.46 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . G 2 15.415 -10.572 22.183 1 11.44 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . G 2 17.847 -12.576 22.195 1 7.17 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . G 2 17.469 -13.041 20.87 1 7.13 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . G 2 17.918 -14.621 26.123 1 24.31 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . G 2 18.837 -15.689 26.444 1 23.76 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . G 2 18.512 -16.108 27.688 1 29.42 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . G 2 17.425 -15.268 28.153 1 28.38 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . G 2 19.984 -16.198 25.579 1 21.14 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . G 2 19.122 -17.291 28.426 1 31.27 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . G 2 18.372 -18.578 28.101 1 42.67 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . G 2 18.869 -19.859 28.748 1 48.62 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . G 2 20.076 -20.097 28.785 1 50.29 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . G 2 18.015 -20.638 29.163 1 56.77 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . G 2 14.979 -13.842 28.934 1 21.51 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . G 2 13.976 -11.915 27.192 1 22.45 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . G 2 16.012 -12.499 25.381 1 17.68 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . G 2 17.036 -14.382 27.167 1 22.51 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . G 2 15.554 -13.105 27.197 1 24.21 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #