data_1CIE # _model_server_result.job_id LhLwZb5_JPL5mSvkyNNHLA _model_server_result.datetime_utc '2024-10-14 07:27:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1CIE # _exptl.entry_id 1CIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CIE _cell.length_a 36.1 _cell.length_b 36.1 _cell.length_c 137.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CIE _atom_sites.fract_transf_matrix[1][1] 0.027701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 117 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 109 109 HOH HOH . D 4 HOH A 2 110 110 HOH HOH . D 4 HOH A 3 112 112 HOH HOH . D 4 HOH A 4 113 113 HOH HOH . D 4 HOH A 5 118 118 HOH HOH . D 4 HOH A 6 119 119 HOH HOH . D 4 HOH A 7 121 121 HOH HOH . D 4 HOH A 8 122 122 HOH HOH . D 4 HOH A 9 125 125 HOH HOH . D 4 HOH A 10 126 126 HOH HOH . D 4 HOH A 11 128 128 HOH HOH . D 4 HOH A 12 129 129 HOH HOH . D 4 HOH A 13 130 130 HOH HOH . D 4 HOH A 14 133 133 HOH HOH . D 4 HOH A 15 135 135 HOH HOH . D 4 HOH A 16 136 136 HOH HOH . D 4 HOH A 17 137 137 HOH HOH . D 4 HOH A 18 138 138 HOH HOH . D 4 HOH A 19 140 140 HOH HOH . D 4 HOH A 20 142 142 HOH HOH . D 4 HOH A 21 143 143 HOH HOH . D 4 HOH A 22 148 148 HOH HOH . D 4 HOH A 23 149 149 HOH HOH . D 4 HOH A 24 153 153 HOH HOH . D 4 HOH A 25 154 154 HOH HOH . D 4 HOH A 26 158 158 HOH HOH . D 4 HOH A 27 160 160 HOH HOH . D 4 HOH A 28 163 163 HOH HOH . D 4 HOH A 29 167 167 HOH HOH . D 4 HOH A 30 168 168 HOH HOH . D 4 HOH A 31 170 170 HOH HOH . D 4 HOH A 32 172 172 HOH HOH . D 4 HOH A 33 175 175 HOH HOH . D 4 HOH A 34 176 176 HOH HOH . D 4 HOH A 35 177 177 HOH HOH . D 4 HOH A 36 181 181 HOH HOH . D 4 HOH A 37 182 182 HOH HOH . D 4 HOH A 38 183 183 HOH HOH . D 4 HOH A 39 185 185 HOH HOH . D 4 HOH A 40 189 189 HOH HOH . D 4 HOH A 41 191 191 HOH HOH . D 4 HOH A 42 194 194 HOH HOH . D 4 HOH A 43 195 195 HOH HOH . D 4 HOH A 44 196 196 HOH HOH . D 4 HOH A 45 197 197 HOH HOH . D 4 HOH A 46 198 198 HOH HOH . D 4 HOH A 47 200 200 HOH HOH . D 4 HOH A 48 201 201 HOH HOH . D 4 HOH A 49 204 204 HOH HOH . D 4 HOH A 50 208 208 HOH HOH . D 4 HOH A 51 209 209 HOH HOH . D 4 HOH A 52 211 211 HOH HOH . D 4 HOH A 53 214 214 HOH HOH . D 4 HOH A 54 215 215 HOH HOH . D 4 HOH A 55 216 216 HOH HOH . D 4 HOH A 56 219 219 HOH HOH . D 4 HOH A 57 226 226 HOH HOH . D 4 HOH A 58 229 229 HOH HOH . D 4 HOH A 59 231 231 HOH HOH . D 4 HOH A 60 252 252 HOH HOH . D 4 HOH A 61 262 262 HOH HOH . D 4 HOH A 62 272 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.772 20.831 13.054 1 12.32 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 5.159 18.537 14.204 1 12.68 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 4.031 20.589 9.952 1 11.88 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 0.131 22.697 11.917 1 10.06 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 1.952 21.518 16.218 1 12.84 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 4.289 19.799 12.267 1 12.49 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 5.095 18.85 12.832 1 13.53 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.85 18.147 11.794 1 13.63 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.597 18.736 10.646 1 13.34 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.591 19.749 10.875 1 13 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 6.094 18.394 9.216 1 13 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.853 17.018 12.11 1 13.67 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 8.217 17.694 12.433 1 15.04 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.417 16.836 12.562 1 14.39 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.43 17.476 12.935 1 15.25 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.357 15.605 12.384 1 17.3 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 2.151 21.515 11.27 1 9.56 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 2.924 21.363 10.12 1 12.02 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 2.24 22.097 9.062 1 9.91 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 1.172 22.695 9.611 1 9.9 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 1.132 22.334 11.025 1 9.24 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.82 22.169 7.628 1 8.14 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 0.122 23.543 8.936 1 9.89 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -0.844 22.774 8 1 13.68 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 1.303 21.856 13.918 1 11.47 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 0.345 22.654 13.293 1 12.78 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.409 23.407 14.296 1 12.79 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 0.112 23.054 15.478 1 13.18 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 1.17 22.106 15.267 1 12.75 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.548 24.385 14.012 1 12.62 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.258 23.62 16.87 1 12.87 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -1.814 23.748 17.128 1 11.11 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 3.45 20.145 14.893 1 11.54 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 2.892 20.545 16.082 1 11.99 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.493 19.755 17.131 1 12.76 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 4.386 18.947 16.573 1 12.29 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 4.344 19.171 15.115 1 11.66 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 3.106 19.887 18.653 1 12.11 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 5.298 17.879 17.214 1 12.41 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.47 16.579 17.366 1 12.75 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 4.958 15.531 18.309 1 12.89 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 5.992 15.73 18.96 1 15.43 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 4.238 14.499 18.26 1 13.78 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #