data_1CIF # _model_server_result.job_id KCd1B4Y--zpGpjtKMgzmOg _model_server_result.datetime_utc '2024-12-14 23:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1CIF # _exptl.entry_id 1CIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CIF _cell.length_a 36.75 _cell.length_b 36.75 _cell.length_c 137.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CIF _atom_sites.fract_transf_matrix[1][1] 0.027211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 117 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 106 106 HOH HOH . D 4 HOH A 2 109 109 HOH HOH . D 4 HOH A 3 110 110 HOH HOH . D 4 HOH A 4 112 112 HOH HOH . D 4 HOH A 5 113 113 HOH HOH . D 4 HOH A 6 115 115 HOH HOH . D 4 HOH A 7 118 118 HOH HOH . D 4 HOH A 8 119 119 HOH HOH . D 4 HOH A 9 121 121 HOH HOH . D 4 HOH A 10 122 122 HOH HOH . D 4 HOH A 11 125 125 HOH HOH . D 4 HOH A 12 126 126 HOH HOH . D 4 HOH A 13 127 127 HOH HOH . D 4 HOH A 14 133 133 HOH HOH . D 4 HOH A 15 135 135 HOH HOH . D 4 HOH A 16 136 136 HOH HOH . D 4 HOH A 17 138 138 HOH HOH . D 4 HOH A 18 140 140 HOH HOH . D 4 HOH A 19 141 141 HOH HOH . D 4 HOH A 20 142 142 HOH HOH . D 4 HOH A 21 146 146 HOH HOH . D 4 HOH A 22 149 149 HOH HOH . D 4 HOH A 23 150 150 HOH HOH . D 4 HOH A 24 151 151 HOH HOH . D 4 HOH A 25 152 152 HOH HOH . D 4 HOH A 26 154 154 HOH HOH . D 4 HOH A 27 158 158 HOH HOH . D 4 HOH A 28 160 160 HOH HOH . D 4 HOH A 29 163 163 HOH HOH . D 4 HOH A 30 165 165 HOH HOH . D 4 HOH A 31 166 166 HOH HOH . D 4 HOH A 32 167 167 HOH HOH . D 4 HOH A 33 168 168 HOH HOH . D 4 HOH A 34 170 170 HOH HOH . D 4 HOH A 35 173 173 HOH HOH . D 4 HOH A 36 175 175 HOH HOH . D 4 HOH A 37 178 178 HOH HOH . D 4 HOH A 38 180 180 HOH HOH . D 4 HOH A 39 181 181 HOH HOH . D 4 HOH A 40 182 182 HOH HOH . D 4 HOH A 41 183 183 HOH HOH . D 4 HOH A 42 184 184 HOH HOH . D 4 HOH A 43 185 185 HOH HOH . D 4 HOH A 44 188 188 HOH HOH . D 4 HOH A 45 189 189 HOH HOH . D 4 HOH A 46 193 193 HOH HOH . D 4 HOH A 47 196 196 HOH HOH . D 4 HOH A 48 197 197 HOH HOH . D 4 HOH A 49 198 198 HOH HOH . D 4 HOH A 50 200 200 HOH HOH . D 4 HOH A 51 201 201 HOH HOH . D 4 HOH A 52 204 204 HOH HOH . D 4 HOH A 53 205 205 HOH HOH . D 4 HOH A 54 206 206 HOH HOH . D 4 HOH A 55 207 207 HOH HOH . D 4 HOH A 56 209 209 HOH HOH . D 4 HOH A 57 211 211 HOH HOH . D 4 HOH A 58 214 214 HOH HOH . D 4 HOH A 59 216 216 HOH HOH . D 4 HOH A 60 217 217 HOH HOH . D 4 HOH A 61 219 219 HOH HOH . D 4 HOH A 62 221 221 HOH HOH . D 4 HOH A 63 223 223 HOH HOH . D 4 HOH A 64 231 231 HOH HOH . D 4 HOH A 65 236 236 HOH HOH . D 4 HOH A 66 243 243 HOH HOH . D 4 HOH A 67 262 262 HOH HOH . D 4 HOH A 68 263 263 HOH HOH . D 4 HOH A 69 266 266 HOH HOH . D 4 HOH A 70 269 269 HOH HOH . D 4 HOH A 71 273 273 HOH HOH . D 4 HOH A 72 274 274 HOH HOH . D 4 HOH A 73 275 275 HOH HOH . D 4 HOH A 74 276 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.804 21.029 13.208 1 14.34 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 4.913 18.654 14.322 1 12.68 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 4.121 20.857 10.085 1 13.32 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 0.13 22.788 12.01 1 12.75 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 2.05 21.942 16.375 1 11.73 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 4.31 20.035 12.393 1 13.11 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 5.004 18.968 12.978 1 13.7 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.698 18.247 11.946 1 13.6 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.482 18.853 10.764 1 12.96 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.59 19.952 11.01 1 12.67 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 6.029 18.463 9.38 1 11.6 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.637 17.035 12.211 1 12.6 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 8.041 17.627 12.283 1 13.51 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.294 16.889 12.428 1 11.99 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.267 17.703 12.508 1 14.51 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.361 15.622 12.463 1 12.76 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 2.203 21.664 11.387 1 13.34 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 2.967 21.577 10.239 1 13.29 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 2.29 22.317 9.177 1 14.38 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 1.185 22.88 9.718 1 13.29 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 1.111 22.445 11.105 1 13.79 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.854 22.425 7.747 1 12.84 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 0.102 23.703 9.027 1 14.34 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -0.569 22.823 7.916 1 15.78 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 1.332 22.126 14.048 1 12.57 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 0.336 22.831 13.375 1 14.68 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.43 23.61 14.325 1 13.3 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 0.093 23.368 15.55 1 12.64 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 1.194 22.446 15.377 1 13.37 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.602 24.511 13.864 1 13.21 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.31 23.969 16.896 1 10.16 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -1.869 24.128 17.078 1 9.44 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 3.347 20.41 15.049 1 11.98 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 2.99 20.935 16.253 1 11.14 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.694 20.217 17.285 1 13.16 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 4.5 19.323 16.724 1 12.21 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 4.257 19.386 15.284 1 12.97 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 3.556 20.498 18.83 1 10.77 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 5.452 18.261 17.283 1 11.74 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.744 16.911 17.516 1 10.84 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 5.274 15.824 18.332 1 12.38 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 6.428 15.8 18.872 1 10.1 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 4.504 14.763 18.399 1 14.47 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #