data_1CIP # _model_server_result.job_id uZVhuE_MzD57BytLd1QGyA _model_server_result.datetime_utc '2024-11-27 01:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":355}' # _entry.id 1CIP # _exptl.entry_id 1CIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CIP _cell.length_a 80.05 _cell.length_b 80.05 _cell.length_c 105.55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CIP _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 46 A SER 47 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A OG1 THR 180 A THR 181 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 C O2G GNP . A GNP 355 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 C O1B GNP . A GNP 355 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 B MG MG . A MG 356 1_555 D O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 B MG MG . A MG 356 1_555 D O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1CIP _atom_sites.fract_transf_matrix[1][1] 0.012492 _atom_sites.fract_transf_matrix[1][2] 0.007212 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 356 356 MG MG . C 3 GNP A 1 355 355 GNP GNP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 424 424 HOH HOH . D 4 HOH A 24 425 425 HOH HOH . D 4 HOH A 25 426 426 HOH HOH . D 4 HOH A 26 427 427 HOH HOH . D 4 HOH A 27 428 428 HOH HOH . D 4 HOH A 28 429 429 HOH HOH . D 4 HOH A 29 430 430 HOH HOH . D 4 HOH A 30 432 432 HOH HOH . D 4 HOH A 31 433 433 HOH HOH . D 4 HOH A 32 434 434 HOH HOH . D 4 HOH A 33 435 435 HOH HOH . D 4 HOH A 34 436 436 HOH HOH . D 4 HOH A 35 437 437 HOH HOH . D 4 HOH A 36 438 438 HOH HOH . D 4 HOH A 37 439 439 HOH HOH . D 4 HOH A 38 440 440 HOH HOH . D 4 HOH A 39 441 441 HOH HOH . D 4 HOH A 40 442 442 HOH HOH . D 4 HOH A 41 443 443 HOH HOH . D 4 HOH A 42 444 444 HOH HOH . D 4 HOH A 43 446 446 HOH HOH . D 4 HOH A 44 447 447 HOH HOH . D 4 HOH A 45 448 448 HOH HOH . D 4 HOH A 46 449 449 HOH HOH . D 4 HOH A 47 450 450 HOH HOH . D 4 HOH A 48 452 452 HOH HOH . D 4 HOH A 49 454 454 HOH HOH . D 4 HOH A 50 456 456 HOH HOH . D 4 HOH A 51 457 457 HOH HOH . D 4 HOH A 52 458 458 HOH HOH . D 4 HOH A 53 459 459 HOH HOH . D 4 HOH A 54 461 461 HOH HOH . D 4 HOH A 55 462 462 HOH HOH . D 4 HOH A 56 463 463 HOH HOH . D 4 HOH A 57 464 464 HOH HOH . D 4 HOH A 58 465 465 HOH HOH . D 4 HOH A 59 466 466 HOH HOH . D 4 HOH A 60 468 468 HOH HOH . D 4 HOH A 61 469 469 HOH HOH . D 4 HOH A 62 470 470 HOH HOH . D 4 HOH A 63 471 471 HOH HOH . D 4 HOH A 64 472 472 HOH HOH . D 4 HOH A 65 473 473 HOH HOH . D 4 HOH A 66 474 474 HOH HOH . D 4 HOH A 67 475 475 HOH HOH . D 4 HOH A 68 476 476 HOH HOH . D 4 HOH A 69 477 477 HOH HOH . D 4 HOH A 70 478 478 HOH HOH . D 4 HOH A 71 480 480 HOH HOH . D 4 HOH A 72 481 481 HOH HOH . D 4 HOH A 73 483 483 HOH HOH . D 4 HOH A 74 484 484 HOH HOH . D 4 HOH A 75 485 485 HOH HOH . D 4 HOH A 76 486 486 HOH HOH . D 4 HOH A 77 487 487 HOH HOH . D 4 HOH A 78 488 488 HOH HOH . D 4 HOH A 79 489 489 HOH HOH . D 4 HOH A 80 490 490 HOH HOH . D 4 HOH A 81 492 492 HOH HOH . D 4 HOH A 82 493 493 HOH HOH . D 4 HOH A 83 494 494 HOH HOH . D 4 HOH A 84 496 496 HOH HOH . D 4 HOH A 85 497 497 HOH HOH . D 4 HOH A 86 499 499 HOH HOH . D 4 HOH A 87 502 502 HOH HOH . D 4 HOH A 88 503 503 HOH HOH . D 4 HOH A 89 504 504 HOH HOH . D 4 HOH A 90 505 505 HOH HOH . D 4 HOH A 91 508 508 HOH HOH . D 4 HOH A 92 509 509 HOH HOH . D 4 HOH A 93 510 510 HOH HOH . D 4 HOH A 94 511 511 HOH HOH . D 4 HOH A 95 512 512 HOH HOH . D 4 HOH A 96 514 514 HOH HOH . D 4 HOH A 97 515 515 HOH HOH . D 4 HOH A 98 516 516 HOH HOH . D 4 HOH A 99 517 517 HOH HOH . D 4 HOH A 100 518 518 HOH HOH . D 4 HOH A 101 519 519 HOH HOH . D 4 HOH A 102 520 520 HOH HOH . D 4 HOH A 103 521 521 HOH HOH . D 4 HOH A 104 522 522 HOH HOH . D 4 HOH A 105 523 523 HOH HOH . D 4 HOH A 106 525 525 HOH HOH . D 4 HOH A 107 600 600 HOH HOH . D 4 HOH A 108 601 601 HOH HOH . D 4 HOH A 109 602 602 HOH HOH . D 4 HOH A 110 603 603 HOH HOH . D 4 HOH A 111 604 604 HOH HOH . D 4 HOH A 112 605 605 HOH HOH . D 4 HOH A 113 606 606 HOH HOH . D 4 HOH A 114 607 607 HOH HOH . D 4 HOH A 115 608 608 HOH HOH . D 4 HOH A 116 609 609 HOH HOH . D 4 HOH A 117 610 610 HOH HOH . D 4 HOH A 118 611 611 HOH HOH . D 4 HOH A 119 612 612 HOH HOH . D 4 HOH A 120 613 613 HOH HOH . D 4 HOH A 121 701 701 HOH HOH . D 4 HOH A 122 702 702 HOH HOH . D 4 HOH A 123 705 705 HOH HOH . D 4 HOH A 124 706 706 HOH HOH . D 4 HOH A 125 707 707 HOH HOH . D 4 HOH A 126 708 708 HOH HOH . D 4 HOH A 127 709 709 HOH HOH . D 4 HOH A 128 710 710 HOH HOH . D 4 HOH A 129 711 711 HOH HOH . D 4 HOH A 130 712 712 HOH HOH . D 4 HOH A 131 713 713 HOH HOH . D 4 HOH A 132 714 714 HOH HOH . D 4 HOH A 133 715 715 HOH HOH . D 4 HOH A 134 717 717 HOH HOH . D 4 HOH A 135 718 718 HOH HOH . D 4 HOH A 136 719 719 HOH HOH . D 4 HOH A 137 720 720 HOH HOH . D 4 HOH A 138 721 721 HOH HOH . D 4 HOH A 139 722 722 HOH HOH . D 4 HOH A 140 723 723 HOH HOH . D 4 HOH A 141 724 724 HOH HOH . D 4 HOH A 142 725 725 HOH HOH . D 4 HOH A 143 726 726 HOH HOH . D 4 HOH A 144 727 727 HOH HOH . D 4 HOH A 145 728 728 HOH HOH . D 4 HOH A 146 729 729 HOH HOH . D 4 HOH A 147 730 730 HOH HOH . D 4 HOH A 148 731 731 HOH HOH . D 4 HOH A 149 732 732 HOH HOH . D 4 HOH A 150 733 733 HOH HOH . D 4 HOH A 151 734 734 HOH HOH . D 4 HOH A 152 735 735 HOH HOH . D 4 HOH A 153 736 736 HOH HOH . D 4 HOH A 154 737 737 HOH HOH . D 4 HOH A 155 738 738 HOH HOH . D 4 HOH A 156 739 739 HOH HOH . D 4 HOH A 157 740 740 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 36.881 -32.39 12.439 1 10.94 ? PG GNP 355 A 1 HETATM 2 O O1G GNP . . . C 3 38.144 -32.827 13.112 1 11.26 ? O1G GNP 355 A 1 HETATM 3 O O2G GNP . . . C 3 36.014 -31.48 13.199 1 10.66 ? O2G GNP 355 A 1 HETATM 4 O O3G GNP . . . C 3 36.19 -33.562 11.881 1 11.39 ? O3G GNP 355 A 1 HETATM 5 N N3B GNP . . . C 3 37.432 -31.497 11.107 1 9.79 ? N3B GNP 355 A 1 HETATM 6 P PB GNP . . . C 3 36.415 -30.679 10.049 1 9.72 ? PB GNP 355 A 1 HETATM 7 O O1B GNP . . . C 3 35.392 -29.884 10.739 1 8.45 ? O1B GNP 355 A 1 HETATM 8 O O2B GNP . . . C 3 35.919 -31.636 9.017 1 10.02 ? O2B GNP 355 A 1 HETATM 9 O O3A GNP . . . C 3 37.404 -29.591 9.315 1 9.19 ? O3A GNP 355 A 1 HETATM 10 P PA GNP . . . C 3 37.362 -28.023 9.456 1 11.15 ? PA GNP 355 A 1 HETATM 11 O O1A GNP . . . C 3 36.11 -27.44 8.952 1 10.42 ? O1A GNP 355 A 1 HETATM 12 O O2A GNP . . . C 3 37.83 -27.678 10.837 1 14.31 ? O2A GNP 355 A 1 HETATM 13 O O5' GNP . . . C 3 38.538 -27.637 8.485 1 10.03 ? O5' GNP 355 A 1 HETATM 14 C C5' GNP . . . C 3 39.939 -27.917 8.786 1 9.68 ? C5' GNP 355 A 1 HETATM 15 C C4' GNP . . . C 3 40.862 -26.829 8.23 1 10.2 ? C4' GNP 355 A 1 HETATM 16 O O4' GNP . . . C 3 40.761 -26.839 6.742 1 8.55 ? O4' GNP 355 A 1 HETATM 17 C C3' GNP . . . C 3 40.462 -25.426 8.714 1 8.04 ? C3' GNP 355 A 1 HETATM 18 O O3' GNP . . . C 3 41.689 -24.689 8.913 1 9.28 ? O3' GNP 355 A 1 HETATM 19 C C2' GNP . . . C 3 39.649 -24.824 7.495 1 9.32 ? C2' GNP 355 A 1 HETATM 20 O O2' GNP . . . C 3 39.813 -23.407 7.401 1 9.45 ? O2' GNP 355 A 1 HETATM 21 C C1' GNP . . . C 3 40.404 -25.514 6.326 1 7.6 ? C1' GNP 355 A 1 HETATM 22 N N9 GNP . . . C 3 39.518 -25.645 5.163 1 8.23 ? N9 GNP 355 A 1 HETATM 23 C C8 GNP . . . C 3 38.273 -26.232 5.045 1 9.74 ? C8 GNP 355 A 1 HETATM 24 N N7 GNP . . . C 3 37.784 -26.343 3.834 1 9.68 ? N7 GNP 355 A 1 HETATM 25 C C5 GNP . . . C 3 38.779 -25.698 3.074 1 9.82 ? C5 GNP 355 A 1 HETATM 26 C C6 GNP . . . C 3 38.866 -25.516 1.625 1 10.78 ? C6 GNP 355 A 1 HETATM 27 O O6 GNP . . . C 3 38.033 -25.866 0.785 1 10.01 ? O6 GNP 355 A 1 HETATM 28 N N1 GNP . . . C 3 40.06 -24.873 1.262 1 9.84 ? N1 GNP 355 A 1 HETATM 29 C C2 GNP . . . C 3 41.078 -24.458 2.11 1 10.61 ? C2 GNP 355 A 1 HETATM 30 N N2 GNP . . . C 3 42.151 -23.868 1.598 1 9.42 ? N2 GNP 355 A 1 HETATM 31 N N3 GNP . . . C 3 41.048 -24.72 3.441 1 10.12 ? N3 GNP 355 A 1 HETATM 32 C C4 GNP . . . C 3 39.873 -25.32 3.852 1 10.37 ? C4 GNP 355 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #