data_1CJA
#
_model_server_result.job_id            7wTnxMyfZDD0dO_3ORnRWQ 
_model_server_result.datetime_utc      '2025-02-27 21:14:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":525}' 
#
_entry.id    1CJA 
#
_exptl.entry_id    1CJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1CJA 
_cell.length_a            178.9 
_cell.length_b            178.9 
_cell.length_c            59.3 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CJA 
_symmetry.cell_setting             trigonal 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     1CJA 
_atom_sites.fract_transf_matrix[1][1]    0.00559 
_atom_sites.fract_transf_matrix[1][2]    0.003227 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 425 425 AMP AMP . 
D 2 AMP B 1 525 525 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 2 53.886 40.255 18.617 1 76.31 ? P AMP 525 B 1 
HETATM 2 O O1P AMP . . . D 2 52.809 41.039 19.259 1 80.74 ? O1P AMP 525 B 1 
HETATM 3 O O2P AMP . . . D 2 53.51 39.09 17.792 1 75.42 ? O2P AMP 525 B 1 
HETATM 4 O O3P AMP . . . D 2 54.992 39.555 19.527 1 78.98 ? O3P AMP 525 B 1 
HETATM 5 O O5' AMP . . . D 2 54.728 41.219 17.787 1 74.86 ? O5' AMP 525 B 1 
HETATM 6 C C5' AMP . . . D 2 55.328 42.514 18.35 1 63.39 ? C5' AMP 525 B 1 
HETATM 7 C C4' AMP . . . D 2 55.226 43.674 17.352 1 59.37 ? C4' AMP 525 B 1 
HETATM 8 O O4' AMP . . . D 2 55.668 43.172 16.053 1 53.65 ? O4' AMP 525 B 1 
HETATM 9 C C3' AMP . . . D 2 53.739 44.179 17.105 1 58.24 ? C3' AMP 525 B 1 
HETATM 10 O O3' AMP . . . D 2 53.278 45.286 17.879 1 64.11 ? O3' AMP 525 B 1 
HETATM 11 C C2' AMP . . . D 2 53.786 44.62 15.711 1 53.91 ? C2' AMP 525 B 1 
HETATM 12 O O2' AMP . . . D 2 54.609 45.763 15.472 1 54.87 ? O2' AMP 525 B 1 
HETATM 13 C C1' AMP . . . D 2 54.525 43.398 15.269 1 49.86 ? C1' AMP 525 B 1 
HETATM 14 N N9 AMP . . . D 2 54.064 42.544 14.243 1 42.27 ? N9 AMP 525 B 1 
HETATM 15 C C8 AMP . . . D 2 53.473 41.317 14.356 1 39.07 ? C8 AMP 525 B 1 
HETATM 16 N N7 AMP . . . D 2 53.13 40.842 13.201 1 37.78 ? N7 AMP 525 B 1 
HETATM 17 C C5 AMP . . . D 2 53.507 41.792 12.263 1 35.89 ? C5 AMP 525 B 1 
HETATM 18 C C6 AMP . . . D 2 53.415 41.876 10.877 1 38.25 ? C6 AMP 525 B 1 
HETATM 19 N N6 AMP . . . D 2 52.86 40.899 10.115 1 39.83 ? N6 AMP 525 B 1 
HETATM 20 N N1 AMP . . . D 2 53.917 43.004 10.319 1 41.13 ? N1 AMP 525 B 1 
HETATM 21 C C2 AMP . . . D 2 54.459 43.96 11.075 1 41.45 ? C2 AMP 525 B 1 
HETATM 22 N N3 AMP . . . D 2 54.607 44.007 12.4 1 36.08 ? N3 AMP 525 B 1 
HETATM 23 C C4 AMP . . . D 2 54.105 42.876 12.958 1 37.91 ? C4 AMP 525 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#