data_1CJK # _model_server_result.job_id bD87aqQF5dKk9JS1IZ0c-g _model_server_result.datetime_utc '2024-11-24 03:49:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 1CJK # _exptl.entry_id 1CJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CJK _cell.length_a 118.9 _cell.length_b 134.9 _cell.length_c 72.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CJK _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L O HOH . A HOH 53 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc2 A OD1 ASP 33 A ASP 396 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 A OD2 ASP 33 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 A O ILE 34 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 A OD1 ASP 77 A ASP 440 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 A OD2 ASP 77 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 D MG MG . A MG 581 1_555 G O5' TAT . A TAT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 E MN MN . A MN 582 1_555 G O2B TAT . A TAT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 E MN MN . A MN 582 1_555 G O1A TAT . A TAT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc10 C OG SER 54 C SER 54 1_555 I MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc11 C OG1 THR 204 C THR 204 1_555 I MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc12 I MG MG . C MG 403 1_555 K O2G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? metalc ? metalc13 I MG MG . C MG 403 1_555 K O2B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc14 I MG MG . C MG 403 1_555 N O HOH . C HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc15 I MG MG . C MG 403 1_555 N O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id TAT _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 TAT doub 430 n y C2 N3 TAT sing 431 n y N1 C6 TAT sing 432 n y N3 C4 TAT doub 433 n y O2' C2' TAT sing 434 n n O3' C3' TAT sing 435 n n C6 N6 TAT sing 436 n n C6 C5 TAT doub 437 n y C4 C5 TAT sing 438 n y C4 N9 TAT sing 439 n y C5 N7 TAT sing 440 n y C1' N9 TAT sing 441 n n C1' C2' TAT sing 442 n n C1' O4' TAT sing 443 n n N9 C8 TAT sing 444 n y C2' C3' TAT sing 445 n n N7 C8 TAT doub 446 n y C3' C4' TAT sing 447 n n O4' C4' TAT sing 448 n n C4' C5' TAT sing 449 n n O2A PA TAT doub 450 n n C5' O5' TAT sing 451 n n O5' PA TAT sing 452 n n PA O3A TAT sing 453 n n PA S1G TAT sing 454 n n O3A PB TAT sing 455 n n O1B PB TAT doub 456 n n PB O3B TAT sing 457 n n PB O2B TAT sing 458 n n O3B PG TAT sing 459 n n O2G PG TAT doub 460 n n O1A PG TAT sing 461 n n PG O3G TAT sing 462 n n C2 H1 TAT sing 463 n n N6 H2 TAT sing 464 n n N6 H3 TAT sing 465 n n C8 H4 TAT sing 466 n n C1' H5 TAT sing 467 n n O1A H6 TAT sing 468 n n S1G H7 TAT sing 469 n n C2' H8 TAT sing 470 n n O2' H9 TAT sing 471 n n O2B H10 TAT sing 472 n n C3' H11 TAT sing 473 n n O3' H12 TAT sing 474 n n O3G H13 TAT sing 475 n n C4' H14 TAT sing 476 n n C5' H15 TAT sing 477 n n C5' H16 TAT sing 478 n n # _atom_sites.entry_id 1CJK _atom_sites.fract_transf_matrix[1][1] 0.00841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 581 502 MG MG . E 5 MN A 1 582 503 MN MN . F 6 FOK A 1 701 701 FOK FOK . G 7 TAT A 1 801 801 TAT AGS . H 8 MES A 1 901 901 MES MES . I 4 MG C 1 403 396 MG MG . J 9 CL C 1 404 397 CL CL . K 10 GSP C 1 405 395 GSP GSP . L 11 HOH A 1 11 11 HOH HOH . L 11 HOH A 2 24 24 HOH HOH . L 11 HOH A 3 25 25 HOH HOH . L 11 HOH A 4 27 27 HOH HOH . L 11 HOH A 5 30 30 HOH HOH . L 11 HOH A 6 31 31 HOH HOH . L 11 HOH A 7 33 33 HOH HOH . L 11 HOH A 8 53 53 HOH HOH . M 11 HOH B 1 8 8 HOH HOH . M 11 HOH B 2 9 9 HOH HOH . M 11 HOH B 3 13 13 HOH HOH . M 11 HOH B 4 14 14 HOH HOH . M 11 HOH B 5 15 15 HOH HOH . M 11 HOH B 6 16 16 HOH HOH . M 11 HOH B 7 17 17 HOH HOH . M 11 HOH B 8 18 18 HOH HOH . M 11 HOH B 9 19 19 HOH HOH . M 11 HOH B 10 22 22 HOH HOH . M 11 HOH B 11 26 26 HOH HOH . M 11 HOH B 12 36 36 HOH HOH . N 11 HOH C 1 406 2 HOH HOH . N 11 HOH C 2 407 3 HOH HOH . N 11 HOH C 3 408 7 HOH HOH . N 11 HOH C 4 409 10 HOH HOH . N 11 HOH C 5 410 34 HOH HOH . N 11 HOH C 6 411 39 HOH HOH . N 11 HOH C 7 412 40 HOH HOH . N 11 HOH C 8 413 41 HOH HOH . N 11 HOH C 9 414 43 HOH HOH . N 11 HOH C 10 415 44 HOH HOH . N 11 HOH C 11 416 45 HOH HOH . N 11 HOH C 12 417 49 HOH HOH . N 11 HOH C 13 418 51 HOH HOH . N 11 HOH C 14 419 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TAT . . . G 7 54.787 -18.361 52.05 1 32.97 ? N1 TAT 801 A 1 HETATM 2 C C2 TAT . . . G 7 54.421 -17.09 51.977 1 31.18 ? C2 TAT 801 A 1 HETATM 3 N N3 TAT . . . G 7 55.084 -16.009 52.337 1 34.63 ? N3 TAT 801 A 1 HETATM 4 C C4 TAT . . . G 7 56.286 -16.326 52.849 1 37.39 ? C4 TAT 801 A 1 HETATM 5 C C5 TAT . . . G 7 56.797 -17.596 52.991 1 36.62 ? C5 TAT 801 A 1 HETATM 6 C C6 TAT . . . G 7 56 -18.651 52.552 1 34.82 ? C6 TAT 801 A 1 HETATM 7 N N6 TAT . . . G 7 56.384 -19.921 52.596 1 36.27 ? N6 TAT 801 A 1 HETATM 8 N N7 TAT . . . G 7 58.062 -17.561 53.558 1 38.84 ? N7 TAT 801 A 1 HETATM 9 C C8 TAT . . . G 7 58.293 -16.287 53.736 1 40.66 ? C8 TAT 801 A 1 HETATM 10 N N9 TAT . . . G 7 57.278 -15.471 53.294 1 42.16 ? N9 TAT 801 A 1 HETATM 11 P PA TAT . . . G 7 57.18 -9.112 56.336 1 39.4 ? PA TAT 801 A 1 HETATM 12 P PB TAT . . . G 7 58.824 -8.307 58.413 1 41.19 ? PB TAT 801 A 1 HETATM 13 P PG TAT . . . G 7 57.153 -6.625 59.67 1 44.18 ? PG TAT 801 A 1 HETATM 14 C C1' TAT . . . G 7 57.286 -14 53.224 1 46.15 ? C1' TAT 801 A 1 HETATM 15 O O1A TAT . . . G 7 55.853 -7.34 59.604 1 41.07 ? O1A TAT 801 A 1 HETATM 16 O O1B TAT . . . G 7 60.229 -7.887 58.234 1 39.34 ? O1B TAT 801 A 1 HETATM 17 S S1G TAT . . . G 7 55.536 -8.906 57.172 1 43.18 ? S1G TAT 801 A 1 HETATM 18 C C2' TAT . . . G 7 55.973 -13.293 53.468 1 49.96 ? C2' TAT 801 A 1 HETATM 19 O O2' TAT . . . G 7 55.144 -13.496 52.342 1 55.93 ? O2' TAT 801 A 1 HETATM 20 O O2A TAT . . . G 7 57.479 -8.567 54.995 1 39.94 ? O2A TAT 801 A 1 HETATM 21 O O2B TAT . . . G 7 58.475 -9.173 59.576 1 41.64 ? O2B TAT 801 A 1 HETATM 22 O O2G TAT . . . G 7 56.905 -5.173 59.462 1 41.85 ? O2G TAT 801 A 1 HETATM 23 C C3' TAT . . . G 7 56.476 -11.858 53.642 1 51.39 ? C3' TAT 801 A 1 HETATM 24 O O3' TAT . . . G 7 56.876 -11.272 52.402 1 53.78 ? O3' TAT 801 A 1 HETATM 25 O O3A TAT . . . G 7 58.413 -9.034 57.165 1 41.87 ? O3A TAT 801 A 1 HETATM 26 O O3B TAT . . . G 7 57.986 -7.074 58.508 1 42.52 ? O3B TAT 801 A 1 HETATM 27 O O3G TAT . . . G 7 57.974 -6.748 60.891 1 47.56 ? O3G TAT 801 A 1 HETATM 28 C C4' TAT . . . G 7 57.748 -12.045 54.452 1 49.49 ? C4' TAT 801 A 1 HETATM 29 O O4' TAT . . . G 7 58.16 -13.431 54.19 1 49.78 ? O4' TAT 801 A 1 HETATM 30 C C5' TAT . . . G 7 57.686 -11.731 55.946 1 46.02 ? C5' TAT 801 A 1 HETATM 31 O O5' TAT . . . G 7 56.764 -10.648 56.206 1 42.39 ? O5' TAT 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #