data_1CJT # _model_server_result.job_id 8SJrcV4W45iMr1xzSapXoQ _model_server_result.datetime_utc '2024-11-23 12:00:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":405}' # _entry.id 1CJT # _exptl.entry_id 1CJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CJT _cell.length_a 118.2 _cell.length_b 134.2 _cell.length_c 71.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CJT _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L O HOH . A HOH 57 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc2 G O2A DAD . A DAD 102 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 G O2G DAD . A DAD 102 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 G O1B DAD . A DAD 102 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 G O2A DAD . A DAD 102 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 A OD1 ASP 33 A ASP 396 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 A OD2 ASP 33 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc8 A O ILE 34 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A OD1 ASP 77 A ASP 440 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc10 A OD2 ASP 77 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 C OG SER 54 C SER 54 1_555 I MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 C OG1 THR 204 C THR 204 1_555 I MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc13 I MG MG . C MG 403 1_555 K O2B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc14 I MG MG . C MG 403 1_555 K O2G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc15 I MG MG . C MG 403 1_555 K O3B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc16 I MG MG . C MG 403 1_555 N O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc17 I MG MG . C MG 403 1_555 N O HOH . C HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CJT _atom_sites.fract_transf_matrix[1][1] 0.00846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 581 502 MG MG . E 5 MN A 1 582 503 MN MN . F 6 FOK A 1 101 101 FOK FOK . G 7 DAD A 1 102 102 DAD DAD . H 8 MES A 1 103 103 MES MES . I 4 MG C 1 403 396 MG MG . J 9 CL C 1 404 397 CL CL . K 10 GSP C 1 405 395 GSP GSP . L 11 HOH A 1 17 17 HOH HOH . L 11 HOH A 2 19 19 HOH HOH . L 11 HOH A 3 21 21 HOH HOH . L 11 HOH A 4 23 23 HOH HOH . L 11 HOH A 5 24 24 HOH HOH . L 11 HOH A 6 27 27 HOH HOH . L 11 HOH A 7 30 30 HOH HOH . L 11 HOH A 8 31 31 HOH HOH . L 11 HOH A 9 57 57 HOH HOH . L 11 HOH A 10 59 59 HOH HOH . L 11 HOH A 11 61 61 HOH HOH . L 11 HOH A 12 62 62 HOH HOH . L 11 HOH A 13 63 63 HOH HOH . L 11 HOH A 14 64 64 HOH HOH . L 11 HOH A 15 65 65 HOH HOH . M 11 HOH B 1 8 8 HOH HOH . M 11 HOH B 2 12 12 HOH HOH . M 11 HOH B 3 13 13 HOH HOH . M 11 HOH B 4 14 14 HOH HOH . M 11 HOH B 5 15 15 HOH HOH . M 11 HOH B 6 16 16 HOH HOH . M 11 HOH B 7 18 18 HOH HOH . M 11 HOH B 8 25 25 HOH HOH . M 11 HOH B 9 26 26 HOH HOH . M 11 HOH B 10 28 28 HOH HOH . M 11 HOH B 11 32 32 HOH HOH . M 11 HOH B 12 34 34 HOH HOH . M 11 HOH B 13 35 35 HOH HOH . M 11 HOH B 14 36 36 HOH HOH . M 11 HOH B 15 37 37 HOH HOH . M 11 HOH B 16 38 38 HOH HOH . M 11 HOH B 17 54 54 HOH HOH . M 11 HOH B 18 56 56 HOH HOH . M 11 HOH B 19 60 60 HOH HOH . M 11 HOH B 20 66 66 HOH HOH . M 11 HOH B 21 67 67 HOH HOH . M 11 HOH B 22 68 68 HOH HOH . M 11 HOH B 23 69 69 HOH HOH . M 11 HOH B 24 70 70 HOH HOH . M 11 HOH B 25 71 71 HOH HOH . N 11 HOH C 1 406 1 HOH HOH . N 11 HOH C 2 407 2 HOH HOH . N 11 HOH C 3 408 3 HOH HOH . N 11 HOH C 4 409 4 HOH HOH . N 11 HOH C 5 410 5 HOH HOH . N 11 HOH C 6 411 7 HOH HOH . N 11 HOH C 7 412 10 HOH HOH . N 11 HOH C 8 413 29 HOH HOH . N 11 HOH C 9 414 39 HOH HOH . N 11 HOH C 10 415 40 HOH HOH . N 11 HOH C 11 416 41 HOH HOH . N 11 HOH C 12 417 42 HOH HOH . N 11 HOH C 13 418 43 HOH HOH . N 11 HOH C 14 419 44 HOH HOH . N 11 HOH C 15 420 45 HOH HOH . N 11 HOH C 16 421 46 HOH HOH . N 11 HOH C 17 422 47 HOH HOH . N 11 HOH C 18 423 49 HOH HOH . N 11 HOH C 19 424 50 HOH HOH . N 11 HOH C 20 425 51 HOH HOH . N 11 HOH C 21 426 52 HOH HOH . N 11 HOH C 22 427 53 HOH HOH . N 11 HOH C 23 428 72 HOH HOH . N 11 HOH C 24 429 73 HOH HOH . N 11 HOH C 25 430 74 HOH HOH . N 11 HOH C 26 431 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . K 10 23.605 3.019 29.03 1 30.46 ? PG GSP 405 C 1 HETATM 2 O O3B GSP . . . K 10 22.483 3.212 28.037 1 23.27 ? O3B GSP 405 C 1 HETATM 3 S S1G GSP . . . K 10 24.885 4.394 28.875 1 36.23 ? S1G GSP 405 C 1 HETATM 4 O O2G GSP . . . K 10 23.037 3.089 30.407 1 26.97 ? O2G GSP 405 C 1 HETATM 5 O O3G GSP . . . K 10 24.378 1.814 28.632 1 28.19 ? O3G GSP 405 C 1 HETATM 6 P PB GSP . . . K 10 21.149 2.564 27.8 1 22.07 ? PB GSP 405 C 1 HETATM 7 O O1B GSP . . . K 10 21.335 1.41 26.887 1 19.18 ? O1B GSP 405 C 1 HETATM 8 O O2B GSP . . . K 10 20.505 2.336 29.117 1 23.23 ? O2B GSP 405 C 1 HETATM 9 P PA GSP . . . K 10 19.121 4.374 27.42 1 28.75 ? PA GSP 405 C 1 HETATM 10 O O1A GSP . . . K 10 18.081 3.387 27.813 1 28.54 ? O1A GSP 405 C 1 HETATM 11 O O2A GSP . . . K 10 19.484 5.469 28.356 1 24.13 ? O2A GSP 405 C 1 HETATM 12 O O3A GSP . . . K 10 20.373 3.622 27.064 1 25.14 ? O3A GSP 405 C 1 HETATM 13 O O5' GSP . . . K 10 18.654 5.049 26.053 1 26.07 ? O5' GSP 405 C 1 HETATM 14 C C5' GSP . . . K 10 19.309 6.212 25.558 1 26.26 ? C5' GSP 405 C 1 HETATM 15 C C4' GSP . . . K 10 18.308 7.222 25.044 1 28.14 ? C4' GSP 405 C 1 HETATM 16 O O4' GSP . . . K 10 17.662 6.742 23.838 1 29.79 ? O4' GSP 405 C 1 HETATM 17 C C3' GSP . . . K 10 17.184 7.621 26 1 28.68 ? C3' GSP 405 C 1 HETATM 18 O O3' GSP . . . K 10 16.979 9.032 25.908 1 34.11 ? O3' GSP 405 C 1 HETATM 19 C C2' GSP . . . K 10 15.975 6.89 25.444 1 29.65 ? C2' GSP 405 C 1 HETATM 20 O O2' GSP . . . K 10 14.744 7.535 25.696 1 28.02 ? O2' GSP 405 C 1 HETATM 21 C C1' GSP . . . K 10 16.253 6.875 23.953 1 28.17 ? C1' GSP 405 C 1 HETATM 22 N N9 GSP . . . K 10 15.639 5.747 23.267 1 26.82 ? N9 GSP 405 C 1 HETATM 23 C C8 GSP . . . K 10 15.685 4.431 23.648 1 25.1 ? C8 GSP 405 C 1 HETATM 24 N N7 GSP . . . K 10 15.048 3.634 22.837 1 24.51 ? N7 GSP 405 C 1 HETATM 25 C C5 GSP . . . K 10 14.555 4.478 21.855 1 24.65 ? C5 GSP 405 C 1 HETATM 26 C C6 GSP . . . K 10 13.799 4.179 20.695 1 23.81 ? C6 GSP 405 C 1 HETATM 27 O O6 GSP . . . K 10 13.428 3.08 20.281 1 29.33 ? O6 GSP 405 C 1 HETATM 28 N N1 GSP . . . K 10 13.49 5.324 19.982 1 21.81 ? N1 GSP 405 C 1 HETATM 29 C C2 GSP . . . K 10 13.859 6.594 20.333 1 26.38 ? C2 GSP 405 C 1 HETATM 30 N N2 GSP . . . K 10 13.423 7.572 19.531 1 28.64 ? N2 GSP 405 C 1 HETATM 31 N N3 GSP . . . K 10 14.593 6.887 21.398 1 26.85 ? N3 GSP 405 C 1 HETATM 32 C C4 GSP . . . K 10 14.897 5.783 22.107 1 25.83 ? C4 GSP 405 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #