data_1CJU # _model_server_result.job_id S0IW-365HkKJ1FPq4rJ6OQ _model_server_result.datetime_utc '2024-10-26 16:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":405}' # _entry.id 1CJU # _exptl.entry_id 1CJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CJU _cell.length_a 118.3 _cell.length_b 134.2 _cell.length_c 71.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CJU _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K O HOH . A HOH 57 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 G O2A DAD . A DAD 102 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 G O2G DAD . A DAD 102 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 G O1B DAD . A DAD 102 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 G O2A DAD . A DAD 102 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 A OD1 ASP 33 A ASP 396 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD2 ASP 33 A ASP 396 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 A O ILE 34 A ILE 397 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc9 A OD1 ASP 77 A ASP 440 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc10 A OD2 ASP 77 A ASP 440 1_555 E MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc11 C OG SER 54 C SER 54 1_555 H MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 C OG1 THR 204 C THR 204 1_555 H MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc13 H MG MG . C MG 403 1_555 J O3B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc14 H MG MG . C MG 403 1_555 J O2G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? metalc ? metalc15 H MG MG . C MG 403 1_555 J O2B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc16 H MG MG . C MG 403 1_555 M O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc17 H MG MG . C MG 403 1_555 M O HOH . C HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CJU _atom_sites.fract_transf_matrix[1][1] 0.008453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 581 502 MG MG . E 4 MG A 1 582 503 MG MG . F 5 FOK A 1 101 101 FOK FOK . G 6 DAD A 1 102 102 DAD DAD . H 4 MG C 1 403 396 MG MG . I 7 CL C 1 404 397 CL CL . J 8 GSP C 1 405 395 GSP GSP . K 9 HOH A 1 21 21 HOH HOH . K 9 HOH A 2 23 23 HOH HOH . K 9 HOH A 3 24 24 HOH HOH . K 9 HOH A 4 30 30 HOH HOH . K 9 HOH A 5 31 31 HOH HOH . K 9 HOH A 6 57 57 HOH HOH . K 9 HOH A 7 58 58 HOH HOH . L 9 HOH B 1 8 8 HOH HOH . L 9 HOH B 2 13 13 HOH HOH . L 9 HOH B 3 14 14 HOH HOH . L 9 HOH B 4 15 15 HOH HOH . L 9 HOH B 5 17 17 HOH HOH . L 9 HOH B 6 18 18 HOH HOH . L 9 HOH B 7 19 19 HOH HOH . L 9 HOH B 8 22 22 HOH HOH . L 9 HOH B 9 26 26 HOH HOH . L 9 HOH B 10 28 28 HOH HOH . L 9 HOH B 11 32 32 HOH HOH . L 9 HOH B 12 37 37 HOH HOH . L 9 HOH B 13 38 38 HOH HOH . M 9 HOH C 1 406 1 HOH HOH . M 9 HOH C 2 407 2 HOH HOH . M 9 HOH C 3 408 3 HOH HOH . M 9 HOH C 4 409 4 HOH HOH . M 9 HOH C 5 410 5 HOH HOH . M 9 HOH C 6 411 7 HOH HOH . M 9 HOH C 7 412 10 HOH HOH . M 9 HOH C 8 413 29 HOH HOH . M 9 HOH C 9 414 39 HOH HOH . M 9 HOH C 10 415 40 HOH HOH . M 9 HOH C 11 416 41 HOH HOH . M 9 HOH C 12 417 42 HOH HOH . M 9 HOH C 13 418 43 HOH HOH . M 9 HOH C 14 419 44 HOH HOH . M 9 HOH C 15 420 45 HOH HOH . M 9 HOH C 16 421 46 HOH HOH . M 9 HOH C 17 422 47 HOH HOH . M 9 HOH C 18 423 48 HOH HOH . M 9 HOH C 19 424 49 HOH HOH . M 9 HOH C 20 425 51 HOH HOH . M 9 HOH C 21 426 52 HOH HOH . M 9 HOH C 22 427 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . J 8 23.418 3.013 29.158 1 31.24 ? PG GSP 405 C 1 HETATM 2 O O3B GSP . . . J 8 22.409 3.326 28.092 1 28.8 ? O3B GSP 405 C 1 HETATM 3 S S1G GSP . . . J 8 24.985 4.058 28.999 1 31.68 ? S1G GSP 405 C 1 HETATM 4 O O2G GSP . . . J 8 22.803 3.314 30.476 1 29.6 ? O2G GSP 405 C 1 HETATM 5 O O3G GSP . . . J 8 23.962 1.65 28.903 1 29.85 ? O3G GSP 405 C 1 HETATM 6 P PB GSP . . . J 8 21.077 2.748 27.732 1 26.41 ? PB GSP 405 C 1 HETATM 7 O O1B GSP . . . J 8 21.296 1.656 26.756 1 24.97 ? O1B GSP 405 C 1 HETATM 8 O O2B GSP . . . J 8 20.334 2.466 28.984 1 27.01 ? O2B GSP 405 C 1 HETATM 9 P PA GSP . . . J 8 19.069 4.436 27.375 1 28.36 ? PA GSP 405 C 1 HETATM 10 O O1A GSP . . . J 8 18.133 3.297 27.56 1 27.51 ? O1A GSP 405 C 1 HETATM 11 O O2A GSP . . . J 8 19.233 5.441 28.454 1 26.93 ? O2A GSP 405 C 1 HETATM 12 O O3A GSP . . . J 8 20.409 3.886 27.034 1 26.54 ? O3A GSP 405 C 1 HETATM 13 O O5' GSP . . . J 8 18.611 5.21 26.061 1 27.11 ? O5' GSP 405 C 1 HETATM 14 C C5' GSP . . . J 8 19.258 6.406 25.656 1 23.17 ? C5' GSP 405 C 1 HETATM 15 C C4' GSP . . . J 8 18.26 7.372 25.071 1 22.03 ? C4' GSP 405 C 1 HETATM 16 O O4' GSP . . . J 8 17.684 6.838 23.848 1 18.84 ? O4' GSP 405 C 1 HETATM 17 C C3' GSP . . . J 8 17.081 7.715 25.981 1 21.59 ? C3' GSP 405 C 1 HETATM 18 O O3' GSP . . . J 8 16.81 9.117 25.889 1 25.47 ? O3' GSP 405 C 1 HETATM 19 C C2' GSP . . . J 8 15.932 6.951 25.36 1 20.77 ? C2' GSP 405 C 1 HETATM 20 O O2' GSP . . . J 8 14.681 7.57 25.552 1 20.58 ? O2' GSP 405 C 1 HETATM 21 C C1' GSP . . . J 8 16.281 6.963 23.889 1 18.83 ? C1' GSP 405 C 1 HETATM 22 N N9 GSP . . . J 8 15.71 5.819 23.198 1 19.64 ? N9 GSP 405 C 1 HETATM 23 C C8 GSP . . . J 8 15.815 4.5 23.565 1 18.1 ? C8 GSP 405 C 1 HETATM 24 N N7 GSP . . . J 8 15.164 3.694 22.773 1 16.77 ? N7 GSP 405 C 1 HETATM 25 C C5 GSP . . . J 8 14.613 4.528 21.82 1 18.85 ? C5 GSP 405 C 1 HETATM 26 C C6 GSP . . . J 8 13.814 4.224 20.694 1 19.35 ? C6 GSP 405 C 1 HETATM 27 O O6 GSP . . . J 8 13.446 3.112 20.298 1 21.61 ? O6 GSP 405 C 1 HETATM 28 N N1 GSP . . . J 8 13.448 5.366 19.997 1 18.64 ? N1 GSP 405 C 1 HETATM 29 C C2 GSP . . . J 8 13.811 6.644 20.336 1 20.64 ? C2 GSP 405 C 1 HETATM 30 N N2 GSP . . . J 8 13.331 7.629 19.552 1 20.96 ? N2 GSP 405 C 1 HETATM 31 N N3 GSP . . . J 8 14.585 6.943 21.373 1 19.69 ? N3 GSP 405 C 1 HETATM 32 C C4 GSP . . . J 8 14.936 5.846 22.061 1 18.51 ? C4 GSP 405 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #