data_1CK7 # _model_server_result.job_id TH-dehL7JxF_rPj7yC5AOg _model_server_result.datetime_utc '2024-11-26 11:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ck7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":996}' # _entry.id 1CK7 # _exptl.entry_id 1CK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CK7 _cell.length_a 121.32 _cell.length_b 121.32 _cell.length_c 345.11 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 60 1_555 A SG CYS 36 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? disulf ? disulf2 A SG CYS 262 A CYS 291 1_555 A SG CYS 288 A CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? disulf ? disulf3 A SG CYS 276 A CYS 305 1_555 A SG CYS 303 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? disulf ? disulf4 A SG CYS 320 A CYS 349 1_555 A SG CYS 346 A CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? disulf ? disulf5 A SG CYS 334 A CYS 363 1_555 A SG CYS 361 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? disulf ? disulf6 A SG CYS 440 A CYS 469 1_555 A SG CYS 631 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc1 A SG CYS 73 A CYS 102 1_555 B ZN ZN . A ZN 990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 A OE1 GLU 137 A GLU 166 1_555 E CA CA . A CA 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.219 ? metalc ? metalc3 A O ALA 138 A ALA 167 1_555 E CA CA . A CA 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc4 A O ASP 139 A ASP 168 1_555 E CA CA . A CA 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc5 A NE2 HIS 149 A HIS 178 1_555 C ZN ZN . A ZN 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A OD2 ASP 151 A ASP 180 1_555 C ZN ZN . A ZN 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc7 A O ASP 156 A ASP 185 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc8 A O GLY 157 A GLY 186 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc9 A O ASP 159 A ASP 188 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc10 A O LEU 161 A LEU 190 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc11 A NE2 HIS 164 A HIS 193 1_555 C ZN ZN . A ZN 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc12 A O GLY 171 A GLY 200 1_555 E CA CA . A CA 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc13 A ND1 HIS 177 A HIS 206 1_555 C ZN ZN . A ZN 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc14 A OD2 ASP 179 A ASP 208 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc15 A OE2 GLU 182 A GLU 211 1_555 D CA CA . A CA 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc16 A NE2 HIS 374 A HIS 403 1_555 B ZN ZN . A ZN 990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc17 A NE2 HIS 378 A HIS 407 1_555 B ZN ZN . A ZN 990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc18 A NE2 HIS 384 A HIS 413 1_555 B ZN ZN . A ZN 990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc19 A O ASP 447 A ASP 476 1_555 F CA CA . A CA 994 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc20 A O ILE 449 A ILE 478 1_555 H NA NA . A NA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc21 A O ASP 492 A ASP 521 1_555 F CA CA . A CA 994 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc22 A O VAL 494 A VAL 523 1_555 H NA NA . A NA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc23 A O ASP 540 A ASP 569 1_555 F CA CA . A CA 994 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc24 A O ALA 542 A ALA 571 1_555 H NA NA . A NA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc25 A O ASP 589 A ASP 618 1_555 F CA CA . A CA 994 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc26 A O VAL 591 A VAL 620 1_555 H NA NA . A NA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CK7 _atom_sites.fract_transf_matrix[1][1] 0.008243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 990 990 ZN ZN . C 2 ZN A 1 991 991 ZN ZN . D 3 CA A 1 992 992 CA CA . E 3 CA A 1 993 993 CA CA . F 3 CA A 1 994 994 CA CA . G 4 CL A 1 995 995 CL CL . H 5 NA A 1 996 996 NA NA . I 6 SO4 A 1 777 777 SO4 SO4 . J 6 SO4 A 1 778 778 SO4 SO4 . K 7 HOH A 1 997 1 HOH HOH . K 7 HOH A 2 998 2 HOH HOH . K 7 HOH A 3 999 3 HOH HOH . K 7 HOH A 4 1000 4 HOH HOH . K 7 HOH A 5 1001 5 HOH HOH . K 7 HOH A 6 1002 6 HOH HOH . K 7 HOH A 7 1003 7 HOH HOH . K 7 HOH A 8 1004 8 HOH HOH . K 7 HOH A 9 1005 9 HOH HOH . K 7 HOH A 10 1006 10 HOH HOH . K 7 HOH A 11 1007 11 HOH HOH . K 7 HOH A 12 1008 12 HOH HOH . K 7 HOH A 13 1009 13 HOH HOH . K 7 HOH A 14 1010 14 HOH HOH . K 7 HOH A 15 1011 15 HOH HOH . K 7 HOH A 16 1012 16 HOH HOH . K 7 HOH A 17 1013 17 HOH HOH . K 7 HOH A 18 1014 18 HOH HOH . K 7 HOH A 19 1015 19 HOH HOH . K 7 HOH A 20 1016 20 HOH HOH . K 7 HOH A 21 1017 21 HOH HOH . K 7 HOH A 22 1018 22 HOH HOH . K 7 HOH A 23 1019 23 HOH HOH . K 7 HOH A 24 1020 24 HOH HOH . K 7 HOH A 25 1021 25 HOH HOH . K 7 HOH A 26 1022 26 HOH HOH . K 7 HOH A 27 1023 27 HOH HOH . K 7 HOH A 28 1024 28 HOH HOH . K 7 HOH A 29 1025 29 HOH HOH . K 7 HOH A 30 1026 30 HOH HOH . K 7 HOH A 31 1027 31 HOH HOH . K 7 HOH A 32 1028 32 HOH HOH . K 7 HOH A 33 1029 33 HOH HOH . K 7 HOH A 34 1030 34 HOH HOH . K 7 HOH A 35 1031 35 HOH HOH . K 7 HOH A 36 1032 36 HOH HOH . K 7 HOH A 37 1033 37 HOH HOH . K 7 HOH A 38 1034 38 HOH HOH . K 7 HOH A 39 1035 39 HOH HOH . K 7 HOH A 40 1036 40 HOH HOH . K 7 HOH A 41 1037 41 HOH HOH . K 7 HOH A 42 1038 42 HOH HOH . K 7 HOH A 43 1039 43 HOH HOH . K 7 HOH A 44 1040 44 HOH HOH . K 7 HOH A 45 1041 45 HOH HOH . K 7 HOH A 46 1042 46 HOH HOH . K 7 HOH A 47 1043 47 HOH HOH . K 7 HOH A 48 1044 48 HOH HOH . K 7 HOH A 49 1045 49 HOH HOH . K 7 HOH A 50 1046 50 HOH HOH . K 7 HOH A 51 1047 51 HOH HOH . K 7 HOH A 52 1048 52 HOH HOH . K 7 HOH A 53 1049 53 HOH HOH . K 7 HOH A 54 1050 54 HOH HOH . K 7 HOH A 55 1051 55 HOH HOH . K 7 HOH A 56 1052 56 HOH HOH . K 7 HOH A 57 1053 57 HOH HOH . K 7 HOH A 58 1054 58 HOH HOH . K 7 HOH A 59 1055 59 HOH HOH . K 7 HOH A 60 1056 60 HOH HOH . K 7 HOH A 61 1057 61 HOH HOH . K 7 HOH A 62 1058 62 HOH HOH . K 7 HOH A 63 1059 63 HOH HOH . K 7 HOH A 64 1060 64 HOH HOH . K 7 HOH A 65 1061 65 HOH HOH . K 7 HOH A 66 1062 66 HOH HOH . K 7 HOH A 67 1063 67 HOH HOH . K 7 HOH A 68 1064 68 HOH HOH . K 7 HOH A 69 1065 69 HOH HOH . K 7 HOH A 70 1066 70 HOH HOH . K 7 HOH A 71 1067 71 HOH HOH . K 7 HOH A 72 1068 72 HOH HOH . K 7 HOH A 73 1069 73 HOH HOH . K 7 HOH A 74 1070 74 HOH HOH . K 7 HOH A 75 1071 75 HOH HOH . K 7 HOH A 76 1072 76 HOH HOH . K 7 HOH A 77 1073 77 HOH HOH . K 7 HOH A 78 1074 78 HOH HOH . K 7 HOH A 79 1075 79 HOH HOH . K 7 HOH A 80 1076 80 HOH HOH . K 7 HOH A 81 1077 81 HOH HOH . K 7 HOH A 82 1078 82 HOH HOH . K 7 HOH A 83 1079 83 HOH HOH . K 7 HOH A 84 1080 84 HOH HOH . K 7 HOH A 85 1081 85 HOH HOH . K 7 HOH A 86 1082 86 HOH HOH . K 7 HOH A 87 1083 87 HOH HOH . K 7 HOH A 88 1084 88 HOH HOH . K 7 HOH A 89 1085 89 HOH HOH . K 7 HOH A 90 1086 90 HOH HOH . K 7 HOH A 91 1087 91 HOH HOH . K 7 HOH A 92 1088 92 HOH HOH . K 7 HOH A 93 1089 93 HOH HOH . K 7 HOH A 94 1090 94 HOH HOH . K 7 HOH A 95 1091 95 HOH HOH . K 7 HOH A 96 1092 96 HOH HOH . K 7 HOH A 97 1093 97 HOH HOH . K 7 HOH A 98 1094 98 HOH HOH . K 7 HOH A 99 1095 99 HOH HOH . K 7 HOH A 100 1096 100 HOH HOH . K 7 HOH A 101 1097 101 HOH HOH . K 7 HOH A 102 1098 102 HOH HOH . K 7 HOH A 103 1099 103 HOH HOH . K 7 HOH A 104 1100 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 79.547 _atom_site.Cartn_y 100.289 _atom_site.Cartn_z 161.378 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 996 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #