data_1CKO # _model_server_result.job_id frDWdycicvlC8K5NkWFb5Q _model_server_result.datetime_utc '2024-10-11 14:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1CKO # _exptl.entry_id 1CKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 788.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "DIGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CKO _cell.length_a 78.476 _cell.length_b 164.013 _cell.length_c 103.502 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 164.013 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N10 O18 P3' _chem_comp.formula_weight 788.406 _chem_comp.id GP3 _chem_comp.mon_nstd_flag . _chem_comp.name "DIGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9A C8A GP3 sing 129 n y N9A C4A GP3 sing 130 n y N9A C1D GP3 sing 131 n n C8A N7A GP3 doub 132 n y C8A H8A GP3 sing 133 n n N7A C5A GP3 sing 134 n y C5A C6A GP3 sing 135 n n C5A C4A GP3 doub 136 n y C6A O6A GP3 doub 137 n n C6A N1A GP3 sing 138 n n N1A C2A GP3 sing 139 n n N1A H1A GP3 sing 140 n n C2A N2A GP3 sing 141 n n C2A N3A GP3 doub 142 n n N2A H21A GP3 sing 143 n n N2A H22A GP3 sing 144 n n N3A C4A GP3 sing 145 n n O5D C5D GP3 sing 146 n n O5D PA GP3 sing 147 n n C5D C4D GP3 sing 148 n n C5D H51A GP3 sing 149 n n C5D H52A GP3 sing 150 n n C4D O4D GP3 sing 151 n n C4D C3D GP3 sing 152 n n C4D H4D GP3 sing 153 n n O4D C1D GP3 sing 154 n n C3D O3D GP3 sing 155 n n C3D C2D GP3 sing 156 n n C3D H3D GP3 sing 157 n n O3D HO3A GP3 sing 158 n n C2D O2D GP3 sing 159 n n C2D C1D GP3 sing 160 n n C2D H2D GP3 sing 161 n n O2D HO2A GP3 sing 162 n n C1D H1D GP3 sing 163 n n PA O1A GP3 doub 164 n n PA O2A GP3 sing 165 n n PA O3A GP3 sing 166 n n O2A HOA2 GP3 sing 167 n n O3A PB GP3 sing 168 n n PB O1B GP3 doub 169 n n PB O2B GP3 sing 170 n n PB O3B GP3 sing 171 n n O2B HOB2 GP3 sing 172 n n O3B PG GP3 sing 173 n n PG O1G GP3 doub 174 n n PG O2G GP3 sing 175 n n PG O5E GP3 sing 176 n n O2G HOG2 GP3 sing 177 n n O5E C5E GP3 sing 178 n n C5E C4E GP3 sing 179 n n C5E H51B GP3 sing 180 n n C5E H52B GP3 sing 181 n n C4E O4E GP3 sing 182 n n C4E C3E GP3 sing 183 n n C4E H4E GP3 sing 184 n n O4E C1E GP3 sing 185 n n C3E O3E GP3 sing 186 n n C3E C2E GP3 sing 187 n n C3E H3E GP3 sing 188 n n O3E HO3B GP3 sing 189 n n C2E O2E GP3 sing 190 n n C2E C1E GP3 sing 191 n n C2E H2E GP3 sing 192 n n O2E HO2B GP3 sing 193 n n C1E N9B GP3 sing 194 n n C1E H1E GP3 sing 195 n n N9B C8B GP3 sing 196 n y N9B C4B GP3 sing 197 n y C8B N7B GP3 doub 198 n y C8B H8B GP3 sing 199 n n N7B C5B GP3 sing 200 n y C5B C6B GP3 sing 201 n n C5B C4B GP3 doub 202 n y C6B O6B GP3 doub 203 n n C6B N1B GP3 sing 204 n n N1B C2B GP3 sing 205 n n N1B H1B GP3 sing 206 n n C2B N2B GP3 sing 207 n n C2B N3B GP3 doub 208 n n N2B H21B GP3 sing 209 n n N2B H22B GP3 sing 210 n n N3B C4B GP3 sing 211 n n # _atom_sites.entry_id 1CKO _atom_sites.fract_transf_matrix[1][1] 0.012743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 888 888 ZN ZN . C 3 GP3 A 1 999 999 GP3 GP3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9A GP3 . . . C 3 44.687 61.859 -3.237 1 59.19 ? N9A GP3 999 A 1 HETATM 2 C C8A GP3 . . . C 3 45.326 62.778 -2.439 1 64.45 ? C8A GP3 999 A 1 HETATM 3 N N7A GP3 . . . C 3 44.936 64.034 -2.568 1 53.09 ? N7A GP3 999 A 1 HETATM 4 C C5A GP3 . . . C 3 43.978 63.957 -3.55 1 42.64 ? C5A GP3 999 A 1 HETATM 5 C C6A GP3 . . . C 3 43.204 64.964 -4.065 1 52.2 ? C6A GP3 999 A 1 HETATM 6 O O6A GP3 . . . C 3 43.279 66.116 -3.709 1 75.17 ? O6A GP3 999 A 1 HETATM 7 N N1A GP3 . . . C 3 42.308 64.54 -5.036 1 48.46 ? N1A GP3 999 A 1 HETATM 8 C C2A GP3 . . . C 3 42.203 63.258 -5.449 1 38.89 ? C2A GP3 999 A 1 HETATM 9 N N2A GP3 . . . C 3 41.308 62.965 -6.421 1 56.91 ? N2A GP3 999 A 1 HETATM 10 N N3A GP3 . . . C 3 42.931 62.269 -4.95 1 46.08 ? N3A GP3 999 A 1 HETATM 11 C C4A GP3 . . . C 3 43.804 62.672 -3.997 1 50.84 ? C4A GP3 999 A 1 HETATM 12 O O5D GP3 . . . C 3 46.514 58.176 -6.505 1 52.61 ? O5D GP3 999 A 1 HETATM 13 C C5D GP3 . . . C 3 45.17 58.181 -6.027 1 37.18 ? C5D GP3 999 A 1 HETATM 14 C C4D GP3 . . . C 3 45.083 58.568 -4.632 1 41.49 ? C4D GP3 999 A 1 HETATM 15 O O4D GP3 . . . C 3 45.508 59.904 -4.429 1 49.82 ? O4D GP3 999 A 1 HETATM 16 C C3D GP3 . . . C 3 43.658 58.569 -4.287 1 35.58 ? C3D GP3 999 A 1 HETATM 17 O O3D GP3 . . . C 3 43.158 57.264 -4.015 1 27.72 ? O3D GP3 999 A 1 HETATM 18 C C2D GP3 . . . C 3 43.614 59.375 -3.097 1 48.53 ? C2D GP3 999 A 1 HETATM 19 O O2D GP3 . . . C 3 43.749 58.483 -1.996 1 41.58 ? O2D GP3 999 A 1 HETATM 20 C C1D GP3 . . . C 3 44.883 60.342 -3.236 1 40.91 ? C1D GP3 999 A 1 HETATM 21 P PA GP3 . . . C 3 47.164 56.795 -6.906 1 37.27 ? PA GP3 999 A 1 HETATM 22 O O1A GP3 . . . C 3 48.126 57.031 -8.005 1 35.08 ? O1A GP3 999 A 1 HETATM 23 O O2A GP3 . . . C 3 47.597 56.082 -5.687 1 57.66 ? O2A GP3 999 A 1 HETATM 24 O O3A GP3 . . . C 3 45.912 56.095 -7.447 1 57.68 ? O3A GP3 999 A 1 HETATM 25 P PB GP3 . . . C 3 45.746 54.908 -8.355 1 60.51 ? PB GP3 999 A 1 HETATM 26 O O1B GP3 . . . C 3 46.552 55.143 -9.559 1 85.83 ? O1B GP3 999 A 1 HETATM 27 O O2B GP3 . . . C 3 44.272 54.677 -8.491 1 66.41 ? O2B GP3 999 A 1 HETATM 28 O O3B GP3 . . . C 3 46.365 53.68 -7.552 1 65.42 ? O3B GP3 999 A 1 HETATM 29 P PG GP3 . . . C 3 45.72 52.279 -7.111 1 53.85 ? PG GP3 999 A 1 HETATM 30 O O1G GP3 . . . C 3 46.786 51.503 -6.37 1 64.26 ? O1G GP3 999 A 1 HETATM 31 O O2G GP3 . . . C 3 45.067 51.613 -8.279 1 60.97 ? O2G GP3 999 A 1 HETATM 32 O O5E GP3 . . . C 3 44.602 52.756 -6.052 1 40.79 ? O5E GP3 999 A 1 HETATM 33 C C5E GP3 . . . C 3 44.977 53.492 -4.838 1 33.09 ? C5E GP3 999 A 1 HETATM 34 C C4E GP3 . . . C 3 43.8 54.157 -3.993 1 39.2 ? C4E GP3 999 A 1 HETATM 35 O O4E GP3 . . . C 3 42.681 53.287 -3.758 1 41.12 ? O4E GP3 999 A 1 HETATM 36 C C3E GP3 . . . C 3 44.22 54.592 -2.603 1 32.13 ? C3E GP3 999 A 1 HETATM 37 O O3E GP3 . . . C 3 44.978 55.813 -2.594 1 33.18 ? O3E GP3 999 A 1 HETATM 38 C C2E GP3 . . . C 3 42.959 54.761 -1.898 1 43.96 ? C2E GP3 999 A 1 HETATM 39 O O2E GP3 . . . C 3 42.514 56.096 -2.105 1 54.3 ? O2E GP3 999 A 1 HETATM 40 C C1E GP3 . . . C 3 41.977 53.763 -2.612 1 41.61 ? C1E GP3 999 A 1 HETATM 41 N N9B GP3 . . . C 3 41.377 52.677 -1.761 1 38.34 ? N9B GP3 999 A 1 HETATM 42 C C8B GP3 . . . C 3 40.059 52.368 -1.601 1 52.46 ? C8B GP3 999 A 1 HETATM 43 N N7B GP3 . . . C 3 39.751 51.455 -0.729 1 64.46 ? N7B GP3 999 A 1 HETATM 44 C C5B GP3 . . . C 3 41.005 51.109 -0.228 1 72.63 ? C5B GP3 999 A 1 HETATM 45 C C6B GP3 . . . C 3 41.34 50.15 0.786 1 84.01 ? C6B GP3 999 A 1 HETATM 46 O O6B GP3 . . . C 3 40.543 49.461 1.439 1 100.92 ? O6B GP3 999 A 1 HETATM 47 N N1B GP3 . . . C 3 42.727 50.093 1.033 1 88.62 ? N1B GP3 999 A 1 HETATM 48 C C2B GP3 . . . C 3 43.68 50.845 0.342 1 79.97 ? C2B GP3 999 A 1 HETATM 49 N N2B GP3 . . . C 3 44.981 50.69 0.659 1 101.2 ? N2B GP3 999 A 1 HETATM 50 N N3B GP3 . . . C 3 43.341 51.736 -0.616 1 69.3 ? N3B GP3 999 A 1 HETATM 51 C C4B GP3 . . . C 3 42.007 51.837 -0.838 1 60.71 ? C4B GP3 999 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 51 #