data_1CKT # _model_server_result.job_id mzG6OdRHln6F6OlipOKWQg _model_server_result.datetime_utc '2024-12-22 05:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ckt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":99}' # _entry.id 1CKT # _exptl.entry_id 1CKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.82 _cell.angle_gamma 90 _cell.entry_id 1CKT _cell.length_a 105.21 _cell.length_b 50.41 _cell.length_c 53.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CKT _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 2 B DC 102 1_555 A P 5IU 3 B 5IU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale2 A O3' 5IU 3 B 5IU 103 1_555 A P DC 4 B DC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? metalc ? metalc1 D PT1 CPT . B CPT 99 1_555 A N7 DG 8 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc2 D PT1 CPT . B CPT 99 1_555 A C8 DG 8 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc3 D PT1 CPT . B CPT 99 1_555 A C5 DG 8 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc4 D PT1 CPT . B CPT 99 1_555 A N7 DG 9 B DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 D PT1 CPT . B CPT 99 1_555 A C8 DG 9 B DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc6 D PT1 CPT . B CPT 99 1_555 A C5 DG 9 B DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 B DC 101 1_555 B N1 DG 16 C DG 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 B DC 101 1_555 B O6 DG 16 C DG 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 B DC 101 1_555 B N2 DG 16 C DG 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 B DC 102 1_555 B N1 DG 15 C DG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 B DC 102 1_555 B O6 DG 15 C DG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 B DC 102 1_555 B N2 DG 15 C DG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 5IU 3 B 5IU 103 1_555 B N1 DA 14 C DA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 5IU 3 B 5IU 103 1_555 B N6 DA 14 C DA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 B DC 104 1_555 B N1 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 B DC 104 1_555 B O6 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 B DC 104 1_555 B N2 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 B DT 105 1_555 B N1 DA 12 C DA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 B DT 105 1_555 B N6 DA 12 C DA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 B DC 106 1_555 B N1 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 B DC 106 1_555 B O6 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 B DC 106 1_555 B N2 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 B DT 107 1_555 B N1 DA 10 C DA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 B DT 107 1_555 B N6 DA 10 C DA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 8 B DG 108 1_555 B N3 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 8 B DG 108 1_555 B O2 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 8 B DG 108 1_555 B N4 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 9 B DG 109 1_555 B N3 DC 8 C DC 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 9 B DG 109 1_555 B O2 DC 8 C DC 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 9 B DG 109 1_555 B N4 DC 8 C DC 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DA 10 B DA 110 1_555 B N3 DT 7 C DT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 DA 10 B DA 110 1_555 B O4 DT 7 C DT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 B DC 111 1_555 B N1 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 B DC 111 1_555 B O6 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 B DC 111 1_555 B N2 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DC 12 B DC 112 1_555 B N1 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 DC 12 B DC 112 1_555 B O6 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 DC 12 B DC 112 1_555 B N2 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DT 13 B DT 113 1_555 B N1 DA 4 C DA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O4 DT 13 B DT 113 1_555 B N6 DA 4 C DA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N3 DT 14 B DT 114 1_555 B N1 DA 3 C DA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O4 DT 14 B DT 114 1_555 B N6 DA 3 C DA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N3 DC 15 B DC 115 1_555 B N1 DG 2 C DG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N4 DC 15 B DC 115 1_555 B O6 DG 2 C DG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O2 DC 15 B DC 115 1_555 B N2 DG 2 C DG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 DC 16 B DC 116 1_555 B N1 DG 1 C DG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N4 DC 16 B DC 116 1_555 B O6 DG 1 C DG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O2 DC 16 B DC 116 1_555 B N2 DG 1 C DG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 104 n n PT1 N2 CPT sing 105 n n N1 H11 CPT sing 106 n n N1 H12 CPT sing 107 n n N1 H13 CPT sing 108 n n N2 H21 CPT sing 109 n n N2 H22 CPT sing 110 n n N2 H23 CPT sing 111 n n CL2 PT1 CPT sing 112 n n CL1 PT1 CPT sing 113 n n # _atom_sites.entry_id 1CKT _atom_sites.fract_transf_matrix[1][1] 0.009505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001645 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CPT B 1 99 99 CPT CPT . E 5 HOH B 1 301 301 HOH HOH . E 5 HOH B 2 305 305 HOH HOH . E 5 HOH B 3 306 306 HOH HOH . E 5 HOH B 4 309 309 HOH HOH . E 5 HOH B 5 310 310 HOH HOH . E 5 HOH B 6 312 312 HOH HOH . E 5 HOH B 7 317 317 HOH HOH . E 5 HOH B 8 319 319 HOH HOH . E 5 HOH B 9 324 324 HOH HOH . E 5 HOH B 10 325 325 HOH HOH . E 5 HOH B 11 328 328 HOH HOH . E 5 HOH B 12 330 330 HOH HOH . E 5 HOH B 13 334 334 HOH HOH . E 5 HOH B 14 343 343 HOH HOH . E 5 HOH B 15 345 345 HOH HOH . E 5 HOH B 16 351 351 HOH HOH . E 5 HOH B 17 355 355 HOH HOH . E 5 HOH B 18 356 356 HOH HOH . E 5 HOH B 19 358 358 HOH HOH . E 5 HOH B 20 359 359 HOH HOH . E 5 HOH B 21 363 363 HOH HOH . E 5 HOH B 22 365 365 HOH HOH . E 5 HOH B 23 371 371 HOH HOH . E 5 HOH B 24 374 374 HOH HOH . F 5 HOH C 1 304 304 HOH HOH . F 5 HOH C 2 308 308 HOH HOH . F 5 HOH C 3 311 311 HOH HOH . F 5 HOH C 4 313 313 HOH HOH . F 5 HOH C 5 315 315 HOH HOH . F 5 HOH C 6 316 316 HOH HOH . F 5 HOH C 7 323 323 HOH HOH . F 5 HOH C 8 326 326 HOH HOH . F 5 HOH C 9 331 331 HOH HOH . F 5 HOH C 10 335 335 HOH HOH . F 5 HOH C 11 336 336 HOH HOH . F 5 HOH C 12 338 338 HOH HOH . F 5 HOH C 13 339 339 HOH HOH . F 5 HOH C 14 344 344 HOH HOH . F 5 HOH C 15 346 346 HOH HOH . F 5 HOH C 16 347 347 HOH HOH . F 5 HOH C 17 348 348 HOH HOH . F 5 HOH C 18 349 349 HOH HOH . F 5 HOH C 19 352 352 HOH HOH . F 5 HOH C 20 353 353 HOH HOH . F 5 HOH C 21 357 357 HOH HOH . F 5 HOH C 22 364 364 HOH HOH . F 5 HOH C 23 366 366 HOH HOH . F 5 HOH C 24 367 367 HOH HOH . F 5 HOH C 25 369 369 HOH HOH . F 5 HOH C 26 370 370 HOH HOH . F 5 HOH C 27 372 372 HOH HOH . G 5 HOH A 1 302 302 HOH HOH . G 5 HOH A 2 303 303 HOH HOH . G 5 HOH A 3 307 307 HOH HOH . G 5 HOH A 4 314 314 HOH HOH . G 5 HOH A 5 318 318 HOH HOH . G 5 HOH A 6 320 320 HOH HOH . G 5 HOH A 7 321 321 HOH HOH . G 5 HOH A 8 322 322 HOH HOH . G 5 HOH A 9 327 327 HOH HOH . G 5 HOH A 10 329 329 HOH HOH . G 5 HOH A 11 332 332 HOH HOH . G 5 HOH A 12 333 333 HOH HOH . G 5 HOH A 13 337 337 HOH HOH . G 5 HOH A 14 340 340 HOH HOH . G 5 HOH A 15 341 341 HOH HOH . G 5 HOH A 16 342 342 HOH HOH . G 5 HOH A 17 350 350 HOH HOH . G 5 HOH A 18 354 354 HOH HOH . G 5 HOH A 19 360 360 HOH HOH . G 5 HOH A 20 361 361 HOH HOH . G 5 HOH A 21 362 362 HOH HOH . G 5 HOH A 22 368 368 HOH HOH . G 5 HOH A 23 373 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . . . D 4 26.307 0.297 21.823 1 29.88 ? PT1 CPT 99 B 1 HETATM 2 N N1 CPT . . . D 4 28.094 -0.488 21.977 1 2 ? N1 CPT 99 B 1 HETATM 3 N N2 CPT . . . D 4 27.091 1.798 20.791 1 4.29 ? N2 CPT 99 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #