data_1CLA # _model_server_result.job_id XDTN3FqXc7HsE_ZyqiAwpQ _model_server_result.datetime_utc '2024-12-26 15:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":221}' # _entry.id 1CLA # _exptl.entry_id 1CLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHLORAMPHENICOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CLA _cell.length_a 107.34 _cell.length_b 107.34 _cell.length_c 123.28 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3 A,B,C,D,E 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 18 A GLU 23 1_555 B CO CO . A CO 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? metalc ? metalc2 A OE1 GLU 18 A GLU 23 5_555 B CO CO . A CO 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? metalc ? metalc3 A ND1 HIS 22 A HIS 27 1_555 B CO CO . A CO 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 A ND1 HIS 22 A HIS 27 5_555 B CO CO . A CO 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc5 C CO CO . A CO 223 1_555 E O HOH . A HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc6 C CO CO . A CO 223 1_555 E O HOH . A HOH 282 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C11 H12 Cl2 N2 O5' _chem_comp.formula_weight 323.129 _chem_comp.id CLM _chem_comp.mon_nstd_flag . _chem_comp.name CHLORAMPHENICOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CL1 CLM sing 70 n n C1 CL2 CLM sing 71 n n C1 C2 CLM sing 72 n n C1 H1 CLM sing 73 n n C2 O2 CLM doub 74 n n C2 N2 CLM sing 75 n n N2 C3 CLM sing 76 n n N2 HN2 CLM sing 77 n n C3 C4 CLM sing 78 n n C3 C5 CLM sing 79 n n C3 H3 CLM sing 80 n n C4 O4 CLM sing 81 n n C4 H41 CLM sing 82 n n C4 H42 CLM sing 83 n n O4 HO4 CLM sing 84 n n C5 O5 CLM sing 85 n n C5 C6 CLM sing 86 n n C5 H5 CLM sing 87 n n O5 HO5 CLM sing 88 n n C6 C7 CLM doub 89 n y C6 C11 CLM sing 90 n y C7 C8 CLM sing 91 n y C7 H7 CLM sing 92 n n C8 C9 CLM doub 93 n y C8 H8 CLM sing 94 n n C9 N9 CLM sing 95 n n C9 C10 CLM sing 96 n y N9 O9A CLM sing 97 n n N9 O9B CLM doub 98 n n C10 C11 CLM doub 99 n y C10 H10 CLM sing 100 n n C11 H11 CLM sing 101 n n # _atom_sites.entry_id 1CLA _atom_sites.fract_transf_matrix[1][1] 0.009316 _atom_sites.fract_transf_matrix[1][2] 0.005379 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 222 222 CO CO . C 2 CO A 1 223 223 CO CO . D 3 CLM A 1 221 221 CLM CLM . E 4 HOH A 1 224 224 HOH HOH . E 4 HOH A 2 225 225 HOH HOH . E 4 HOH A 3 226 226 HOH HOH . E 4 HOH A 4 227 227 HOH HOH . E 4 HOH A 5 228 228 HOH HOH . E 4 HOH A 6 229 229 HOH HOH . E 4 HOH A 7 230 230 HOH HOH . E 4 HOH A 8 231 231 HOH HOH . E 4 HOH A 9 232 232 HOH HOH . E 4 HOH A 10 233 233 HOH HOH . E 4 HOH A 11 234 234 HOH HOH . E 4 HOH A 12 235 235 HOH HOH . E 4 HOH A 13 236 236 HOH HOH . E 4 HOH A 14 237 237 HOH HOH . E 4 HOH A 15 238 238 HOH HOH . E 4 HOH A 16 239 239 HOH HOH . E 4 HOH A 17 240 240 HOH HOH . E 4 HOH A 18 241 241 HOH HOH . E 4 HOH A 19 242 242 HOH HOH . E 4 HOH A 20 243 243 HOH HOH . E 4 HOH A 21 244 244 HOH HOH . E 4 HOH A 22 245 245 HOH HOH . E 4 HOH A 23 246 246 HOH HOH . E 4 HOH A 24 247 247 HOH HOH . E 4 HOH A 25 248 248 HOH HOH . E 4 HOH A 26 249 249 HOH HOH . E 4 HOH A 27 250 250 HOH HOH . E 4 HOH A 28 251 251 HOH HOH . E 4 HOH A 29 252 252 HOH HOH . E 4 HOH A 30 253 253 HOH HOH . E 4 HOH A 31 254 254 HOH HOH . E 4 HOH A 32 255 255 HOH HOH . E 4 HOH A 33 256 256 HOH HOH . E 4 HOH A 34 257 257 HOH HOH . E 4 HOH A 35 258 258 HOH HOH . E 4 HOH A 36 259 259 HOH HOH . E 4 HOH A 37 260 260 HOH HOH . E 4 HOH A 38 261 261 HOH HOH . E 4 HOH A 39 262 262 HOH HOH . E 4 HOH A 40 263 263 HOH HOH . E 4 HOH A 41 264 264 HOH HOH . E 4 HOH A 42 265 265 HOH HOH . E 4 HOH A 43 266 266 HOH HOH . E 4 HOH A 44 267 267 HOH HOH . E 4 HOH A 45 268 268 HOH HOH . E 4 HOH A 46 269 269 HOH HOH . E 4 HOH A 47 270 270 HOH HOH . E 4 HOH A 48 271 271 HOH HOH . E 4 HOH A 49 272 272 HOH HOH . E 4 HOH A 50 273 273 HOH HOH . E 4 HOH A 51 274 274 HOH HOH . E 4 HOH A 52 275 275 HOH HOH . E 4 HOH A 53 276 276 HOH HOH . E 4 HOH A 54 277 277 HOH HOH . E 4 HOH A 55 278 278 HOH HOH . E 4 HOH A 56 279 279 HOH HOH . E 4 HOH A 57 281 281 HOH HOH . E 4 HOH A 58 282 282 HOH HOH . E 4 HOH A 59 283 283 HOH HOH . E 4 HOH A 60 284 284 HOH HOH . E 4 HOH A 61 285 285 HOH HOH . E 4 HOH A 62 286 286 HOH HOH . E 4 HOH A 63 287 287 HOH HOH . E 4 HOH A 64 288 288 HOH HOH . E 4 HOH A 65 289 289 HOH HOH . E 4 HOH A 66 291 291 HOH HOH . E 4 HOH A 67 292 292 HOH HOH . E 4 HOH A 68 293 293 HOH HOH . E 4 HOH A 69 294 294 HOH HOH . E 4 HOH A 70 295 295 HOH HOH . E 4 HOH A 71 296 296 HOH HOH . E 4 HOH A 72 297 297 HOH HOH . E 4 HOH A 73 298 298 HOH HOH . E 4 HOH A 74 299 299 HOH HOH . E 4 HOH A 75 300 300 HOH HOH . E 4 HOH A 76 301 301 HOH HOH . E 4 HOH A 77 302 302 HOH HOH . E 4 HOH A 78 303 303 HOH HOH . E 4 HOH A 79 304 304 HOH HOH . E 4 HOH A 80 306 306 HOH HOH . E 4 HOH A 81 307 307 HOH HOH . E 4 HOH A 82 308 308 HOH HOH . E 4 HOH A 83 309 309 HOH HOH . E 4 HOH A 84 310 310 HOH HOH . E 4 HOH A 85 311 311 HOH HOH . E 4 HOH A 86 312 312 HOH HOH . E 4 HOH A 87 313 313 HOH HOH . E 4 HOH A 88 314 314 HOH HOH . E 4 HOH A 89 315 315 HOH HOH . E 4 HOH A 90 316 316 HOH HOH . E 4 HOH A 91 318 318 HOH HOH . E 4 HOH A 92 319 319 HOH HOH . E 4 HOH A 93 320 320 HOH HOH . E 4 HOH A 94 321 321 HOH HOH . E 4 HOH A 95 322 322 HOH HOH . E 4 HOH A 96 323 323 HOH HOH . E 4 HOH A 97 325 325 HOH HOH . E 4 HOH A 98 328 328 HOH HOH . E 4 HOH A 99 329 329 HOH HOH . E 4 HOH A 100 332 332 HOH HOH . E 4 HOH A 101 334 334 HOH HOH . E 4 HOH A 102 335 335 HOH HOH . E 4 HOH A 103 336 336 HOH HOH . E 4 HOH A 104 338 338 HOH HOH . E 4 HOH A 105 341 341 HOH HOH . E 4 HOH A 106 345 345 HOH HOH . E 4 HOH A 107 346 346 HOH HOH . E 4 HOH A 108 347 347 HOH HOH . E 4 HOH A 109 348 348 HOH HOH . E 4 HOH A 110 349 349 HOH HOH . E 4 HOH A 111 350 350 HOH HOH . E 4 HOH A 112 351 351 HOH HOH . E 4 HOH A 113 352 352 HOH HOH . E 4 HOH A 114 353 353 HOH HOH . E 4 HOH A 115 354 354 HOH HOH . E 4 HOH A 116 356 356 HOH HOH . E 4 HOH A 117 357 357 HOH HOH . E 4 HOH A 118 358 358 HOH HOH . E 4 HOH A 119 361 361 HOH HOH . E 4 HOH A 120 365 365 HOH HOH . E 4 HOH A 121 366 366 HOH HOH . E 4 HOH A 122 367 367 HOH HOH . E 4 HOH A 123 371 371 HOH HOH . E 4 HOH A 124 375 375 HOH HOH . E 4 HOH A 125 380 380 HOH HOH . E 4 HOH A 126 382 382 HOH HOH . E 4 HOH A 127 397 397 HOH HOH . E 4 HOH A 128 399 399 HOH HOH . E 4 HOH A 129 401 401 HOH HOH . E 4 HOH A 130 405 405 HOH HOH . E 4 HOH A 131 411 411 HOH HOH . E 4 HOH A 132 417 417 HOH HOH . E 4 HOH A 133 418 418 HOH HOH . E 4 HOH A 134 420 420 HOH HOH . E 4 HOH A 135 432 432 HOH HOH . E 4 HOH A 136 471 471 HOH HOH . E 4 HOH A 137 473 473 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLM . . . D 3 1.043 17.152 14.191 0.33 18.46 ? C1 CLM 221 A 1 HETATM 2 CL CL1 CLM . . . D 3 1.998 16.763 12.831 0.33 21.79 ? CL1 CLM 221 A 1 HETATM 3 CL CL2 CLM . . . D 3 0.093 18.614 13.914 0.33 21.36 ? CL2 CLM 221 A 1 HETATM 4 C C2 CLM . . . D 3 0.005 16.032 14.451 0.33 15.7 ? C2 CLM 221 A 1 HETATM 5 O O2 CLM . . . D 3 -0.657 15.513 13.568 0.33 15.76 ? O2 CLM 221 A 1 HETATM 6 N N2 CLM . . . D 3 -0.076 15.689 15.725 0.33 14.56 ? N2 CLM 221 A 1 HETATM 7 C C3 CLM . . . D 3 -0.975 14.659 16.237 0.33 14.66 ? C3 CLM 221 A 1 HETATM 8 C C4 CLM . . . D 3 -1.807 15.253 17.329 0.33 14.85 ? C4 CLM 221 A 1 HETATM 9 O O4 CLM . . . D 3 -2.77 14.395 17.88 0.33 16.12 ? O4 CLM 221 A 1 HETATM 10 C C5 CLM . . . D 3 -0.246 13.376 16.545 0.33 13.93 ? C5 CLM 221 A 1 HETATM 11 O O5 CLM . . . D 3 0.573 13.708 17.666 0.33 12.76 ? O5 CLM 221 A 1 HETATM 12 C C6 CLM . . . D 3 0.564 12.939 15.333 0.33 15.93 ? C6 CLM 221 A 1 HETATM 13 C C7 CLM . . . D 3 -0.036 12.126 14.362 0.33 16.47 ? C7 CLM 221 A 1 HETATM 14 C C8 CLM . . . D 3 0.676 11.652 13.323 0.33 17.25 ? C8 CLM 221 A 1 HETATM 15 C C9 CLM . . . D 3 1.971 11.988 13.21 0.33 19.49 ? C9 CLM 221 A 1 HETATM 16 N N9 CLM . . . D 3 2.8 11.505 12.093 0.33 22.05 ? N9 CLM 221 A 1 HETATM 17 O O9A CLM . . . D 3 3.881 12.006 11.881 0.33 24.05 ? O9A CLM 221 A 1 HETATM 18 O O9B CLM . . . D 3 2.3 10.585 11.43 0.33 24.14 ? O9B CLM 221 A 1 HETATM 19 C C10 CLM . . . D 3 2.636 12.812 14.144 0.33 18.15 ? C10 CLM 221 A 1 HETATM 20 C C11 CLM . . . D 3 1.899 13.271 15.2 0.33 15.76 ? C11 CLM 221 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #