data_1CLU
#
_model_server_result.job_id            Nh2zW_TpPEnNTMgD1Lt7Rw 
_model_server_result.datetime_utc      '2025-02-27 01:45:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1clu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":167}' 
#
_entry.id    1CLU 
#
_exptl.entry_id    1CLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              716.428 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1CLU 
_cell.length_a            40.2 
_cell.length_b            40.2 
_cell.length_c            161.97 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CLU 
_symmetry.cell_setting             trigonal 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 C O2B DBG . A DBG 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc3 C O2G DBG . A DBG 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc4 B MG MG . A MG 168 1_555 D O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc5 B MG MG . A MG 168 1_555 D O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 B MG MG . A MG 168 1_555 D O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C23 H27 N8 O13 P3' 
_chem_comp.formula_weight    716.428 
_chem_comp.id                DBG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DABP-GPPNHP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 DBG sing 83 n y 
C22 C17 DBG doub 84 n y 
C22 H22 DBG sing 85 n n 
C21 C20 DBG doub 86 n y 
C21 H21 DBG sing 87 n n 
C20 C19 DBG sing 88 n y 
C20 H20 DBG sing 89 n n 
C19 C18 DBG doub 90 n y 
C19 H19 DBG sing 91 n n 
C18 C17 DBG sing 92 n y 
C18 H18 DBG sing 93 n n 
C17 C16 DBG sing 94 n n 
C16 O16 DBG doub 95 n n 
C16 C13 DBG sing 96 n n 
C15 N15 DBG sing 97 n n 
C15 C14 DBG doub 98 n y 
C15 C10 DBG sing 99 n y 
N15 H151 DBG sing 100 n n 
N15 H152 DBG sing 101 n n 
C14 C13 DBG sing 102 n y 
C14 H14 DBG sing 103 n n 
C13 C12 DBG doub 104 n y 
C12 C11 DBG sing 105 n y 
C12 H12 DBG sing 106 n n 
C11 C10 DBG doub 107 n y 
C11 H11 DBG sing 108 n n 
C10 N3G DBG sing 109 n n 
N3G PG DBG sing 110 n n 
N3G HNG3 DBG sing 111 n n 
PG O1G DBG sing 112 n n 
PG O2G DBG doub 113 n n 
PG N3B DBG sing 114 n n 
O1G HOG1 DBG sing 115 n n 
N3B PB DBG sing 116 n n 
N3B HNB3 DBG sing 117 n n 
PB O1B DBG sing 118 n n 
PB O2B DBG doub 119 n n 
PB O3A DBG sing 120 n n 
O1B HOB1 DBG sing 121 n n 
O3A PA DBG sing 122 n n 
PA O1A DBG sing 123 n n 
PA O2A DBG doub 124 n n 
PA O5' DBG sing 125 n n 
O1A HOA1 DBG sing 126 n n 
O5' C5' DBG sing 127 n n 
C5' C4' DBG sing 128 n n 
C5' "H5'1" DBG sing 129 n n 
C5' "H5'2" DBG sing 130 n n 
C4' O4' DBG sing 131 n n 
C4' C3' DBG sing 132 n n 
C4' H4' DBG sing 133 n n 
O4' C1' DBG sing 134 n n 
C2' O2' DBG sing 135 n n 
C2' C3' DBG sing 136 n n 
C2' C1' DBG sing 137 n n 
C2' H2' DBG sing 138 n n 
O2' HO2' DBG sing 139 n n 
C3' O3' DBG sing 140 n n 
C3' H3' DBG sing 141 n n 
O3' HO3' DBG sing 142 n n 
C1' N9 DBG sing 143 n n 
C1' H1' DBG sing 144 n n 
N9 C4 DBG sing 145 n y 
N9 C8 DBG sing 146 n y 
C4 N3 DBG sing 147 n y 
C4 C5 DBG doub 148 n y 
N3 C2 DBG doub 149 n y 
C2 N2 DBG sing 150 n n 
C2 N1 DBG sing 151 n y 
N2 HN21 DBG sing 152 n n 
N2 HN22 DBG sing 153 n n 
N1 C6 DBG sing 154 n y 
N1 HN1 DBG sing 155 n n 
C6 O6 DBG doub 156 n n 
C6 C5 DBG sing 157 n y 
C5 N7 DBG sing 158 n y 
N7 C8 DBG doub 159 n y 
C8 H8 DBG sing 160 n n 
#
_atom_sites.entry_id                     1CLU 
_atom_sites.fract_transf_matrix[1][1]    0.024876 
_atom_sites.fract_transf_matrix[1][2]    0.014362 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 168 168 MG MG . 
C 3 DBG A 1 167 167 DBG DBG . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
D 4 HOH A 12 212 212 HOH HOH . 
D 4 HOH A 13 213 213 HOH HOH . 
D 4 HOH A 14 214 214 HOH HOH . 
D 4 HOH A 15 215 215 HOH HOH . 
D 4 HOH A 16 216 216 HOH HOH . 
D 4 HOH A 17 217 217 HOH HOH . 
D 4 HOH A 18 218 218 HOH HOH . 
D 4 HOH A 19 219 219 HOH HOH . 
D 4 HOH A 20 220 220 HOH HOH . 
D 4 HOH A 21 221 221 HOH HOH . 
D 4 HOH A 22 222 222 HOH HOH . 
D 4 HOH A 23 223 223 HOH HOH . 
D 4 HOH A 24 224 224 HOH HOH . 
D 4 HOH A 25 225 225 HOH HOH . 
D 4 HOH A 26 226 226 HOH HOH . 
D 4 HOH A 27 227 227 HOH HOH . 
D 4 HOH A 28 228 228 HOH HOH . 
D 4 HOH A 29 229 229 HOH HOH . 
D 4 HOH A 30 230 230 HOH HOH . 
D 4 HOH A 31 231 231 HOH HOH . 
D 4 HOH A 32 232 232 HOH HOH . 
D 4 HOH A 33 233 233 HOH HOH . 
D 4 HOH A 34 234 234 HOH HOH . 
D 4 HOH A 35 235 235 HOH HOH . 
D 4 HOH A 36 236 236 HOH HOH . 
D 4 HOH A 37 237 237 HOH HOH . 
D 4 HOH A 38 238 238 HOH HOH . 
D 4 HOH A 39 239 239 HOH HOH . 
D 4 HOH A 40 240 240 HOH HOH . 
D 4 HOH A 41 241 241 HOH HOH . 
D 4 HOH A 42 242 242 HOH HOH . 
D 4 HOH A 43 243 243 HOH HOH . 
D 4 HOH A 44 244 244 HOH HOH . 
D 4 HOH A 45 245 245 HOH HOH . 
D 4 HOH A 46 246 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 DBG . . . C 3 5.685 33.369 24.792 1 19.32 ? C10 DBG 167 A 1 
HETATM 2 N N3G DBG . . . C 3 5.453 33.392 23.443 1 19.38 ? N3G DBG 167 A 1 
HETATM 3 P PG DBG . . . C 3 5.637 32.664 22.103 1 14.71 ? PG DBG 167 A 1 
HETATM 4 O O1G DBG . . . C 3 5.422 31.226 22.348 1 14.04 ? O1G DBG 167 A 1 
HETATM 5 O O2G DBG . . . C 3 4.645 33.178 21.176 1 13.13 ? O2G DBG 167 A 1 
HETATM 6 N N3B DBG . . . C 3 7.129 32.908 21.548 1 13.76 ? N3B DBG 167 A 1 
HETATM 7 P PB DBG . . . C 3 7.552 32.396 20.085 1 11.4 ? PB DBG 167 A 1 
HETATM 8 O O1B DBG . . . C 3 7.627 30.915 20 1 10.57 ? O1B DBG 167 A 1 
HETATM 9 O O2B DBG . . . C 3 6.711 32.995 19.051 1 12.44 ? O2B DBG 167 A 1 
HETATM 10 O O3A DBG . . . C 3 9.039 32.984 19.902 1 9.97 ? O3A DBG 167 A 1 
HETATM 11 P PA DBG . . . C 3 9.535 34.485 19.553 1 11.99 ? PA DBG 167 A 1 
HETATM 12 O O1A DBG . . . C 3 9.552 34.73 18.071 1 12.89 ? O1A DBG 167 A 1 
HETATM 13 O O2A DBG . . . C 3 8.741 35.467 20.32 1 12.9 ? O2A DBG 167 A 1 
HETATM 14 O O5' DBG . . . C 3 11.024 34.441 20.097 1 12.38 ? O5' DBG 167 A 1 
HETATM 15 C C5' DBG . . . C 3 11.359 34.176 21.443 1 15.5 ? C5' DBG 167 A 1 
HETATM 16 C C4' DBG . . . C 3 12.74 34.655 21.724 1 14.52 ? C4' DBG 167 A 1 
HETATM 17 O O4' DBG . . . C 3 13.715 33.918 20.946 1 13.57 ? O4' DBG 167 A 1 
HETATM 18 C C2' DBG . . . C 3 13.556 36.026 19.923 1 16.55 ? C2' DBG 167 A 1 
HETATM 19 O O2' DBG . . . C 3 14.314 37.161 19.576 1 17.43 ? O2' DBG 167 A 1 
HETATM 20 C C3' DBG . . . C 3 12.973 36.135 21.35 1 18.53 ? C3' DBG 167 A 1 
HETATM 21 O O3' DBG . . . C 3 13.898 36.74 22.25 1 23.71 ? O3' DBG 167 A 1 
HETATM 22 C C1' DBG . . . C 3 14.437 34.8 20.049 1 14.38 ? C1' DBG 167 A 1 
HETATM 23 N N9 DBG . . . C 3 14.625 34.07 18.792 1 12.62 ? N9 DBG 167 A 1 
HETATM 24 C C4 DBG . . . C 3 15.788 33.597 18.317 1 14.54 ? C4 DBG 167 A 1 
HETATM 25 N N3 DBG . . . C 3 16.99 33.779 18.872 1 14.92 ? N3 DBG 167 A 1 
HETATM 26 C C2 DBG . . . C 3 18.014 33.277 18.165 1 17.19 ? C2 DBG 167 A 1 
HETATM 27 N N2 DBG . . . C 3 19.283 33.528 18.53 1 15.09 ? N2 DBG 167 A 1 
HETATM 28 N N1 DBG . . . C 3 17.789 32.49 17.017 1 15.33 ? N1 DBG 167 A 1 
HETATM 29 C C6 DBG . . . C 3 16.577 32.456 16.338 1 15.62 ? C6 DBG 167 A 1 
HETATM 30 O O6 DBG . . . C 3 16.508 31.899 15.241 1 13.53 ? O6 DBG 167 A 1 
HETATM 31 C C5 DBG . . . C 3 15.505 32.984 17.135 1 12.64 ? C5 DBG 167 A 1 
HETATM 32 N N7 DBG . . . C 3 14.116 32.956 16.917 1 13.67 ? N7 DBG 167 A 1 
HETATM 33 C C8 DBG . . . C 3 13.669 33.54 17.964 1 13.69 ? C8 DBG 167 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           439 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#