data_1CLZ # _model_server_result.job_id BJ8Lk7T3ektsusRDkulz2g _model_server_result.datetime_utc '2024-11-07 20:48:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1clz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":236}' # _entry.id 1CLZ # _exptl.entry_id 1CLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.265 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL NONANOATE (ESTER)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CLZ _cell.length_a 69.4 _cell.length_b 84.9 _cell.length_c 86.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y+1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 69.4 42.45 -43.4 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 FUC GAL C1 O1 . O2 HO2 . sing 3 ? 3 4 1 FUC NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG Y 3 NAG 3 n C GAL 2 A 2 GAL Y 2 GAL 3 n C FUC 3 A 3 FUC Y 1 FUC 3 n C FUC 4 A 4 FUC Y 4 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 145 H CYS 142 1_555 B SG CYS 200 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 D C9 NON . H NON 236 1_555 C O1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 C O4 NAG . A NAG 1 1_555 C C1 GAL . A GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale3 C O3 NAG . A NAG 1 1_555 C C1 FUC . A FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale4 C O2 GAL . A GAL 2 1_555 C C1 FUC . A FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? # _chem_comp.formula 'C10 H20 O2' _chem_comp.formula_weight 172.265 _chem_comp.id NON _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL NONANOATE (ESTER)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NON sing 312 n n C1 O1 NON doub 313 n n C1 O2 NON sing 314 n n C2 C3 NON sing 315 n n C2 H21 NON sing 316 n n C2 H22 NON sing 317 n n C3 C4 NON sing 318 n n C3 H31 NON sing 319 n n C3 H32 NON sing 320 n n C4 C5 NON sing 321 n n C4 H41 NON sing 322 n n C4 H42 NON sing 323 n n C5 C6 NON sing 324 n n C5 H51 NON sing 325 n n C5 H52 NON sing 326 n n C6 C7 NON sing 327 n n C6 H61 NON sing 328 n n C6 H62 NON sing 329 n n C7 C8 NON sing 330 n n C7 H71 NON sing 331 n n C7 H72 NON sing 332 n n C8 C9 NON sing 333 n n C8 H81 NON sing 334 n n C8 H82 NON sing 335 n n C9 H91 NON sing 336 n n C9 H92 NON sing 337 n n C9 H93 NON sing 338 n n O2 CM NON sing 339 n n CM HM1 NON sing 340 n n CM HM2 NON sing 341 n n CM HM3 NON sing 342 n n # _atom_sites.entry_id 1CLZ _atom_sites.fract_transf_matrix[1][1] 0.014409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NON _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 236 _pdbx_nonpoly_scheme.auth_seq_num 5 _pdbx_nonpoly_scheme.pdb_mon_id NON _pdbx_nonpoly_scheme.auth_mon_id NON _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NON . . . D 4 42.286 74.635 -28.085 1 25.75 ? C1 NON 236 H 1 HETATM 2 C C2 NON . . . D 4 43.322 75.667 -27.67 1 24.03 ? C2 NON 236 H 1 HETATM 3 C C3 NON . . . D 4 42.701 76.913 -27.07 1 21.75 ? C3 NON 236 H 1 HETATM 4 C C4 NON . . . D 4 41.787 77.593 -28.064 1 19.92 ? C4 NON 236 H 1 HETATM 5 C C5 NON . . . D 4 40.928 78.631 -27.383 1 19.37 ? C5 NON 236 H 1 HETATM 6 C C6 NON . . . D 4 40 79.311 -28.362 1 17.38 ? C6 NON 236 H 1 HETATM 7 C C7 NON . . . D 4 38.962 80.118 -27.624 1 16.48 ? C7 NON 236 H 1 HETATM 8 C C8 NON . . . D 4 39.603 81.182 -26.756 1 16.13 ? C8 NON 236 H 1 HETATM 9 C C9 NON . . . D 4 38.607 81.767 -25.769 1 14.34 ? C9 NON 236 H 1 HETATM 10 O O1 NON . . . D 4 41.094 74.755 -27.933 1 26.59 ? O1 NON 236 H 1 HETATM 11 O O2 NON . . . D 4 42.848 73.542 -28.648 1 26.47 ? O2 NON 236 H 1 HETATM 12 C CM NON . . . D 4 42.253 73.013 -29.865 1 24.92 ? CM NON 236 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #