data_1CM1
#
_model_server_result.job_id            1QKSkKmrAiu-mv7ZKbgp-Q 
_model_server_result.datetime_utc      '2024-12-26 16:46:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cm1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    1CM1 
#
_exptl.entry_id    1CM1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1CM1 
_cell.length_a            38.751 
_cell.length_b            75.209 
_cell.length_c            120.073 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CM1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 150.418 120.073 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc4 A O THR 26 A THR 26 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.296 ? 
metalc ? metalc9 A OD2 ASP 58 A ASP 58 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc10 A OD1 ASN 60 A ASN 60 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc11 A O THR 62 A THR 62 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc12 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc13 A OE2 GLU 67 A GLU 67 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc14 A OD1 ASP 93 A ASP 93 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc15 A OD1 ASP 95 A ASP 95 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc16 A OD1 ASN 97 A ASN 97 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc17 A O TYR 99 A TYR 99 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc19 A OE1 GLU 104 A GLU 104 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc20 A OD1 ASP 129 A ASP 129 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc21 A OD1 ASP 131 A ASP 131 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc22 A OD1 ASP 133 A ASP 133 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc23 A OD2 ASP 133 A ASP 133 1_555 G CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc24 A OD2 ASP 133 A ASP 133 4_576 G CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? 
metalc ? metalc25 A O GLN 135 A GLN 135 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc26 A OE1 GLN 135 A GLN 135 1_555 G CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? 
metalc ? metalc27 A OE1 GLN 135 A GLN 135 4_576 G CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? 
metalc ? metalc28 A OE1 GLU 140 A GLU 140 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc29 A OE2 GLU 140 A GLU 140 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc30 C CA CA . A CA 401 1_555 H O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc31 D CA CA . A CA 402 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc32 E CA CA . A CA 403 1_555 H O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc33 F CA CA . A CA 404 1_555 H O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1CM1 
_atom_sites.fract_transf_matrix[1][1]    0.025806 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 401 401 CA CA . 
D 3 CA A 1 402 402 CA CA . 
E 3 CA A 1 403 403 CA CA . 
F 3 CA A 1 404 404 CA CA . 
G 3 CA A 1 600 600 CA CA . 
H 4 HOH A 1 502 502 HOH HOH . 
H 4 HOH A 2 503 503 HOH HOH . 
H 4 HOH A 3 504 504 HOH HOH . 
H 4 HOH A 4 505 505 HOH HOH . 
H 4 HOH A 5 506 506 HOH HOH . 
H 4 HOH A 6 507 507 HOH HOH . 
H 4 HOH A 7 508 508 HOH HOH . 
H 4 HOH A 8 509 509 HOH HOH . 
H 4 HOH A 9 510 510 HOH HOH . 
H 4 HOH A 10 511 511 HOH HOH . 
H 4 HOH A 11 512 512 HOH HOH . 
H 4 HOH A 12 513 513 HOH HOH . 
H 4 HOH A 13 514 514 HOH HOH . 
H 4 HOH A 14 515 515 HOH HOH . 
H 4 HOH A 15 516 516 HOH HOH . 
H 4 HOH A 16 517 517 HOH HOH . 
H 4 HOH A 17 518 518 HOH HOH . 
H 4 HOH A 18 519 519 HOH HOH . 
H 4 HOH A 19 520 520 HOH HOH . 
H 4 HOH A 20 521 521 HOH HOH . 
H 4 HOH A 21 522 522 HOH HOH . 
H 4 HOH A 22 523 523 HOH HOH . 
H 4 HOH A 23 524 524 HOH HOH . 
H 4 HOH A 24 525 525 HOH HOH . 
H 4 HOH A 25 527 527 HOH HOH . 
H 4 HOH A 26 528 528 HOH HOH . 
H 4 HOH A 27 529 529 HOH HOH . 
H 4 HOH A 28 530 530 HOH HOH . 
H 4 HOH A 29 532 532 HOH HOH . 
H 4 HOH A 30 533 533 HOH HOH . 
H 4 HOH A 31 534 534 HOH HOH . 
H 4 HOH A 32 535 535 HOH HOH . 
H 4 HOH A 33 536 536 HOH HOH . 
H 4 HOH A 34 537 537 HOH HOH . 
H 4 HOH A 35 538 538 HOH HOH . 
H 4 HOH A 36 539 539 HOH HOH . 
H 4 HOH A 37 540 540 HOH HOH . 
H 4 HOH A 38 541 541 HOH HOH . 
H 4 HOH A 39 542 542 HOH HOH . 
H 4 HOH A 40 543 543 HOH HOH . 
H 4 HOH A 41 544 544 HOH HOH . 
H 4 HOH A 42 545 545 HOH HOH . 
H 4 HOH A 43 546 546 HOH HOH . 
H 4 HOH A 44 547 547 HOH HOH . 
H 4 HOH A 45 548 548 HOH HOH . 
H 4 HOH A 46 549 549 HOH HOH . 
H 4 HOH A 47 550 550 HOH HOH . 
H 4 HOH A 48 551 551 HOH HOH . 
H 4 HOH A 49 552 552 HOH HOH . 
H 4 HOH A 50 553 553 HOH HOH . 
H 4 HOH A 51 554 554 HOH HOH . 
H 4 HOH A 52 556 556 HOH HOH . 
I 4 HOH B 1 501 501 HOH HOH . 
I 4 HOH B 2 526 526 HOH HOH . 
I 4 HOH B 3 531 531 HOH HOH . 
I 4 HOH B 4 555 555 HOH HOH . 
I 4 HOH B 5 557 557 HOH HOH . 
I 4 HOH B 6 558 558 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               27.592 
_atom_site.Cartn_y               73.607 
_atom_site.Cartn_z               66.023 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           771 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#