data_1CMK # _model_server_result.job_id RzkobtVrwgkTdHGih1FBzQ _model_server_result.datetime_utc '2024-12-26 18:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 1CMK # _exptl.entry_id 1CMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CMK _cell.length_a 171.52 _cell.length_b 171.52 _cell.length_c 171.52 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_555 -y+3/4,-x+3/4,-z+3/4 0 -1 0 -1 0 0 0 0 -1 128.64 128.64 128.64 5 'crystal symmetry operation' 19_555 -x+3/4,-z+3/4,-y+3/4 -1 0 0 0 0 -1 0 -1 0 128.64 128.64 128.64 6 'crystal symmetry operation' 24_555 -z+3/4,-y+3/4,-x+3/4 0 0 -1 0 -1 0 -1 0 0 128.64 128.64 128.64 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 MYR . E MYR 0 1_555 A N GLY 1 E GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 235 n n C1 O2 MYR sing 236 n n C1 C2 MYR sing 237 n n O2 HO2 MYR sing 238 n n C2 C3 MYR sing 239 n n C2 H21 MYR sing 240 n n C2 H22 MYR sing 241 n n C3 C4 MYR sing 242 n n C3 H31 MYR sing 243 n n C3 H32 MYR sing 244 n n C4 C5 MYR sing 245 n n C4 H41 MYR sing 246 n n C4 H42 MYR sing 247 n n C5 C6 MYR sing 248 n n C5 H51 MYR sing 249 n n C5 H52 MYR sing 250 n n C6 C7 MYR sing 251 n n C6 H61 MYR sing 252 n n C6 H62 MYR sing 253 n n C7 C8 MYR sing 254 n n C7 H71 MYR sing 255 n n C7 H72 MYR sing 256 n n C8 C9 MYR sing 257 n n C8 H81 MYR sing 258 n n C8 H82 MYR sing 259 n n C9 C10 MYR sing 260 n n C9 H91 MYR sing 261 n n C9 H92 MYR sing 262 n n C10 C11 MYR sing 263 n n C10 H101 MYR sing 264 n n C10 H102 MYR sing 265 n n C11 C12 MYR sing 266 n n C11 H111 MYR sing 267 n n C11 H112 MYR sing 268 n n C12 C13 MYR sing 269 n n C12 H121 MYR sing 270 n n C12 H122 MYR sing 271 n n C13 C14 MYR sing 272 n n C13 H131 MYR sing 273 n n C13 H132 MYR sing 274 n n C14 H141 MYR sing 275 n n C14 H142 MYR sing 276 n n C14 H143 MYR sing 277 n n # _atom_sites.entry_id 1CMK _atom_sites.fract_transf_matrix[1][1] 0.00583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR E 1 0 0 MYR MYR . D 4 IOD I 1 384 384 IOD I . E 4 IOD I 1 385 385 IOD I . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 48.697 34.647 40.903 1 17 ? C1 MYR 0 E 1 HETATM 2 O O1 MYR . . . C 3 48.354 35.592 41.176 1 17 ? O1 MYR 0 E 1 HETATM 3 C C2 MYR . . . C 3 48.822 34.966 39.444 1 17 ? C2 MYR 0 E 1 HETATM 4 C C3 MYR . . . C 3 49.978 34.24 38.809 1 17 ? C3 MYR 0 E 1 HETATM 5 C C4 MYR . . . C 3 50.796 35.261 37.954 1 17 ? C4 MYR 0 E 1 HETATM 6 C C5 MYR . . . C 3 52.214 35.189 38.56 1 17 ? C5 MYR 0 E 1 HETATM 7 C C6 MYR . . . C 3 53.335 35.306 37.529 1 17 ? C6 MYR 0 E 1 HETATM 8 C C7 MYR . . . C 3 54.28 34.136 37.72 1 17 ? C7 MYR 0 E 1 HETATM 9 C C8 MYR . . . C 3 55.591 34.623 38.232 1 17 ? C8 MYR 0 E 1 HETATM 10 C C9 MYR . . . C 3 56.187 33.464 39.002 1 17 ? C9 MYR 0 E 1 HETATM 11 C C10 MYR . . . C 3 57.672 33.678 39.153 1 17 ? C10 MYR 0 E 1 HETATM 12 C C11 MYR . . . C 3 58.011 33.397 40.567 1 17 ? C11 MYR 0 E 1 HETATM 13 C C12 MYR . . . C 3 59.491 33.598 40.82 1 17 ? C12 MYR 0 E 1 HETATM 14 C C13 MYR . . . C 3 59.993 33.003 42.128 1 17 ? C13 MYR 0 E 1 HETATM 15 C C14 MYR . . . C 3 61.289 32.173 42.044 1 17 ? C14 MYR 0 E 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #