data_1COT # _model_server_result.job_id yGonJa53DSt3FzrswQETqw _model_server_result.datetime_utc '2025-03-04 08:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 1COT # _exptl.entry_id 1COT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1COT _cell.length_a 31.6 _cell.length_b 42.1 _cell.length_c 81.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1COT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 15 A CYS 15 1_555 B CAB HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 B FE HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc2 A SD MET 100 A MET 100 1_555 B FE HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1COT _atom_sites.fract_transf_matrix[1][1] 0.031646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 130 125 HEC HEM . C 3 HOH A 1 131 1 HOH HOH . C 3 HOH A 2 132 2 HOH HOH . C 3 HOH A 3 133 3 HOH HOH . C 3 HOH A 4 134 4 HOH HOH . C 3 HOH A 5 135 5 HOH HOH . C 3 HOH A 6 136 6 HOH HOH . C 3 HOH A 7 137 7 HOH HOH . C 3 HOH A 8 138 8 HOH HOH . C 3 HOH A 9 139 9 HOH HOH . C 3 HOH A 10 140 10 HOH HOH . C 3 HOH A 11 141 11 HOH HOH . C 3 HOH A 12 142 12 HOH HOH . C 3 HOH A 13 143 13 HOH HOH . C 3 HOH A 14 144 14 HOH HOH . C 3 HOH A 15 145 15 HOH HOH . C 3 HOH A 16 146 16 HOH HOH . C 3 HOH A 17 147 17 HOH HOH . C 3 HOH A 18 148 18 HOH HOH . C 3 HOH A 19 149 19 HOH HOH . C 3 HOH A 20 150 20 HOH HOH . C 3 HOH A 21 151 21 HOH HOH . C 3 HOH A 22 152 22 HOH HOH . C 3 HOH A 23 153 23 HOH HOH . C 3 HOH A 24 154 24 HOH HOH . C 3 HOH A 25 155 25 HOH HOH . C 3 HOH A 26 156 26 HOH HOH . C 3 HOH A 27 157 27 HOH HOH . C 3 HOH A 28 158 28 HOH HOH . C 3 HOH A 29 159 29 HOH HOH . C 3 HOH A 30 160 30 HOH HOH . C 3 HOH A 31 161 31 HOH HOH . C 3 HOH A 32 162 32 HOH HOH . C 3 HOH A 33 163 33 HOH HOH . C 3 HOH A 34 164 34 HOH HOH . C 3 HOH A 35 165 35 HOH HOH . C 3 HOH A 36 166 36 HOH HOH . C 3 HOH A 37 167 37 HOH HOH . C 3 HOH A 38 168 38 HOH HOH . C 3 HOH A 39 169 39 HOH HOH . C 3 HOH A 40 170 40 HOH HOH . C 3 HOH A 41 171 41 HOH HOH . C 3 HOH A 42 172 42 HOH HOH . C 3 HOH A 43 173 43 HOH HOH . C 3 HOH A 44 174 44 HOH HOH . C 3 HOH A 45 175 45 HOH HOH . C 3 HOH A 46 176 46 HOH HOH . C 3 HOH A 47 177 47 HOH HOH . C 3 HOH A 48 178 48 HOH HOH . C 3 HOH A 49 179 49 HOH HOH . C 3 HOH A 50 180 50 HOH HOH . C 3 HOH A 51 181 51 HOH HOH . C 3 HOH A 52 182 52 HOH HOH . C 3 HOH A 53 183 53 HOH HOH . C 3 HOH A 54 184 54 HOH HOH . C 3 HOH A 55 185 55 HOH HOH . C 3 HOH A 56 186 56 HOH HOH . C 3 HOH A 57 187 57 HOH HOH . C 3 HOH A 58 188 58 HOH HOH . C 3 HOH A 59 189 59 HOH HOH . C 3 HOH A 60 190 60 HOH HOH . C 3 HOH A 61 191 61 HOH HOH . C 3 HOH A 62 192 62 HOH HOH . C 3 HOH A 63 193 63 HOH HOH . C 3 HOH A 64 194 64 HOH HOH . C 3 HOH A 65 195 65 HOH HOH . C 3 HOH A 66 196 66 HOH HOH . C 3 HOH A 67 197 67 HOH HOH . C 3 HOH A 68 198 68 HOH HOH . C 3 HOH A 69 199 69 HOH HOH . C 3 HOH A 70 200 70 HOH HOH . C 3 HOH A 71 201 71 HOH HOH . C 3 HOH A 72 202 72 HOH HOH . C 3 HOH A 73 203 73 HOH HOH . C 3 HOH A 74 204 74 HOH HOH . C 3 HOH A 75 205 75 HOH HOH . C 3 HOH A 76 206 76 HOH HOH . C 3 HOH A 77 207 77 HOH HOH . C 3 HOH A 78 208 78 HOH HOH . C 3 HOH A 79 209 79 HOH HOH . C 3 HOH A 80 210 80 HOH HOH . C 3 HOH A 81 211 81 HOH HOH . C 3 HOH A 82 212 82 HOH HOH . C 3 HOH A 83 213 83 HOH HOH . C 3 HOH A 84 214 84 HOH HOH . C 3 HOH A 85 215 85 HOH HOH . C 3 HOH A 86 216 86 HOH HOH . C 3 HOH A 87 217 87 HOH HOH . C 3 HOH A 88 218 88 HOH HOH . C 3 HOH A 89 219 89 HOH HOH . C 3 HOH A 90 220 90 HOH HOH . C 3 HOH A 91 221 91 HOH HOH . C 3 HOH A 92 222 92 HOH HOH . C 3 HOH A 93 223 93 HOH HOH . C 3 HOH A 94 224 94 HOH HOH . C 3 HOH A 95 225 95 HOH HOH . C 3 HOH A 96 226 96 HOH HOH . C 3 HOH A 97 227 97 HOH HOH . C 3 HOH A 98 228 98 HOH HOH . C 3 HOH A 99 229 99 HOH HOH . C 3 HOH A 100 230 100 HOH HOH . C 3 HOH A 101 231 101 HOH HOH . C 3 HOH A 102 232 102 HOH HOH . C 3 HOH A 103 233 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 8.908 12.447 33.433 1 11.12 ? FE HEC 130 A 1 HETATM 2 C CHA HEC . . . B 2 9.897 15.56 32.643 1 9.37 ? CHA HEC 130 A 1 HETATM 3 C CHB HEC . . . B 2 11.668 11.175 31.995 1 14.03 ? CHB HEC 130 A 1 HETATM 4 C CHC HEC . . . B 2 7.91 9.302 34.239 1 9.34 ? CHC HEC 130 A 1 HETATM 5 C CHD HEC . . . B 2 6.05 13.661 34.776 1 11.8 ? CHD HEC 130 A 1 HETATM 6 N NA HEC . . . B 2 10.481 13.193 32.517 1 8.46 ? NA HEC 130 A 1 HETATM 7 C C1A HEC . . . B 2 10.7 14.545 32.278 1 8.8 ? C1A HEC 130 A 1 HETATM 8 C C2A HEC . . . B 2 11.95 14.702 31.569 1 10.51 ? C2A HEC 130 A 1 HETATM 9 C C3A HEC . . . B 2 12.471 13.477 31.375 1 12.26 ? C3A HEC 130 A 1 HETATM 10 C C4A HEC . . . B 2 11.555 12.549 31.959 1 9.42 ? C4A HEC 130 A 1 HETATM 11 C CMA HEC . . . B 2 13.766 13.107 30.691 1 10.82 ? CMA HEC 130 A 1 HETATM 12 C CAA HEC . . . B 2 12.534 16.022 31.144 1 7.76 ? CAA HEC 130 A 1 HETATM 13 C CBA HEC . . . B 2 12.071 16.33 29.712 1 14.97 ? CBA HEC 130 A 1 HETATM 14 C CGA HEC . . . B 2 12.649 17.589 29.059 1 10.37 ? CGA HEC 130 A 1 HETATM 15 O O1A HEC . . . B 2 11.963 17.941 28.139 1 14.3 ? O1A HEC 130 A 1 HETATM 16 O O2A HEC . . . B 2 13.653 18.174 29.385 1 11.72 ? O2A HEC 130 A 1 HETATM 17 N NB HEC . . . B 2 9.621 10.627 33.206 1 10.52 ? NB HEC 130 A 1 HETATM 18 C C1B HEC . . . B 2 10.759 10.327 32.524 1 9.51 ? C1B HEC 130 A 1 HETATM 19 C C2B HEC . . . B 2 10.916 8.905 32.524 1 9.38 ? C2B HEC 130 A 1 HETATM 20 C C3B HEC . . . B 2 9.87 8.404 33.162 1 12.95 ? C3B HEC 130 A 1 HETATM 21 C C4B HEC . . . B 2 9.076 9.473 33.589 1 11.42 ? C4B HEC 130 A 1 HETATM 22 C CMB HEC . . . B 2 12.129 8.192 31.898 1 9.42 ? CMB HEC 130 A 1 HETATM 23 C CAB HEC . . . B 2 9.663 6.984 33.507 1 15.18 ? CAB HEC 130 A 1 HETATM 24 C CBB HEC . . . B 2 10.678 6.201 34.29 1 10.36 ? CBB HEC 130 A 1 HETATM 25 N NC HEC . . . B 2 7.368 11.642 34.321 1 10.15 ? NC HEC 130 A 1 HETATM 26 C C1C HEC . . . B 2 7.092 10.323 34.565 1 10.49 ? C1C HEC 130 A 1 HETATM 27 C C2C HEC . . . B 2 5.807 10.18 35.216 1 10.71 ? C2C HEC 130 A 1 HETATM 28 C C3C HEC . . . B 2 5.285 11.419 35.349 1 10.48 ? C3C HEC 130 A 1 HETATM 29 C C4C HEC . . . B 2 6.245 12.314 34.781 1 8.19 ? C4C HEC 130 A 1 HETATM 30 C CMC HEC . . . B 2 5.191 8.857 35.657 1 13.4 ? CMC HEC 130 A 1 HETATM 31 C CAC HEC . . . B 2 3.97 11.854 35.938 1 12.59 ? CAC HEC 130 A 1 HETATM 32 C CBC HEC . . . B 2 3.215 11.248 37.078 1 9.65 ? CBC HEC 130 A 1 HETATM 33 N ND HEC . . . B 2 8.138 14.259 33.699 1 11.41 ? ND HEC 130 A 1 HETATM 34 C C1D HEC . . . B 2 6.924 14.547 34.268 1 8.97 ? C1D HEC 130 A 1 HETATM 35 C C2D HEC . . . B 2 6.724 15.984 34.244 1 8.71 ? C2D HEC 130 A 1 HETATM 36 C C3D HEC . . . B 2 7.809 16.486 33.624 1 8.09 ? C3D HEC 130 A 1 HETATM 37 C C4D HEC . . . B 2 8.693 15.424 33.303 1 13.02 ? C4D HEC 130 A 1 HETATM 38 C CMD HEC . . . B 2 5.534 16.728 34.807 1 11.55 ? CMD HEC 130 A 1 HETATM 39 C CAD HEC . . . B 2 8.128 17.92 33.447 1 11.73 ? CAD HEC 130 A 1 HETATM 40 C CBD HEC . . . B 2 9.026 18.213 34.689 1 14.11 ? CBD HEC 130 A 1 HETATM 41 C CGD HEC . . . B 2 9.206 19.627 35.096 1 21.69 ? CGD HEC 130 A 1 HETATM 42 O O1D HEC . . . B 2 8.805 20.577 34.467 1 12.72 ? O1D HEC 130 A 1 HETATM 43 O O2D HEC . . . B 2 9.847 19.782 36.167 1 13.49 ? O2D HEC 130 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #