data_1COV # _model_server_result.job_id Wm2TDL4DfaAGNr-woBQA-w _model_server_result.datetime_utc '2024-12-24 14:07:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":282}' # _entry.id 1COV # _exptl.entry_id 1COV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.7 _cell.angle_gamma 90 _cell.entry_id 1COV _cell.length_a 574.62 _cell.length_b 302.07 _cell.length_c 521.61 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1COV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 480-meric 480 'crystal asymmetric unit' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P A,B,C,D,E,F 6 (X0,X1)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X1 'transform to crystal frame' ? ? 0.999734 -0.000415 -0.023209 0.00041 0.999997 -0.000488 0.023198 0.000486 0.999732 210.61915 0.10145 249.81899 P 'transform to point frame' ? ? 0.527091 0.80604 0.269203 -0.359305 0.498452 -0.788948 -0.770111 0.319122 0.55235 -11.84033 84.0685 -98.68279 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.801222 -0.363523 0.475281 -0.258755 0.505699 0.822995 -0.539523 -0.78238 0.311113 -67.12188 -112.73127 63.41869 3 'point symmetry operation' ? ? 0.479595 -0.846946 0.229493 -0.782198 -0.2941 0.549251 -0.397686 -0.442928 -0.803529 -49.77931 -100.17801 207.56159 4 'point symmetry operation' ? ? 0.479597 -0.782195 -0.397692 -0.846948 -0.294102 -0.442927 0.229498 0.549245 -0.803528 28.06085 20.3116 233.22812 5 'point symmetry operation' ? ? 0.801225 -0.258754 -0.539527 -0.363523 0.505695 -0.782383 0.475282 0.822989 0.311114 58.82616 82.22501 104.948 6 'point symmetry operation' ? ? 0.186144 -0.49152 -0.850743 -0.491521 -0.796321 0.352535 -0.850737 0.352533 -0.389823 72.89507 -64.72146 139.0267 7 'point symmetry operation' ? ? 0.735322 0.349375 -0.580725 -0.377966 -0.499837 -0.779301 -0.56253 0.792528 -0.235485 61.85746 80.39797 131.66626 8 'point symmetry operation' ? ? 0.812068 0.36372 0.456347 0.246952 0.494342 -0.833453 -0.528732 0.789512 0.311624 -63.71303 112.69279 65.14755 9 'point symmetry operation' ? ? 0.310322 -0.468309 0.827276 0.519617 0.812293 0.264914 -0.796051 0.347653 0.495419 -130.28225 -12.46734 31.39717 10 'point symmetry operation' ? ? -0.07652 -0.996877 0.019449 0.063216 0.01462 0.997896 -0.995061 0.077585 0.0619 -45.8538 -122.11537 77.057 11 'point symmetry operation' ? ? -0.741797 -0.358197 0.566953 -0.358197 -0.503086 -0.786514 0.566948 -0.786508 0.244883 -139.51178 82.07164 115.38917 12 'point symmetry operation' ? ? -0.807543 -0.355052 -0.47097 0.267524 0.491156 -0.828976 0.525644 -0.795427 -0.301647 -13.38566 112.9483 181.52872 13 'point symmetry operation' ? ? -0.30105 0.482488 -0.82254 0.534509 0.7997 0.273463 0.789724 -0.357328 -0.49865 50.97534 -12.94954 216.78593 14 'point symmetry operation' ? ? 0.077725 0.996972 -0.001901 0.073794 -0.00385 0.997269 0.994238 -0.07765 -0.073875 -35.37351 -121.63535 172.43652 15 'point symmetry operation' ? ? -0.194671 0.4774 0.856853 -0.477928 -0.809016 0.342167 0.856555 -0.342897 0.385653 -153.10102 -62.90903 109.76988 16 'point symmetry operation' ? ? -0.444347 0.849717 0.28379 0.849717 0.299407 0.433979 0.283788 0.433976 -0.85506 -91.58057 -20.82514 241.66609 17 'point symmetry operation' ? ? -0.729001 0.3692 0.576414 0.369197 -0.497018 0.785281 0.576409 0.78528 0.226019 -139.5472 -84.08995 119.46829 18 'point symmetry operation' ? ? -0.990613 0.000738 0.136699 0.000738 -0.999942 0.01074 0.136694 0.010745 0.990555 -95.68027 -3.04019 6.58689 19 'point symmetry operation' ? ? -0.867644 0.253533 -0.427683 0.253537 -0.514341 -0.819256 -0.427686 -0.819248 0.381985 -20.60237 110.31613 59.02015 20 'point symmetry operation' ? ? -0.530033 0.778231 -0.336776 0.778235 0.288701 -0.55768 -0.336776 -0.557677 -0.758668 -18.06862 99.32443 204.30708 21 'point symmetry operation' ? ? -0.318604 -0.505274 0.801992 -0.472673 0.818071 0.327632 -0.821626 -0.274699 -0.499467 -152.05224 -59.48508 153.23128 22 'point symmetry operation' ? ? -0.557223 -0.76716 -0.317755 -0.767162 0.329193 0.550546 -0.317751 0.550538 -0.771969 -22.8455 -99.20251 207.67195 23 'point symmetry operation' ? ? -0.076517 0.063216 -0.995064 -0.99688 0.014617 0.077589 0.019452 0.99789 0.0619 80.88769 -49.90455 117.97983 24 'point symmetry operation' ? ? 0.459196 0.838302 -0.293917 -0.844365 0.309076 -0.437629 -0.27602 0.449132 0.849762 15.79158 20.2807 8.10638 25 'point symmetry operation' ? ? 0.309578 0.486956 0.816724 -0.520388 0.805638 -0.283094 -0.795835 -0.337372 0.502818 -128.17321 14.35961 29.89297 26 'point symmetry operation' ? ? -0.493237 0.841689 -0.219712 -0.768813 -0.303618 0.562804 0.406995 0.446516 0.796855 -31.07651 -101.33773 41.67844 27 'point symmetry operation' ? ? -0.494444 0.776843 0.389925 -0.841073 -0.314385 -0.440182 -0.219367 -0.545593 0.808829 -106.78801 20.1859 14.55937 28 'point symmetry operation' ? ? -0.807545 0.267522 0.525649 -0.355049 0.491155 -0.795429 -0.470969 -0.828972 -0.301644 -136.446 84.16549 142.08389 29 'point symmetry operation' ? ? -0.999845 0.017589 -0.000106 0.017591 0.999773 -0.011997 -0.000106 -0.012002 -0.999928 -79.06415 2.18343 248.01745 30 'point symmetry operation' ? ? -0.805592 0.372444 -0.460764 -0.238129 0.508577 0.827437 0.542506 0.776293 -0.321018 -13.94223 -112.46387 185.96347 31 'point symmetry operation' ? ? 0.872015 -0.262454 0.413166 0.243348 -0.499935 -0.831176 0.424703 0.825336 -0.372079 -56.53081 111.40405 187.67966 32 'point symmetry operation' ? ? 0.543676 -0.772973 0.326994 0.772776 0.309016 -0.554375 0.327467 0.55409 0.765342 -59.27284 98.71635 42.53484 33 'point symmetry operation' ? ? 0.459195 -0.844365 -0.276023 0.838304 0.30908 0.449131 -0.29392 -0.437628 0.84976 12.11044 -23.14732 6.62838 34 'point symmetry operation' ? ? 0.735321 -0.377968 -0.562536 0.349375 -0.499832 0.792531 -0.580722 -0.779297 -0.235489 58.96976 -85.77551 129.58178 35 'point symmetry operation' ? ? 0.990458 -0.018327 -0.136594 -0.018328 -0.999831 0.001258 -0.136588 0.001258 -0.990627 16.54714 -2.61819 241.47762 36 'point symmetry operation' ? ? -0.060174 -0.073961 -0.995446 0.998138 -0.014518 -0.05926 -0.010072 -0.997153 0.074692 81.46228 45.94379 113.49258 37 'point symmetry operation' ? ? 0.507992 0.76329 -0.399164 0.835459 -0.323824 0.444011 0.20965 -0.559035 -0.802202 30.70907 -23.1747 231.31579 38 'point symmetry operation' ? ? 0.424867 0.513627 0.745437 0.513625 -0.814852 0.268709 0.745436 0.26871 -0.610016 -114.74941 -14.58858 229.38986 39 'point symmetry operation' ? ? -0.194672 -0.477924 0.856559 0.4774 -0.809017 -0.342904 0.856848 0.342168 0.385655 -153.89448 59.83643 110.37636 40 'point symmetry operation' ? ? -0.494443 -0.841073 -0.219366 0.776845 -0.314384 -0.545601 0.389918 -0.440179 0.808827 -32.62898 97.24749 38.7479 41 'point symmetry operation' ? ? -0.318599 -0.472674 -0.82163 -0.505276 0.818069 -0.274695 0.801991 0.327626 -0.49947 49.33865 13.92647 217.96781 42 'point symmetry operation' ? ? 0.310327 0.519614 -0.796052 -0.468313 0.812293 0.347658 0.827274 0.264914 0.495414 71.90209 -61.80125 95.52722 43 'point symmetry operation' ? ? 0.543677 0.772773 0.327471 -0.772977 0.309018 0.554094 0.326994 -0.554369 0.765339 -57.98901 -99.88998 41.55354 44 'point symmetry operation' ? ? 0.058969 -0.063055 0.996268 -0.998233 0.003753 0.059325 -0.007478 -0.998 -0.062722 -160.82956 -47.70238 130.63655 45 'point symmetry operation' ? ? -0.473947 -0.832783 0.286084 -0.832784 0.318364 -0.452895 0.286086 -0.452897 -0.844417 -94.49742 22.64006 239.66657 46 'point symmetry operation' ? ? 0.872015 0.243347 0.424702 -0.262459 -0.499931 0.825341 0.413168 -0.83117 -0.372083 -57.52205 -114.04227 185.7849 47 'point symmetry operation' ? ? 0.406574 -0.526215 0.746855 -0.526219 -0.803136 -0.279409 0.746856 -0.279408 -0.603438 -116.55212 12.27438 228.15409 48 'point symmetry operation' ? ? 0.058971 -0.998231 -0.00748 -0.063055 0.003751 -0.998006 0.996265 0.059322 -0.062722 -37.1566 120.41391 171.25241 49 'point symmetry operation' ? ? 0.309581 -0.52039 -0.795838 0.486956 0.805639 -0.337374 0.816719 -0.283094 0.502814 70.94261 60.93116 93.71605 50 'point symmetry operation' ? ? 0.81207 0.246948 -0.528735 0.363718 0.494346 0.789517 0.456346 -0.833448 0.311618 58.35607 -83.97073 102.69762 51 'point symmetry operation' ? ? -0.060176 0.998136 -0.010069 -0.073956 -0.014521 -0.997159 -0.995443 -0.059257 0.074697 -39.81337 119.86185 75.33603 52 'point symmetry operation' ? ? -0.301054 0.53451 0.789728 0.482493 0.799699 -0.357329 -0.822538 0.273459 -0.498644 -148.93394 63.22436 153.56933 53 'point symmetry operation' ? ? -0.805595 -0.238126 0.542508 0.372445 0.508577 0.776298 -0.460764 0.827429 -0.321016 -138.89902 -81.97384 146.32892 54 'point symmetry operation' ? ? -0.87654 -0.252015 -0.41008 -0.252017 -0.485566 0.837088 -0.41008 0.837085 0.362106 -23.57654 -115.07377 63.62079 55 'point symmetry operation' ? ? -0.415845 0.512037 -0.751591 -0.527908 -0.808858 -0.258968 -0.74053 0.289083 0.606669 37.66176 9.66754 19.74477 56 'point symmetry operation' ? ? -0.49324 -0.768809 0.406997 0.84169 -0.303617 0.446513 -0.219716 0.562801 0.796857 -110.20051 -23.22101 16.99322 57 'point symmetry operation' ? ? -0.415846 -0.527909 -0.740531 0.512039 -0.808856 0.28908 -0.751592 -0.258965 0.606668 35.38669 -17.17246 18.83132 58 'point symmetry operation' ? ? 0.202948 0.463583 -0.862498 0.463587 -0.821346 -0.332386 -0.862495 -0.332382 -0.381602 75.84735 57.97494 136.9471 59 'point symmetry operation' ? ? 0.50799 0.835459 0.20965 0.763294 -0.323827 -0.559039 -0.399161 0.444009 -0.802197 -44.73379 98.37003 208.10857 60 'point symmetry operation' ? ? 0.077722 0.073799 0.994242 0.996974 -0.003852 -0.077653 -0.001902 0.997263 -0.07387 -159.71768 48.18817 133.973 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F C1 MYR . 4 MYR 1 1_555 D N GLY 1 4 GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale2 F O1 MYR . 4 MYR 1 1_555 D N GLY 1 4 GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1COV _atom_sites.fract_transf_matrix[1][1] 0.00174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000555 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM 1 1 282 1 PLM PLM . F 6 MYR 4 1 1 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 -129.779 90.018 155.048 1 0 ? C1 PLM 282 1 1 HETATM 2 O O1 PLM . . . E 5 -130.418 90.395 156.081 1 0 ? O1 PLM 282 1 1 HETATM 3 O O2 PLM . . . E 5 -128.55 90.189 154.958 1 0 ? O2 PLM 282 1 1 HETATM 4 C C2 PLM . . . E 5 -130.548 89.274 153.99 1 0 ? C2 PLM 282 1 1 HETATM 5 C C3 PLM . . . E 5 -131.473 88.018 154.277 1 0 ? C3 PLM 282 1 1 HETATM 6 C C4 PLM . . . E 5 -131.342 87.011 153.107 1 0 ? C4 PLM 282 1 1 HETATM 7 C C5 PLM . . . E 5 -132.241 85.845 152.725 1 0 ? C5 PLM 282 1 1 HETATM 8 C C6 PLM . . . E 5 -132.175 85.859 151.207 1 0 ? C6 PLM 282 1 1 HETATM 9 C C7 PLM . . . E 5 -132.086 86.801 149.968 1 0 ? C7 PLM 282 1 1 HETATM 10 C C8 PLM . . . E 5 -133.13 86.294 148.899 1 0 ? C8 PLM 282 1 1 HETATM 11 C C9 PLM . . . E 5 -133.12 87.044 147.58 1 0 ? C9 PLM 282 1 1 HETATM 12 C CA PLM . . . E 5 -134.335 86.73 146.724 1 0 ? CA PLM 282 1 1 HETATM 13 C CB PLM . . . E 5 -134.111 86.77 145.222 1 0 ? CB PLM 282 1 1 HETATM 14 C CC PLM . . . E 5 -135.308 86.073 144.52 1 0 ? CC PLM 282 1 1 HETATM 15 C CD PLM . . . E 5 -135.009 86.207 143.014 1 0 ? CD PLM 282 1 1 HETATM 16 C CE PLM . . . E 5 -136.326 86.169 142.218 1 0 ? CE PLM 282 1 1 HETATM 17 C CF PLM . . . E 5 -135.997 86.143 140.72 1 0 ? CF PLM 282 1 1 HETATM 18 C CG PLM . . . E 5 -137.367 86.153 140.024 1 0 ? CG PLM 282 1 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 18 #