data_1COZ # _model_server_result.job_id b5CAv3I1buxdOguZzd74vg _model_server_result.datetime_utc '2024-10-19 06:43:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1coz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":630}' # _entry.id 1COZ # _exptl.entry_id 1COZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.1 _cell.angle_gamma 90 _cell.entry_id 1COZ _cell.length_a 44.5 _cell.length_b 61.4 _cell.length_c 56.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1COZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 1COZ _atom_sites.fract_transf_matrix[1][1] 0.022472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009585 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CTP A 1 130 130 CTP CTP . D 2 CTP B 1 630 630 CTP CTP . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1008 1008 HOH HOH . E 3 HOH A 4 1009 1009 HOH HOH . E 3 HOH A 5 1011 1011 HOH HOH . E 3 HOH A 6 1013 1013 HOH HOH . E 3 HOH A 7 1016 1016 HOH HOH . E 3 HOH A 8 1017 1017 HOH HOH . E 3 HOH A 9 1018 1018 HOH HOH . E 3 HOH A 10 1024 1024 HOH HOH . E 3 HOH A 11 1025 1025 HOH HOH . E 3 HOH A 12 1026 1026 HOH HOH . E 3 HOH A 13 1028 1028 HOH HOH . E 3 HOH A 14 1029 1029 HOH HOH . E 3 HOH A 15 1030 1030 HOH HOH . E 3 HOH A 16 1031 1031 HOH HOH . E 3 HOH A 17 1033 1033 HOH HOH . E 3 HOH A 18 1034 1034 HOH HOH . E 3 HOH A 19 1036 1036 HOH HOH . E 3 HOH A 20 1038 1038 HOH HOH . E 3 HOH A 21 1041 1041 HOH HOH . E 3 HOH A 22 1042 1042 HOH HOH . E 3 HOH A 23 1043 1043 HOH HOH . E 3 HOH A 24 1045 1045 HOH HOH . E 3 HOH A 25 1046 1046 HOH HOH . E 3 HOH A 26 1047 1047 HOH HOH . E 3 HOH A 27 1048 1048 HOH HOH . E 3 HOH A 28 1052 1052 HOH HOH . E 3 HOH A 29 1053 1053 HOH HOH . E 3 HOH A 30 1055 1055 HOH HOH . E 3 HOH A 31 1056 1056 HOH HOH . E 3 HOH A 32 1057 1057 HOH HOH . E 3 HOH A 33 1059 1059 HOH HOH . E 3 HOH A 34 1061 1061 HOH HOH . E 3 HOH A 35 1064 1064 HOH HOH . E 3 HOH A 36 1065 1065 HOH HOH . E 3 HOH A 37 1066 1066 HOH HOH . E 3 HOH A 38 1068 1068 HOH HOH . E 3 HOH A 39 1069 1069 HOH HOH . E 3 HOH A 40 1070 1070 HOH HOH . E 3 HOH A 41 1071 1071 HOH HOH . E 3 HOH A 42 1072 1072 HOH HOH . E 3 HOH A 43 1073 1073 HOH HOH . E 3 HOH A 44 1081 1081 HOH HOH . E 3 HOH A 45 1083 1083 HOH HOH . E 3 HOH A 46 1086 1086 HOH HOH . E 3 HOH A 47 1088 1088 HOH HOH . E 3 HOH A 48 1090 1090 HOH HOH . E 3 HOH A 49 1092 1092 HOH HOH . E 3 HOH A 50 1093 1093 HOH HOH . E 3 HOH A 51 1094 1094 HOH HOH . E 3 HOH A 52 1095 1095 HOH HOH . E 3 HOH A 53 1099 1099 HOH HOH . E 3 HOH A 54 1107 1107 HOH HOH . E 3 HOH A 55 1109 1109 HOH HOH . E 3 HOH A 56 1112 1112 HOH HOH . E 3 HOH A 57 1113 1113 HOH HOH . F 3 HOH B 1 1003 1003 HOH HOH . F 3 HOH B 2 1004 1004 HOH HOH . F 3 HOH B 3 1005 1005 HOH HOH . F 3 HOH B 4 1006 1006 HOH HOH . F 3 HOH B 5 1007 1007 HOH HOH . F 3 HOH B 6 1010 1010 HOH HOH . F 3 HOH B 7 1012 1012 HOH HOH . F 3 HOH B 8 1014 1014 HOH HOH . F 3 HOH B 9 1015 1015 HOH HOH . F 3 HOH B 10 1019 1019 HOH HOH . F 3 HOH B 11 1020 1020 HOH HOH . F 3 HOH B 12 1021 1021 HOH HOH . F 3 HOH B 13 1022 1022 HOH HOH . F 3 HOH B 14 1027 1027 HOH HOH . F 3 HOH B 15 1032 1032 HOH HOH . F 3 HOH B 16 1037 1037 HOH HOH . F 3 HOH B 17 1040 1040 HOH HOH . F 3 HOH B 18 1044 1044 HOH HOH . F 3 HOH B 19 1050 1050 HOH HOH . F 3 HOH B 20 1051 1051 HOH HOH . F 3 HOH B 21 1054 1054 HOH HOH . F 3 HOH B 22 1058 1058 HOH HOH . F 3 HOH B 23 1060 1060 HOH HOH . F 3 HOH B 24 1062 1062 HOH HOH . F 3 HOH B 25 1063 1063 HOH HOH . F 3 HOH B 26 1067 1067 HOH HOH . F 3 HOH B 27 1074 1074 HOH HOH . F 3 HOH B 28 1075 1075 HOH HOH . F 3 HOH B 29 1076 1076 HOH HOH . F 3 HOH B 30 1077 1077 HOH HOH . F 3 HOH B 31 1078 1078 HOH HOH . F 3 HOH B 32 1079 1079 HOH HOH . F 3 HOH B 33 1080 1080 HOH HOH . F 3 HOH B 34 1082 1082 HOH HOH . F 3 HOH B 35 1085 1085 HOH HOH . F 3 HOH B 36 1087 1087 HOH HOH . F 3 HOH B 37 1089 1089 HOH HOH . F 3 HOH B 38 1091 1091 HOH HOH . F 3 HOH B 39 1097 1097 HOH HOH . F 3 HOH B 40 1098 1098 HOH HOH . F 3 HOH B 41 1101 1101 HOH HOH . F 3 HOH B 42 1102 1102 HOH HOH . F 3 HOH B 43 1103 1103 HOH HOH . F 3 HOH B 44 1104 1104 HOH HOH . F 3 HOH B 45 1105 1105 HOH HOH . F 3 HOH B 46 1106 1106 HOH HOH . F 3 HOH B 47 1108 1108 HOH HOH . F 3 HOH B 48 1110 1110 HOH HOH . F 3 HOH B 49 1114 1114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . D 2 19.993 14.205 -39.007 1 15.26 ? N1 CTP 630 B 1 HETATM 2 C C2 CTP . . . D 2 20.292 12.894 -38.868 1 18.71 ? C2 CTP 630 B 1 HETATM 3 N N3 CTP . . . D 2 19.545 12.037 -38.182 1 20.59 ? N3 CTP 630 B 1 HETATM 4 C C4 CTP . . . D 2 18.433 12.461 -37.583 1 21.86 ? C4 CTP 630 B 1 HETATM 5 C C5 CTP . . . D 2 18.065 13.793 -37.673 1 18.66 ? C5 CTP 630 B 1 HETATM 6 C C6 CTP . . . D 2 18.883 14.633 -38.401 1 16.5 ? C6 CTP 630 B 1 HETATM 7 O O2 CTP . . . D 2 21.311 12.407 -39.388 1 20.89 ? O2 CTP 630 B 1 HETATM 8 N N4 CTP . . . D 2 17.713 11.567 -36.907 1 19.02 ? N4 CTP 630 B 1 HETATM 9 C C1' CTP . . . D 2 20.824 15.073 -39.843 1 21.8 ? C1' CTP 630 B 1 HETATM 10 C C2' CTP . . . D 2 20.102 15.336 -41.135 1 19.13 ? C2' CTP 630 B 1 HETATM 11 O O2' CTP . . . D 2 20.268 14.206 -41.955 1 25.86 ? O2' CTP 630 B 1 HETATM 12 C C3' CTP . . . D 2 20.774 16.571 -41.633 1 27.79 ? C3' CTP 630 B 1 HETATM 13 C C4' CTP . . . D 2 21.301 17.247 -40.372 1 21.91 ? C4' CTP 630 B 1 HETATM 14 O O4' CTP . . . D 2 20.999 16.368 -39.285 1 20.73 ? O4' CTP 630 B 1 HETATM 15 O O3' CTP . . . D 2 21.967 16.285 -42.388 1 30.57 ? O3' CTP 630 B 1 HETATM 16 C C5' CTP . . . D 2 20.549 18.551 -40.274 1 27.25 ? C5' CTP 630 B 1 HETATM 17 O O5' CTP . . . D 2 19.747 18.548 -39.124 1 31.45 ? O5' CTP 630 B 1 HETATM 18 P PA CTP . . . D 2 18.123 18.857 -39.055 1 24.56 ? PA CTP 630 B 1 HETATM 19 O O1A CTP . . . D 2 17.498 18.804 -40.472 1 28.28 ? O1A CTP 630 B 1 HETATM 20 O O2A CTP . . . D 2 18.08 20.306 -38.532 1 18.15 ? O2A CTP 630 B 1 HETATM 21 O O3A CTP . . . D 2 17.472 17.725 -38.021 1 34.8 ? O3A CTP 630 B 1 HETATM 22 P PB CTP . . . D 2 15.949 17.159 -38.314 1 26.5 ? PB CTP 630 B 1 HETATM 23 O O1B CTP . . . D 2 15.554 16.337 -37.037 1 30.53 ? O1B CTP 630 B 1 HETATM 24 O O2B CTP . . . D 2 15.954 16.219 -39.574 1 28.44 ? O2B CTP 630 B 1 HETATM 25 O O3B CTP . . . D 2 14.914 18.44 -38.475 1 35.28 ? O3B CTP 630 B 1 HETATM 26 P PG CTP . . . D 2 13.342 18.251 -38.959 1 23.28 ? PG CTP 630 B 1 HETATM 27 O O1G CTP . . . D 2 12.752 16.955 -38.29 1 22.59 ? O1G CTP 630 B 1 HETATM 28 O O2G CTP . . . D 2 13.327 18.118 -40.534 1 32.26 ? O2G CTP 630 B 1 HETATM 29 O O3G CTP . . . D 2 12.577 19.52 -38.479 1 21.82 ? O3G CTP 630 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #