data_1CP8 # _model_server_result.job_id 5o5LKIUNvJzFuHQE6PhuUg _model_server_result.datetime_utc '2024-10-18 13:16:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":13}' # _entry.id 1CP8 # _exptl.entry_id 1CP8 _exptl.method 'SOLUTION NMR' # _entity.details ;UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266, ; _entity.formula_weight 148.157 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-Olivopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CP8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 DDL DDA C1 O1 . O3 HO3 . sing 2 ? 2 3 2 DRI DDL C1 O1 . O3 HO3 . sing 3 ? 2 4 3 DDA DRI C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C DDA 1 C 1 DDA N 9 DDA 2 n C DDL 2 C 2 DDL N 10 DDL 2 n C DRI 3 C 3 DRI N 11 DRI 2 n C DDA 4 C 4 DDA N 12 DDA 2 n D DDA 1 D 1 DDA M 3 DDA 2 n D DDL 2 D 2 DDL M 4 DDL 2 n D DRI 3 D 3 DRI M 5 DRI 2 n D DDA 4 D 4 DDA M 6 DDA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O1 DDA . A DDA 13 1_555 F C6 DXA . A DXA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale2 F C2 DXA . A DXA 14 1_555 C O1 DDA . C DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 G O1 DDA . B DDA 13 1_555 I C6 DXA . B DXA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale4 I C2 DXA . B DXA 15 1_555 D O1 DDA . D DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale5 C O3 DDA . C DDA 1 1_555 C C1 DDL . C DDL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 sing covale ? covale6 C O3 DDL . C DDL 2 1_555 C C1 DRI . C DRI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 sing covale ? covale7 C O3 DRI . C DRI 3 1_555 C C1 DDA . C DDA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale8 D O3 DDA . D DDA 1 1_555 D C1 DDL . D DDL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 sing covale ? covale9 D O3 DDL . D DDL 2 1_555 D C1 DRI . D DRI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 sing covale ? covale10 D O3 DRI . D DRI 3 1_555 D C1 DDA . D DDA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? metalc ? metalc1 F O1 DXA . A DXA 14 1_555 H MG MG . B MG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 F O9 DXA . A DXA 14 1_555 H MG MG . B MG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 H MG MG . B MG 14 1_555 I O9 DXA . B DXA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 H MG MG . B MG 14 1_555 I O1 DXA . B DXA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 8 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 DA 8 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 2 A DT 2 1_555 B N1 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 2 A DT 2 1_555 B N6 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 3 A DG 3 1_555 B N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 3 A DG 3 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 3 A DG 3 1_555 B N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 4 A DG 4 1_555 B N3 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 4 A DG 4 1_555 B O2 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 4 A DG 4 1_555 B N4 DC 5 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 A DC 6 1_555 B N1 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 A DC 6 1_555 B O6 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 A DC 6 1_555 B N2 DG 3 B DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 7 A DA 7 1_555 B N3 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 7 A DA 7 1_555 B O4 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 8 A DA 8 1_555 B N3 DT 1 B DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 8 A DA 8 1_555 B O4 DT 1 B DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H12 O4' _chem_comp.formula_weight 148.157 _chem_comp.id DDA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-Olivopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-Olivose;2,6-dideoxy-beta-D-arabino-hexopyranose;2,6-dideoxy-beta-D-glucopyranose;2,6-dideoxy-beta-D-mannopyranose;2-deoxy-beta-D-quinovopyranose;2-deoxy-beta-D-rhamnoopyranose;D-Olivose;Olivose;2,6-DIDEOXY-BETA-D-GLUCOSE;2,6-DIDEOXY-BETA-D-MANNOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DDA sing 74 n n C1 O5 DDA sing 75 n n C1 O1 DDA sing 76 n n C1 H1 DDA sing 77 n n C2 C3 DDA sing 78 n n C2 H21 DDA sing 79 n n C2 H22 DDA sing 80 n n C3 C4 DDA sing 81 n n C3 O3 DDA sing 82 n n C3 H3 DDA sing 83 n n C4 C5 DDA sing 84 n n C4 O4 DDA sing 85 n n C4 H4 DDA sing 86 n n C5 C6 DDA sing 87 n n C5 O5 DDA sing 88 n n C5 H5 DDA sing 89 n n C6 H61 DDA sing 90 n n C6 H62 DDA sing 91 n n C6 H63 DDA sing 92 n n O1 HO1 DDA sing 93 n n O3 HO3 DDA sing 94 n n O4 HO4 DDA sing 95 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version DDA DOlib 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 DDA b-D-Olivopyranose 'COMMON NAME' GMML 1 DDA b-D-2,6-deoxy-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 DDA Oli 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1CP8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DDA A 1 13 7 DDA DDA . F 4 DXA A 1 14 8 DXA DXA . G 3 DDA B 1 13 1 DDA DDA . H 5 MG B 1 14 13 MG MG . I 4 DXA B 1 15 2 DXA DXA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DDA . . . G 3 6.084 4.536 -8.698 1 0 ? C1 DDA 13 B 1 HETATM 2 C C2 DDA . . . G 3 4.916 5.341 -9.275 1 0.01 ? C2 DDA 13 B 1 HETATM 3 C C3 DDA . . . G 3 4.995 5.438 -10.803 1 0.01 ? C3 DDA 13 B 1 HETATM 4 C C4 DDA . . . G 3 6.419 5.715 -11.294 1 0 ? C4 DDA 13 B 1 HETATM 5 C C5 DDA . . . G 3 7.451 4.863 -10.556 1 0.01 ? C5 DDA 13 B 1 HETATM 6 C C6 DDA . . . G 3 8.881 5.237 -10.944 1 0.01 ? C6 DDA 13 B 1 HETATM 7 O O5 DDA . . . G 3 7.293 5.064 -9.176 1 0 ? O5 DDA 13 B 1 HETATM 8 O O1 DDA . . . G 3 6.094 4.644 -7.258 1 0 ? O1 DDA 13 B 1 HETATM 9 O O3 DDA . . . G 3 4.159 6.483 -11.232 1 0 ? O3 DDA 13 B 1 HETATM 10 O O4 DDA . . . G 3 6.489 5.423 -12.666 1 0.01 ? O4 DDA 13 B 1 HETATM 11 H H1 DDA . . . G 3 6.006 3.489 -9.023 1 0.01 ? H1 DDA 13 B 1 HETATM 12 H H21 DDA . . . G 3 4.912 6.339 -8.848 1 0.03 ? H21 DDA 13 B 1 HETATM 13 H H22 DDA . . . G 3 3.974 4.874 -8.987 1 0.02 ? H22 DDA 13 B 1 HETATM 14 H H3 DDA . . . G 3 4.62 4.518 -11.253 1 0.01 ? H3 DDA 13 B 1 HETATM 15 H H4 DDA . . . G 3 6.654 6.773 -11.175 1 0.02 ? H4 DDA 13 B 1 HETATM 16 H H5 DDA . . . G 3 7.278 3.809 -10.772 1 0.01 ? H5 DDA 13 B 1 HETATM 17 H H61 DDA . . . G 3 9.594 4.518 -10.54 1 0.02 ? H61 DDA 13 B 1 HETATM 18 H H62 DDA . . . G 3 8.998 5.256 -12.027 1 0.01 ? H62 DDA 13 B 1 HETATM 19 H H63 DDA . . . G 3 9.143 6.223 -10.56 1 0.01 ? H63 DDA 13 B 1 HETATM 20 H HO3 DDA . . . G 3 3.528 6.1 -11.827 1 0 ? HO3 DDA 13 B 1 HETATM 21 H HO4 DDA . . . G 3 6.98 6.126 -13.07 1 0 ? HO4 DDA 13 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #