data_1CPQ # _model_server_result.job_id h-aYm-fsTnkRMvz7VylMvg _model_server_result.datetime_utc '2024-11-16 23:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 1CPQ # _exptl.entry_id 1CPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CPQ _cell.length_a 47.82 _cell.length_b 72.59 _cell.length_c 34.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 118 1_555 B CAB HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 A SG CYS 121 A CYS 121 1_555 B CAC HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc1 A NE2 HIS 122 A HIS 122 1_555 B FE HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CPQ _atom_sites.fract_transf_matrix[1][1] 0.020912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 130 1 HEM HEM . C 3 HOH A 1 131 1 HOH HOH . C 3 HOH A 2 132 2 HOH HOH . C 3 HOH A 3 133 3 HOH HOH . C 3 HOH A 4 134 4 HOH HOH . C 3 HOH A 5 135 5 HOH HOH . C 3 HOH A 6 136 6 HOH HOH . C 3 HOH A 7 137 7 HOH HOH . C 3 HOH A 8 138 8 HOH HOH . C 3 HOH A 9 139 9 HOH HOH . C 3 HOH A 10 140 10 HOH HOH . C 3 HOH A 11 141 11 HOH HOH . C 3 HOH A 12 142 12 HOH HOH . C 3 HOH A 13 143 13 HOH HOH . C 3 HOH A 14 144 14 HOH HOH . C 3 HOH A 15 145 15 HOH HOH . C 3 HOH A 16 146 16 HOH HOH . C 3 HOH A 17 147 17 HOH HOH . C 3 HOH A 18 148 18 HOH HOH . C 3 HOH A 19 149 19 HOH HOH . C 3 HOH A 20 150 20 HOH HOH . C 3 HOH A 21 151 21 HOH HOH . C 3 HOH A 22 152 22 HOH HOH . C 3 HOH A 23 153 23 HOH HOH . C 3 HOH A 24 154 24 HOH HOH . C 3 HOH A 25 155 25 HOH HOH . C 3 HOH A 26 156 26 HOH HOH . C 3 HOH A 27 157 27 HOH HOH . C 3 HOH A 28 158 28 HOH HOH . C 3 HOH A 29 159 29 HOH HOH . C 3 HOH A 30 160 30 HOH HOH . C 3 HOH A 31 161 31 HOH HOH . C 3 HOH A 32 162 32 HOH HOH . C 3 HOH A 33 163 33 HOH HOH . C 3 HOH A 34 164 34 HOH HOH . C 3 HOH A 35 165 35 HOH HOH . C 3 HOH A 36 166 36 HOH HOH . C 3 HOH A 37 167 37 HOH HOH . C 3 HOH A 38 168 38 HOH HOH . C 3 HOH A 39 169 39 HOH HOH . C 3 HOH A 40 170 40 HOH HOH . C 3 HOH A 41 171 41 HOH HOH . C 3 HOH A 42 172 42 HOH HOH . C 3 HOH A 43 173 43 HOH HOH . C 3 HOH A 44 174 44 HOH HOH . C 3 HOH A 45 175 45 HOH HOH . C 3 HOH A 46 176 46 HOH HOH . C 3 HOH A 47 177 47 HOH HOH . C 3 HOH A 48 178 48 HOH HOH . C 3 HOH A 49 179 49 HOH HOH . C 3 HOH A 50 180 50 HOH HOH . C 3 HOH A 51 181 51 HOH HOH . C 3 HOH A 52 182 52 HOH HOH . C 3 HOH A 53 183 53 HOH HOH . C 3 HOH A 54 184 54 HOH HOH . C 3 HOH A 55 185 55 HOH HOH . C 3 HOH A 56 186 56 HOH HOH . C 3 HOH A 57 187 57 HOH HOH . C 3 HOH A 58 188 58 HOH HOH . C 3 HOH A 59 189 59 HOH HOH . C 3 HOH A 60 190 60 HOH HOH . C 3 HOH A 61 191 61 HOH HOH . C 3 HOH A 62 192 62 HOH HOH . C 3 HOH A 63 193 63 HOH HOH . C 3 HOH A 64 194 64 HOH HOH . C 3 HOH A 65 195 65 HOH HOH . C 3 HOH A 66 196 66 HOH HOH . C 3 HOH A 67 197 67 HOH HOH . C 3 HOH A 68 198 68 HOH HOH . C 3 HOH A 69 199 69 HOH HOH . C 3 HOH A 70 200 70 HOH HOH . C 3 HOH A 71 201 71 HOH HOH . C 3 HOH A 72 202 72 HOH HOH . C 3 HOH A 73 203 73 HOH HOH . C 3 HOH A 74 204 74 HOH HOH . C 3 HOH A 75 205 75 HOH HOH . C 3 HOH A 76 206 76 HOH HOH . C 3 HOH A 77 207 77 HOH HOH . C 3 HOH A 78 208 78 HOH HOH . C 3 HOH A 79 209 79 HOH HOH . C 3 HOH A 80 210 80 HOH HOH . C 3 HOH A 81 211 81 HOH HOH . C 3 HOH A 82 212 82 HOH HOH . C 3 HOH A 83 213 83 HOH HOH . C 3 HOH A 84 214 84 HOH HOH . C 3 HOH A 85 215 85 HOH HOH . C 3 HOH A 86 216 86 HOH HOH . C 3 HOH A 87 217 87 HOH HOH . C 3 HOH A 88 218 88 HOH HOH . C 3 HOH A 89 219 89 HOH HOH . C 3 HOH A 90 220 90 HOH HOH . C 3 HOH A 91 221 91 HOH HOH . C 3 HOH A 92 222 92 HOH HOH . C 3 HOH A 93 223 93 HOH HOH . C 3 HOH A 94 224 94 HOH HOH . C 3 HOH A 95 225 95 HOH HOH . C 3 HOH A 96 226 96 HOH HOH . C 3 HOH A 97 227 97 HOH HOH . C 3 HOH A 98 228 98 HOH HOH . C 3 HOH A 99 229 99 HOH HOH . C 3 HOH A 100 230 100 HOH HOH . C 3 HOH A 101 231 101 HOH HOH . C 3 HOH A 102 232 102 HOH HOH . C 3 HOH A 103 233 103 HOH HOH . C 3 HOH A 104 234 104 HOH HOH . C 3 HOH A 105 235 105 HOH HOH . C 3 HOH A 106 236 106 HOH HOH . C 3 HOH A 107 237 107 HOH HOH . C 3 HOH A 108 238 108 HOH HOH . C 3 HOH A 109 239 109 HOH HOH . C 3 HOH A 110 240 110 HOH HOH . C 3 HOH A 111 241 111 HOH HOH . C 3 HOH A 112 242 112 HOH HOH . C 3 HOH A 113 243 113 HOH HOH . C 3 HOH A 114 244 114 HOH HOH . C 3 HOH A 115 245 115 HOH HOH . C 3 HOH A 116 246 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 23.674 18.876 20.657 1 13.67 ? CHA HEM 130 A 1 HETATM 2 C CHB HEM . . . B 2 26.489 22.647 21.819 1 11.62 ? CHB HEM 130 A 1 HETATM 3 C CHC HEM . . . B 2 28.437 20.027 25.301 1 12.88 ? CHC HEM 130 A 1 HETATM 4 C CHD HEM . . . B 2 25.69 16.22 24.142 1 12.85 ? CHD HEM 130 A 1 HETATM 5 C C1A HEM . . . B 2 24.256 20.135 20.673 1 13.63 ? C1A HEM 130 A 1 HETATM 6 C C2A HEM . . . B 2 23.873 21.214 19.766 1 14.49 ? C2A HEM 130 A 1 HETATM 7 C C3A HEM . . . B 2 24.673 22.291 20.092 1 12.2 ? C3A HEM 130 A 1 HETATM 8 C C4A HEM . . . B 2 25.525 21.847 21.22 1 11.94 ? C4A HEM 130 A 1 HETATM 9 C CMA HEM . . . B 2 24.733 23.672 19.411 1 10.89 ? CMA HEM 130 A 1 HETATM 10 C CAA HEM . . . B 2 22.765 21.155 18.719 1 15.92 ? CAA HEM 130 A 1 HETATM 11 C CBA HEM . . . B 2 21.489 21.605 19.401 1 24.3 ? CBA HEM 130 A 1 HETATM 12 C CGA HEM . . . B 2 20.392 22.002 18.423 1 29.82 ? CGA HEM 130 A 1 HETATM 13 O O1A HEM . . . B 2 20.541 23.046 17.748 1 33.5 ? O1A HEM 130 A 1 HETATM 14 O O2A HEM . . . B 2 19.372 21.289 18.345 1 31.22 ? O2A HEM 130 A 1 HETATM 15 C C1B HEM . . . B 2 27.283 22.24 22.856 1 11.57 ? C1B HEM 130 A 1 HETATM 16 C C2B HEM . . . B 2 28.303 23.071 23.482 1 11.86 ? C2B HEM 130 A 1 HETATM 17 C C3B HEM . . . B 2 28.859 22.284 24.458 1 12.46 ? C3B HEM 130 A 1 HETATM 18 C C4B HEM . . . B 2 28.161 21.038 24.432 1 11.62 ? C4B HEM 130 A 1 HETATM 19 C CMB HEM . . . B 2 28.731 24.5 23.096 1 10.18 ? CMB HEM 130 A 1 HETATM 20 C CAB HEM . . . B 2 30.089 22.61 25.329 1 11.96 ? CAB HEM 130 A 1 HETATM 21 C CBB HEM . . . B 2 29.877 23.781 26.284 1 12.97 ? CBB HEM 130 A 1 HETATM 22 C C1C HEM . . . B 2 27.871 18.77 25.293 1 13.5 ? C1C HEM 130 A 1 HETATM 23 C C2C HEM . . . B 2 28.19 17.742 26.322 1 14.56 ? C2C HEM 130 A 1 HETATM 24 C C3C HEM . . . B 2 27.395 16.668 25.972 1 12.91 ? C3C HEM 130 A 1 HETATM 25 C C4C HEM . . . B 2 26.628 17.054 24.779 1 13.6 ? C4C HEM 130 A 1 HETATM 26 C CMC HEM . . . B 2 29.249 17.878 27.438 1 14.11 ? CMC HEM 130 A 1 HETATM 27 C CAC HEM . . . B 2 27.414 15.237 26.446 1 12.52 ? CAC HEM 130 A 1 HETATM 28 C CBC HEM . . . B 2 27.659 15.039 27.968 1 12.23 ? CBC HEM 130 A 1 HETATM 29 C C1D HEM . . . B 2 24.899 16.618 23.095 1 11.93 ? C1D HEM 130 A 1 HETATM 30 C C2D HEM . . . B 2 23.897 15.759 22.462 1 13.85 ? C2D HEM 130 A 1 HETATM 31 C C3D HEM . . . B 2 23.338 16.499 21.477 1 12.92 ? C3D HEM 130 A 1 HETATM 32 C C4D HEM . . . B 2 23.969 17.82 21.517 1 13.31 ? C4D HEM 130 A 1 HETATM 33 C CMD HEM . . . B 2 23.498 14.327 22.86 1 12.33 ? CMD HEM 130 A 1 HETATM 34 C CAD HEM . . . B 2 22.142 16.039 20.653 1 14.34 ? CAD HEM 130 A 1 HETATM 35 C CBD HEM . . . B 2 20.829 16.469 21.306 1 14.44 ? CBD HEM 130 A 1 HETATM 36 C CGD HEM . . . B 2 19.618 16.158 20.448 1 17.69 ? CGD HEM 130 A 1 HETATM 37 O O1D HEM . . . B 2 19.74 16.203 19.208 1 17.58 ? O1D HEM 130 A 1 HETATM 38 O O2D HEM . . . B 2 18.539 15.881 21.002 1 16.04 ? O2D HEM 130 A 1 HETATM 39 N NA HEM . . . B 2 25.278 20.529 21.56 1 13.22 ? NA HEM 130 A 1 HETATM 40 N NB HEM . . . B 2 27.216 20.977 23.432 1 11.6 ? NB HEM 130 A 1 HETATM 41 N NC HEM . . . B 2 26.924 18.345 24.374 1 13.11 ? NC HEM 130 A 1 HETATM 42 N ND HEM . . . B 2 24.952 17.879 22.496 1 13.74 ? ND HEM 130 A 1 HETATM 43 FE FE HEM . . . B 2 26.218 19.367 22.828 1 12.86 ? FE HEM 130 A 1 HETATM 44 H HHB HEM . . . B 2 26.601 23.672 21.471 1 10 ? HHB HEM 130 A 1 HETATM 45 H HHC HEM . . . B 2 29.029 20.269 26.178 1 10 ? HHC HEM 130 A 1 HETATM 46 H HHD HEM . . . B 2 25.597 15.178 24.441 1 10 ? HHD HEM 130 A 1 HETATM 47 H HHA HEM . . . B 2 22.995 18.624 19.844 1 10 ? HHA HEM 130 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 47 #