data_1CPR # _model_server_result.job_id 0p-izKpZ9Nr-E7H1urqvaA _model_server_result.datetime_utc '2025-03-04 07:28:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":136}' # _entry.id 1CPR # _exptl.entry_id 1CPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.94 _cell.angle_gamma 90 _cell.entry_id 1CPR _cell.length_a 39.68 _cell.length_b 46.85 _cell.length_c 40.75 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 118 1_555 H CAB HEM . A HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 A SG CYS 121 A CYS 121 1_555 H CAC HEM . A HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 E ZN ZN . A ZN 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 A OD1 ASP 32 A ASP 32 1_555 B ZN ZN . A ZN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 A OE1 GLU 34 A GLU 34 1_555 B ZN ZN . A ZN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 A ND1 HIS 89 A HIS 89 1_555 F ZN ZN . A ZN 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 A NE2 HIS 89 A HIS 89 1_555 G ZN ZN . A ZN 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 A ND1 HIS 122 A HIS 122 1_555 D ZN ZN . A ZN 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 A NE2 HIS 122 A HIS 122 1_555 H FE HEM . A HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc8 A OD2 ASP 124 A ASP 124 1_556 B ZN ZN . A ZN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc9 A OD1 ASP 124 A ASP 124 1_556 B ZN ZN . A ZN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc10 D ZN ZN . A ZN 132 1_555 I O HOH . A HOH 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 E ZN ZN . A ZN 133 1_555 H O2A HEM . A HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc12 E ZN ZN . A ZN 133 1_555 H O1A HEM . A HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc13 G ZN ZN . A ZN 135 1_555 I O HOH . A HOH 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc14 G ZN ZN . A ZN 135 1_555 I O HOH . A HOH 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1CPR _atom_sites.fract_transf_matrix[1][1] 0.025202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009644 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 130 1 ZN ZN . C 2 ZN A 1 131 2 ZN ZN . D 2 ZN A 1 132 3 ZN ZN . E 2 ZN A 1 133 4 ZN ZN . F 2 ZN A 1 134 5 ZN ZN . G 2 ZN A 1 135 6 ZN ZN . H 3 HEM A 1 136 1 HEM HEM . I 4 HOH A 1 137 1 HOH HOH . I 4 HOH A 2 138 2 HOH HOH . I 4 HOH A 3 139 3 HOH HOH . I 4 HOH A 4 140 4 HOH HOH . I 4 HOH A 5 141 5 HOH HOH . I 4 HOH A 6 142 6 HOH HOH . I 4 HOH A 7 143 7 HOH HOH . I 4 HOH A 8 144 8 HOH HOH . I 4 HOH A 9 145 9 HOH HOH . I 4 HOH A 10 146 10 HOH HOH . I 4 HOH A 11 147 12 HOH HOH . I 4 HOH A 12 148 13 HOH HOH . I 4 HOH A 13 149 14 HOH HOH . I 4 HOH A 14 150 15 HOH HOH . I 4 HOH A 15 151 16 HOH HOH . I 4 HOH A 16 152 17 HOH HOH . I 4 HOH A 17 153 18 HOH HOH . I 4 HOH A 18 154 19 HOH HOH . I 4 HOH A 19 155 20 HOH HOH . I 4 HOH A 20 156 21 HOH HOH . I 4 HOH A 21 157 22 HOH HOH . I 4 HOH A 22 158 23 HOH HOH . I 4 HOH A 23 159 24 HOH HOH . I 4 HOH A 24 160 25 HOH HOH . I 4 HOH A 25 161 26 HOH HOH . I 4 HOH A 26 162 27 HOH HOH . I 4 HOH A 27 163 28 HOH HOH . I 4 HOH A 28 164 29 HOH HOH . I 4 HOH A 29 165 30 HOH HOH . I 4 HOH A 30 166 31 HOH HOH . I 4 HOH A 31 167 32 HOH HOH . I 4 HOH A 32 168 33 HOH HOH . I 4 HOH A 33 169 34 HOH HOH . I 4 HOH A 34 170 35 HOH HOH . I 4 HOH A 35 171 36 HOH HOH . I 4 HOH A 36 172 37 HOH HOH . I 4 HOH A 37 173 38 HOH HOH . I 4 HOH A 38 174 39 HOH HOH . I 4 HOH A 39 175 40 HOH HOH . I 4 HOH A 40 176 41 HOH HOH . I 4 HOH A 41 177 42 HOH HOH . I 4 HOH A 42 178 43 HOH HOH . I 4 HOH A 43 179 44 HOH HOH . I 4 HOH A 44 180 45 HOH HOH . I 4 HOH A 45 181 46 HOH HOH . I 4 HOH A 46 182 47 HOH HOH . I 4 HOH A 47 183 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 3 28.444 22.265 18.886 1 4.38 ? CHA HEM 136 A 1 HETATM 2 C CHB HEM . . . H 3 26.947 19.488 22.552 1 4.16 ? CHB HEM 136 A 1 HETATM 3 C CHC HEM . . . H 3 24.104 17.03 19.575 1 5.36 ? CHC HEM 136 A 1 HETATM 4 C CHD HEM . . . H 3 25.595 19.734 15.87 1 7.26 ? CHD HEM 136 A 1 HETATM 5 C C1A HEM . . . H 3 28.201 21.761 20.138 1 11.25 ? C1A HEM 136 A 1 HETATM 6 C C2A HEM . . . H 3 28.767 22.309 21.37 1 10.31 ? C2A HEM 136 A 1 HETATM 7 C C3A HEM . . . H 3 28.343 21.518 22.374 1 6.08 ? C3A HEM 136 A 1 HETATM 8 C C4A HEM . . . H 3 27.517 20.483 21.801 1 7.94 ? C4A HEM 136 A 1 HETATM 9 C CMA HEM . . . H 3 28.766 21.687 23.821 1 4.61 ? CMA HEM 136 A 1 HETATM 10 C CAA HEM . . . H 3 29.705 23.504 21.545 1 13.71 ? CAA HEM 136 A 1 HETATM 11 C CBA HEM . . . H 3 28.95 24.806 21.706 1 22.49 ? CBA HEM 136 A 1 HETATM 12 C CGA HEM . . . H 3 29.865 26.004 21.876 1 25.65 ? CGA HEM 136 A 1 HETATM 13 O O1A HEM . . . H 3 30.402 26.203 22.988 1 30.97 ? O1A HEM 136 A 1 HETATM 14 O O2A HEM . . . H 3 30.038 26.765 20.901 1 32.56 ? O2A HEM 136 A 1 HETATM 15 C C1B HEM . . . H 3 26.145 18.54 22.057 1 3.65 ? C1B HEM 136 A 1 HETATM 16 C C2B HEM . . . H 3 25.602 17.455 22.835 1 8.19 ? C2B HEM 136 A 1 HETATM 17 C C3B HEM . . . H 3 24.751 16.794 21.978 1 5.45 ? C3B HEM 136 A 1 HETATM 18 C C4B HEM . . . H 3 24.798 17.471 20.702 1 7.08 ? C4B HEM 136 A 1 HETATM 19 C CMB HEM . . . H 3 25.878 17.135 24.322 1 2 ? CMB HEM 136 A 1 HETATM 20 C CAB HEM . . . H 3 23.928 15.542 22.214 1 2.98 ? CAB HEM 136 A 1 HETATM 21 C CBB HEM . . . H 3 22.811 15.701 23.268 1 2.48 ? CBB HEM 136 A 1 HETATM 22 C C1C HEM . . . H 3 24.299 17.525 18.292 1 8.12 ? C1C HEM 136 A 1 HETATM 23 C C2C HEM . . . H 3 23.492 17.119 17.171 1 7 ? C2C HEM 136 A 1 HETATM 24 C C3C HEM . . . H 3 23.885 17.922 16.124 1 6.47 ? C3C HEM 136 A 1 HETATM 25 C C4C HEM . . . H 3 24.923 18.78 16.626 1 7.97 ? C4C HEM 136 A 1 HETATM 26 C CMC HEM . . . H 3 22.501 15.92 17.2 1 2 ? CMC HEM 136 A 1 HETATM 27 C CAC HEM . . . H 3 23.653 17.797 14.61 1 7.52 ? CAC HEM 136 A 1 HETATM 28 C CBC HEM . . . H 3 22.306 17.267 14.168 1 2.42 ? CBC HEM 136 A 1 HETATM 29 C C1D HEM . . . H 3 26.599 20.59 16.342 1 3.65 ? C1D HEM 136 A 1 HETATM 30 C C2D HEM . . . H 3 27.196 21.663 15.556 1 6.9 ? C2D HEM 136 A 1 HETATM 31 C C3D HEM . . . H 3 27.955 22.415 16.421 1 5.19 ? C3D HEM 136 A 1 HETATM 32 C C4D HEM . . . H 3 27.854 21.78 17.742 1 5.77 ? C4D HEM 136 A 1 HETATM 33 C CMD HEM . . . H 3 27.02 21.84 14.028 1 2.95 ? CMD HEM 136 A 1 HETATM 34 C CAD HEM . . . H 3 28.786 23.671 16.109 1 7.03 ? CAD HEM 136 A 1 HETATM 35 C CBD HEM . . . H 3 27.88 24.861 16.368 1 9.43 ? CBD HEM 136 A 1 HETATM 36 C CGD HEM . . . H 3 28.569 26.192 16.173 1 11.97 ? CGD HEM 136 A 1 HETATM 37 O O1D HEM . . . H 3 29.781 26.304 16.44 1 9.31 ? O1D HEM 136 A 1 HETATM 38 O O2D HEM . . . H 3 27.888 27.146 15.763 1 14.61 ? O2D HEM 136 A 1 HETATM 39 N NA HEM . . . H 3 27.417 20.623 20.405 1 8.63 ? NA HEM 136 A 1 HETATM 40 N NB HEM . . . H 3 25.728 18.493 20.722 1 9.65 ? NB HEM 136 A 1 HETATM 41 N NC HEM . . . H 3 25.188 18.539 17.972 1 6.69 ? NC HEM 136 A 1 HETATM 42 N ND HEM . . . H 3 27.026 20.663 17.689 1 9.92 ? ND HEM 136 A 1 HETATM 43 FE FE HEM . . . H 3 26.496 19.463 19.14 1 7.71 ? FE HEM 136 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #