data_1CPS
#
_model_server_result.job_id            lzdBSzDqsITqPM3UnrfObw 
_model_server_result.datetime_utc      '2024-10-13 12:20:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1cps 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":588}' 
#
_entry.id    1CPS 
#
_exptl.entry_id    1CPS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.322 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-(2-CARBOXY-3-PHENYLPROPYL)THIODIIMINE-S-METHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.4 
_cell.angle_gamma         90 
_cell.entry_id            1CPS 
_cell.length_a            51.7 
_cell.length_b            60.4 
_cell.length_c            47.2 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1CPS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 138 A CYS 138 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc1 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc2 A OE1 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc3 A OE2 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A ND1 HIS 196 A HIS 196 1_555 B ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc5 B ZN ZN . A ZN 308 1_555 C N1 CPM . A CPM 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
#
_chem_comp.formula           'C11 H16 N2 O2 S' 
_chem_comp.formula_weight    240.322 
_chem_comp.id                CPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-(2-CARBOXY-3-PHENYLPROPYL)THIODIIMINE-S-METHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA CPM sing 70 n n 
CA1 S CPM sing 71 n n 
CA1 HA11 CPM sing 72 n n 
CA1 HA12 CPM sing 73 n n 
CA C CPM sing 74 n n 
CA CB CPM sing 75 n n 
CA HA CPM sing 76 n n 
C O CPM doub 77 n n 
C OXT CPM sing 78 n n 
CB CG CPM sing 79 n n 
CB HB1 CPM sing 80 n n 
CB HB2 CPM sing 81 n n 
CG CD1 CPM doub 82 n y 
CG CD2 CPM sing 83 n y 
CD1 CE1 CPM sing 84 n y 
CD1 HD1 CPM sing 85 n n 
CD2 CE2 CPM doub 86 n y 
CD2 HD2 CPM sing 87 n n 
CE1 CZ CPM doub 88 n y 
CE1 HE1 CPM sing 89 n n 
CE2 CZ CPM sing 90 n y 
CE2 HE2 CPM sing 91 n n 
CZ HZ CPM sing 92 n n 
OXT HXT CPM sing 93 n n 
S N1 CPM doub 94 n n 
S N2 CPM doub 95 n n 
S CM CPM sing 96 n n 
N1 HN1 CPM sing 97 n n 
N2 HN2 CPM sing 98 n n 
CM HM1 CPM sing 99 n n 
CM HM2 CPM sing 100 n n 
CM HM3 CPM sing 101 n n 
#
_atom_sites.entry_id                     1CPS 
_atom_sites.fract_transf_matrix[1][1]    0.019342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002512 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016556 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 308 308 ZN ZN . 
C 3 CPM A 1 588 588 CPM CPM . 
D 4 HOH A 1 309 309 HOH HOH . 
D 4 HOH A 2 310 310 HOH HOH . 
D 4 HOH A 3 311 311 HOH HOH . 
D 4 HOH A 4 312 312 HOH HOH . 
D 4 HOH A 5 313 313 HOH HOH . 
D 4 HOH A 6 314 314 HOH HOH . 
D 4 HOH A 7 315 315 HOH HOH . 
D 4 HOH A 8 316 316 HOH HOH . 
D 4 HOH A 9 317 317 HOH HOH . 
D 4 HOH A 10 318 318 HOH HOH . 
D 4 HOH A 11 319 319 HOH HOH . 
D 4 HOH A 12 320 320 HOH HOH . 
D 4 HOH A 13 321 321 HOH HOH . 
D 4 HOH A 14 322 322 HOH HOH . 
D 4 HOH A 15 323 323 HOH HOH . 
D 4 HOH A 16 324 324 HOH HOH . 
D 4 HOH A 17 325 325 HOH HOH . 
D 4 HOH A 18 326 326 HOH HOH . 
D 4 HOH A 19 327 327 HOH HOH . 
D 4 HOH A 20 328 328 HOH HOH . 
D 4 HOH A 21 329 329 HOH HOH . 
D 4 HOH A 22 330 330 HOH HOH . 
D 4 HOH A 23 331 331 HOH HOH . 
D 4 HOH A 24 332 332 HOH HOH . 
D 4 HOH A 25 333 333 HOH HOH . 
D 4 HOH A 26 334 334 HOH HOH . 
D 4 HOH A 27 335 335 HOH HOH . 
D 4 HOH A 28 336 336 HOH HOH . 
D 4 HOH A 29 337 337 HOH HOH . 
D 4 HOH A 30 338 338 HOH HOH . 
D 4 HOH A 31 339 339 HOH HOH . 
D 4 HOH A 32 340 340 HOH HOH . 
D 4 HOH A 33 341 341 HOH HOH . 
D 4 HOH A 34 342 342 HOH HOH . 
D 4 HOH A 35 343 343 HOH HOH . 
D 4 HOH A 36 344 344 HOH HOH . 
D 4 HOH A 37 345 345 HOH HOH . 
D 4 HOH A 38 346 346 HOH HOH . 
D 4 HOH A 39 347 347 HOH HOH . 
D 4 HOH A 40 348 348 HOH HOH . 
D 4 HOH A 41 349 349 HOH HOH . 
D 4 HOH A 42 350 350 HOH HOH . 
D 4 HOH A 43 351 351 HOH HOH . 
D 4 HOH A 44 352 352 HOH HOH . 
D 4 HOH A 45 353 353 HOH HOH . 
D 4 HOH A 46 354 354 HOH HOH . 
D 4 HOH A 47 355 355 HOH HOH . 
D 4 HOH A 48 356 356 HOH HOH . 
D 4 HOH A 49 357 357 HOH HOH . 
D 4 HOH A 50 358 358 HOH HOH . 
D 4 HOH A 51 359 359 HOH HOH . 
D 4 HOH A 52 360 360 HOH HOH . 
D 4 HOH A 53 361 361 HOH HOH . 
D 4 HOH A 54 362 362 HOH HOH . 
D 4 HOH A 55 363 363 HOH HOH . 
D 4 HOH A 56 364 364 HOH HOH . 
D 4 HOH A 57 365 365 HOH HOH . 
D 4 HOH A 58 366 366 HOH HOH . 
D 4 HOH A 59 367 367 HOH HOH . 
D 4 HOH A 60 368 368 HOH HOH . 
D 4 HOH A 61 369 369 HOH HOH . 
D 4 HOH A 62 370 370 HOH HOH . 
D 4 HOH A 63 371 371 HOH HOH . 
D 4 HOH A 64 372 372 HOH HOH . 
D 4 HOH A 65 373 373 HOH HOH . 
D 4 HOH A 66 374 374 HOH HOH . 
D 4 HOH A 67 375 375 HOH HOH . 
D 4 HOH A 68 376 376 HOH HOH . 
D 4 HOH A 69 377 377 HOH HOH . 
D 4 HOH A 70 378 378 HOH HOH . 
D 4 HOH A 71 379 379 HOH HOH . 
D 4 HOH A 72 380 380 HOH HOH . 
D 4 HOH A 73 381 381 HOH HOH . 
D 4 HOH A 74 382 382 HOH HOH . 
D 4 HOH A 75 383 383 HOH HOH . 
D 4 HOH A 76 384 384 HOH HOH . 
D 4 HOH A 77 385 385 HOH HOH . 
D 4 HOH A 78 386 386 HOH HOH . 
D 4 HOH A 79 387 387 HOH HOH . 
D 4 HOH A 80 388 388 HOH HOH . 
D 4 HOH A 81 389 389 HOH HOH . 
D 4 HOH A 82 390 390 HOH HOH . 
D 4 HOH A 83 391 391 HOH HOH . 
D 4 HOH A 84 392 392 HOH HOH . 
D 4 HOH A 85 393 393 HOH HOH . 
D 4 HOH A 86 394 394 HOH HOH . 
D 4 HOH A 87 395 395 HOH HOH . 
D 4 HOH A 88 396 396 HOH HOH . 
D 4 HOH A 89 397 397 HOH HOH . 
D 4 HOH A 90 398 398 HOH HOH . 
D 4 HOH A 91 399 399 HOH HOH . 
D 4 HOH A 92 400 400 HOH HOH . 
D 4 HOH A 93 401 401 HOH HOH . 
D 4 HOH A 94 402 402 HOH HOH . 
D 4 HOH A 95 403 403 HOH HOH . 
D 4 HOH A 96 404 404 HOH HOH . 
D 4 HOH A 97 405 405 HOH HOH . 
D 4 HOH A 98 406 406 HOH HOH . 
D 4 HOH A 99 407 407 HOH HOH . 
D 4 HOH A 100 408 408 HOH HOH . 
D 4 HOH A 101 409 409 HOH HOH . 
D 4 HOH A 102 410 410 HOH HOH . 
D 4 HOH A 103 411 411 HOH HOH . 
D 4 HOH A 104 412 412 HOH HOH . 
D 4 HOH A 105 413 413 HOH HOH . 
D 4 HOH A 106 414 414 HOH HOH . 
D 4 HOH A 107 415 415 HOH HOH . 
D 4 HOH A 108 416 416 HOH HOH . 
D 4 HOH A 109 417 417 HOH HOH . 
D 4 HOH A 110 418 418 HOH HOH . 
D 4 HOH A 111 419 419 HOH HOH . 
D 4 HOH A 112 420 420 HOH HOH . 
D 4 HOH A 113 421 421 HOH HOH . 
D 4 HOH A 114 422 422 HOH HOH . 
D 4 HOH A 115 423 423 HOH HOH . 
D 4 HOH A 116 424 424 HOH HOH . 
D 4 HOH A 117 425 425 HOH HOH . 
D 4 HOH A 118 426 426 HOH HOH . 
D 4 HOH A 119 427 427 HOH HOH . 
D 4 HOH A 120 428 428 HOH HOH . 
D 4 HOH A 121 429 429 HOH HOH . 
D 4 HOH A 122 430 430 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 CPM . . . C 3 -2.768 30.804 -6.553 1 10.86 ? CA1 CPM 588 A 1 
HETATM 2 C CA CPM . . . C 3 -2.592 29.898 -7.91 1 10.91 ? CA CPM 588 A 1 
HETATM 3 C C CPM . . . C 3 -0.919 29.777 -8.051 1 10.88 ? C CPM 588 A 1 
HETATM 4 O O CPM . . . C 3 -0.14 30.864 -7.676 1 10.81 ? O CPM 588 A 1 
HETATM 5 C CB CPM . . . C 3 -2.975 31.166 -8.94 1 10.97 ? CB CPM 588 A 1 
HETATM 6 C CG CPM . . . C 3 -2.58 30.442 -10.391 1 11.12 ? CG CPM 588 A 1 
HETATM 7 C CD1 CPM . . . C 3 -3.827 29.838 -11.14 1 11.1 ? CD1 CPM 588 A 1 
HETATM 8 C CD2 CPM . . . C 3 -1.129 30.442 -10.812 1 11.11 ? CD2 CPM 588 A 1 
HETATM 9 C CE1 CPM . . . C 3 -3.237 29.173 -12.497 1 11.14 ? CE1 CPM 588 A 1 
HETATM 10 C CE2 CPM . . . C 3 -0.74 29.717 -12.217 1 11.18 ? CE2 CPM 588 A 1 
HETATM 11 C CZ CPM . . . C 3 -2.108 29.173 -12.825 1 11.16 ? CZ CPM 588 A 1 
HETATM 12 O OXT CPM . . . C 3 -0.6 28.569 -8.519 1 10.75 ? OXT CPM 588 A 1 
HETATM 13 S S CPM . . . C 3 -2.841 29.717 -5.196 1 10.82 ? S CPM 588 A 1 
HETATM 14 N N1 CPM . . . C 3 -3.814 28.509 -5.664 1 10.84 ? N1 CPM 588 A 1 
HETATM 15 N N2 CPM . . . C 3 -1.402 29.294 -4.727 1 10.84 ? N2 CPM 588 A 1 
HETATM 16 C CM CPM . . . C 3 -3.631 30.562 -3.885 1 10.8 ? CM CPM 588 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#