data_1CQ2 # _model_server_result.job_id O4vojL2JKezQtKqN5G7ibg _model_server_result.datetime_utc '2024-12-26 11:53:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1CQ2 # _exptl.entry_id 1CQ2 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.82 _cell.angle_gamma 90 _cell.entry_id 1CQ2 _cell.length_a 64.53 _cell.length_b 30.91 _cell.length_c 34.78 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQ2 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 C O DOD . A DOD 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 118 n n CHA C4D HEM doub 119 n n CHA HHA HEM sing 120 n n CHB C4A HEM sing 121 n n CHB C1B HEM doub 122 n n CHB HHB HEM sing 123 n n CHC C4B HEM sing 124 n n CHC C1C HEM doub 125 n n CHC HHC HEM sing 126 n n CHD C4C HEM doub 127 n n CHD C1D HEM sing 128 n n CHD HHD HEM sing 129 n n C1A C2A HEM doub 130 n y C1A NA HEM sing 131 n y C2A C3A HEM sing 132 n y C2A CAA HEM sing 133 n n C3A C4A HEM doub 134 n y C3A CMA HEM sing 135 n n C4A NA HEM sing 136 n y CMA HMA HEM sing 137 n n CMA HMAA HEM sing 138 n n CMA HMAB HEM sing 139 n n CAA CBA HEM sing 140 n n CAA HAA HEM sing 141 n n CAA HAAA HEM sing 142 n n CBA CGA HEM sing 143 n n CBA HBA HEM sing 144 n n CBA HBAA HEM sing 145 n n CGA O1A HEM doub 146 n n CGA O2A HEM sing 147 n n C1B C2B HEM sing 148 n n C1B NB HEM sing 149 n n C2B C3B HEM doub 150 n n C2B CMB HEM sing 151 n n C3B C4B HEM sing 152 n n C3B CAB HEM sing 153 n n C4B NB HEM doub 154 n n CMB HMB HEM sing 155 n n CMB HMBA HEM sing 156 n n CMB HMBB HEM sing 157 n n CAB CBB HEM doub 158 n n CAB HAB HEM sing 159 n n CBB HBB HEM sing 160 n n CBB HBBA HEM sing 161 n n C1C C2C HEM sing 162 n y C1C NC HEM sing 163 n y C2C C3C HEM doub 164 n y C2C CMC HEM sing 165 n n C3C C4C HEM sing 166 n y C3C CAC HEM sing 167 n n C4C NC HEM sing 168 n y CMC HMC HEM sing 169 n n CMC HMCA HEM sing 170 n n CMC HMCB HEM sing 171 n n CAC CBC HEM doub 172 n n CAC HAC HEM sing 173 n n CBC HBC HEM sing 174 n n CBC HBCA HEM sing 175 n n C1D C2D HEM sing 176 n n C1D ND HEM doub 177 n n C2D C3D HEM doub 178 n n C2D CMD HEM sing 179 n n C3D C4D HEM sing 180 n n C3D CAD HEM sing 181 n n C4D ND HEM sing 182 n n CMD HMD HEM sing 183 n n CMD HMDA HEM sing 184 n n CMD HMDB HEM sing 185 n n CAD CBD HEM sing 186 n n CAD HAD HEM sing 187 n n CAD HADA HEM sing 188 n n CBD CGD HEM sing 189 n n CBD HBD HEM sing 190 n n CBD HBDA HEM sing 191 n n CGD O1D HEM doub 192 n n CGD O2D HEM sing 193 n n O2A H2A HEM sing 194 n n O2D H2D HEM sing 195 n n FE NA HEM sing 196 n n FE NB HEM sing 197 n n FE NC HEM sing 198 n n FE ND HEM sing 199 n n # _atom_sites.entry_id 1CQ2 _atom_sites.fract_transf_matrix[1][1] 0.015477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004374 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 DOD A 1 155 1 DOD DOD . C 3 DOD A 2 156 2 DOD DOD . C 3 DOD A 3 157 3 DOD DOD . C 3 DOD A 4 158 4 DOD DOD . C 3 DOD A 5 159 5 DOD DOD . C 3 DOD A 6 160 6 DOD DOD . C 3 DOD A 7 161 7 DOD DOD . C 3 DOD A 8 162 8 DOD DOD . C 3 DOD A 9 163 9 DOD DOD . C 3 DOD A 10 164 10 DOD DOD . C 3 DOD A 11 165 11 DOD DOD . C 3 DOD A 12 166 12 DOD DOD . C 3 DOD A 13 167 13 DOD DOD . C 3 DOD A 14 168 14 DOD DOD . C 3 DOD A 15 169 15 DOD DOD . C 3 DOD A 16 170 16 DOD DOD . C 3 DOD A 17 171 17 DOD DOD . C 3 DOD A 18 172 18 DOD DOD . C 3 DOD A 19 173 19 DOD DOD . C 3 DOD A 20 174 20 DOD DOD . C 3 DOD A 21 175 21 DOD DOD . C 3 DOD A 22 176 22 DOD DOD . C 3 DOD A 23 177 23 DOD DOD . C 3 DOD A 24 178 24 DOD DOD . C 3 DOD A 25 179 25 DOD DOD . C 3 DOD A 26 180 26 DOD DOD . C 3 DOD A 27 181 27 DOD DOD . C 3 DOD A 28 182 28 DOD DOD . C 3 DOD A 29 183 29 DOD DOD . C 3 DOD A 30 184 30 DOD DOD . C 3 DOD A 31 185 31 DOD DOD . C 3 DOD A 32 186 32 DOD DOD . C 3 DOD A 33 187 33 DOD DOD . C 3 DOD A 34 188 34 DOD DOD . C 3 DOD A 35 189 35 DOD DOD . C 3 DOD A 36 190 36 DOD DOD . C 3 DOD A 37 191 37 DOD DOD . C 3 DOD A 38 192 38 DOD DOD . C 3 DOD A 39 193 39 DOD DOD . C 3 DOD A 40 194 40 DOD DOD . C 3 DOD A 41 195 41 DOD DOD . C 3 DOD A 42 196 42 DOD DOD . C 3 DOD A 43 197 43 DOD DOD . C 3 DOD A 44 198 44 DOD DOD . C 3 DOD A 45 199 45 DOD DOD . C 3 DOD A 46 200 46 DOD DOD . C 3 DOD A 47 201 47 DOD DOD . C 3 DOD A 48 202 48 DOD DOD . C 3 DOD A 49 203 49 DOD DOD . C 3 DOD A 50 204 50 DOD DOD . C 3 DOD A 51 205 51 DOD DOD . C 3 DOD A 52 206 52 DOD DOD . C 3 DOD A 53 207 53 DOD DOD . C 3 DOD A 54 208 54 DOD DOD . C 3 DOD A 55 209 55 DOD DOD . C 3 DOD A 56 210 56 DOD DOD . C 3 DOD A 57 211 57 DOD DOD . C 3 DOD A 58 212 58 DOD DOD . C 3 DOD A 59 213 59 DOD DOD . C 3 DOD A 60 214 60 DOD DOD . C 3 DOD A 61 215 61 DOD DOD . C 3 DOD A 62 216 62 DOD DOD . C 3 DOD A 63 217 63 DOD DOD . C 3 DOD A 64 218 64 DOD DOD . C 3 DOD A 65 219 65 DOD DOD . C 3 DOD A 66 220 66 DOD DOD . C 3 DOD A 67 221 67 DOD DOD . C 3 DOD A 68 222 68 DOD DOD . C 3 DOD A 69 223 69 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.948 31.196 4.976 1 5.5 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 14.078 27.984 8.083 1 9.28 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 13.367 24.882 4.475 1 5.5 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 15.554 27.923 1.391 1 7.17 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 15.586 30.564 6.169 1 6.98 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 15.496 31.219 7.415 1 7.81 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 14.978 30.272 8.32 1 6.73 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 14.725 29.096 7.575 1 7.11 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 14.59 30.524 9.775 1 9.23 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 15.876 32.676 7.728 1 7.75 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 14.666 33.568 7.988 1 9.84 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 13.676 33.547 6.833 1 5.6 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 12.548 33.039 7.025 1 5.5 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 14.024 34.034 5.736 1 9.41 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 13.703 26.846 7.387 1 7.3 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 13.1 25.696 7.949 1 7.39 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 12.934 24.78 6.894 1 5.76 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 13.363 25.427 5.728 1 6.22 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 12.628 25.495 9.391 1 6.19 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 12.423 23.48 7.004 1 7.77 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 12.991 22.524 7.866 1 7.37 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 14.002 25.382 3.357 1 5.5 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 14.178 24.667 2.174 1 5.5 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 14.82 25.529 1.26 1 5.51 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 14.96 26.78 1.926 1 5.5 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 13.776 23.212 1.912 1 7.46 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 14.898 25.287 -0.107 1 5.5 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 16.089 25.053 -0.786 1 7.14 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 15.765 29.138 2.075 1 5.5 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 16.474 30.25 1.556 1 5.51 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 16.678 31.146 2.632 1 5.5 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 16.053 30.584 3.749 1 5.5 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 17.025 30.413 0.128 1 8.27 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 17.61 32.344 2.627 1 5.5 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 19.042 31.899 2.782 1 7.83 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 20.008 33.051 2.753 1 10.19 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 20.414 33.447 1.639 1 13.9 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 20.379 33.558 3.833 1 11.62 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 15.045 29.291 6.261 1 5.55 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 13.862 26.673 6.036 1 9.08 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 14.518 26.652 3.229 1 5.5 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 15.515 29.346 3.421 1 5.5 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 14.436 28.115 4.682 1 6.87 ? FE HEM 154 A 1 HETATM 44 H HHB HEM . . . B 2 13.67 28.095 9.077 1 5.5 ? HHB HEM 154 A 1 HETATM 45 H HHC HEM . . . B 2 12.651 24.092 4.294 1 5.5 ? HHC HEM 154 A 1 HETATM 46 H HHD HEM . . . B 2 16.166 27.769 0.507 1 10.36 ? HHD HEM 154 A 1 HETATM 47 H HMA HEM . . . B 2 13.518 30.612 9.862 1 6.85 ? HMA HEM 154 A 1 HETATM 48 H HMAA HEM . . . B 2 15.053 31.43 10.124 1 5.51 ? HMAA HEM 154 A 1 HETATM 49 H HMAB HEM . . . B 2 14.928 29.705 10.389 1 5.5 ? HMAB HEM 154 A 1 HETATM 50 H HAA HEM . . . B 2 16.439 33.091 6.901 1 8.46 ? HAA HEM 154 A 1 HETATM 51 H HAAA HEM . . . B 2 16.509 32.681 8.601 1 6.71 ? HAAA HEM 154 A 1 HETATM 52 H HBA HEM . . . B 2 14.99 34.592 8.134 1 7.74 ? HBA HEM 154 A 1 HETATM 53 H HBAA HEM . . . B 2 14.155 33.239 8.875 1 12.14 ? HBAA HEM 154 A 1 HETATM 54 H HMB HEM . . . B 2 12.676 26.418 9.935 1 9.11 ? HMB HEM 154 A 1 HETATM 55 H HMBA HEM . . . B 2 13.262 24.77 9.87 1 5.5 ? HMBA HEM 154 A 1 HETATM 56 H HMBB HEM . . . B 2 11.612 25.123 9.399 1 5.5 ? HMBB HEM 154 A 1 HETATM 57 H HAB HEM . . . B 2 11.936 22.999 6.167 1 5.5 ? HAB HEM 154 A 1 HETATM 58 H HBB HEM . . . B 2 14.065 22.527 7.757 1 5.51 ? HBB HEM 154 A 1 HETATM 59 H HBBA HEM . . . B 2 12.619 21.541 7.639 1 7.58 ? HBBA HEM 154 A 1 HETATM 60 H HMC HEM . . . B 2 12.8 23.012 2.316 1 9.79 ? HMC HEM 154 A 1 HETATM 61 H HMCA HEM . . . B 2 14.489 22.554 2.377 1 5.73 ? HMCA HEM 154 A 1 HETATM 62 H HMCB HEM . . . B 2 13.761 23.017 0.859 1 6.71 ? HMCB HEM 154 A 1 HETATM 63 H HAC HEM . . . B 2 14.069 24.834 -0.63 1 7.81 ? HAC HEM 154 A 1 HETATM 64 H HBC HEM . . . B 2 15.902 24.515 -1.7 1 9.41 ? HBC HEM 154 A 1 HETATM 65 H HBCA HEM . . . B 2 16.552 25.996 -1.021 1 7.53 ? HBCA HEM 154 A 1 HETATM 66 H HMD HEM . . . B 2 16.57 31.272 -0.348 1 7.19 ? HMD HEM 154 A 1 HETATM 67 H HMDA HEM . . . B 2 16.815 29.529 -0.442 1 9.78 ? HMDA HEM 154 A 1 HETATM 68 H HMDB HEM . . . B 2 18.092 30.55 0.17 1 9.41 ? HMDB HEM 154 A 1 HETATM 69 H HAD HEM . . . B 2 17.346 33.012 3.443 1 6.64 ? HAD HEM 154 A 1 HETATM 70 H HADA HEM . . . B 2 17.501 32.872 1.684 1 6.82 ? HADA HEM 154 A 1 HETATM 71 H HBD HEM . . . B 2 19.28 31.221 1.977 1 10.02 ? HBD HEM 154 A 1 HETATM 72 H HBDA HEM . . . B 2 19.147 31.369 3.722 1 5.5 ? HBDA HEM 154 A 1 HETATM 73 H HHA HEM . . . B 2 15.917 32.291 4.977 1 10.41 ? HHA HEM 154 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #