data_1CQ7 # _model_server_result.job_id 3AXMdRdR2GONMb_yfI0C2w _model_server_result.datetime_utc '2024-12-21 13:14:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1CQ7 # _exptl.entry_id 1CQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CQ7 _cell.length_a 157.58 _cell.length_b 85.59 _cell.length_c 78.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H21 N2 O7 P' _chem_comp.formula_weight 348.289 _chem_comp.id PY5 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 COMPLEXED WITH 2-AMINO-PENTANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PY5 doub 277 n y N1 C6 PY5 sing 278 n y C2 C2A PY5 sing 279 n n C2 C3 PY5 sing 280 n y C2A H2A1 PY5 sing 281 n n C2A H2A2 PY5 sing 282 n n C2A H2A3 PY5 sing 283 n n C3 O3 PY5 sing 284 n n C3 C4 PY5 doub 285 n y O3 HO3 PY5 sing 286 n n C4 C4A PY5 sing 287 n n C4 C5 PY5 sing 288 n y C4A N PY5 sing 289 n n C4A H4A1 PY5 sing 290 n n C4A H4A2 PY5 sing 291 n n C5 C6 PY5 doub 292 n y C5 C5A PY5 sing 293 n n C6 H6 PY5 sing 294 n n C5A O4P PY5 sing 295 n n C5A H5A1 PY5 sing 296 n n C5A H5A2 PY5 sing 297 n n O4P P PY5 sing 298 n n P O1P PY5 doub 299 n n P O2P PY5 sing 300 n n P O3P PY5 sing 301 n n O2P HOP2 PY5 sing 302 n n O3P HOP3 PY5 sing 303 n n N CA PY5 sing 304 n n N HN2 PY5 sing 305 n n CA C PY5 sing 306 n n CA CB PY5 sing 307 n n CA HA PY5 sing 308 n n C O PY5 doub 309 n n C OXT PY5 sing 310 n n CB CG PY5 sing 311 n n CB HB1 PY5 sing 312 n n CB HB2 PY5 sing 313 n n CG CD PY5 sing 314 n n CG HG1 PY5 sing 315 n n CG HG2 PY5 sing 316 n n CD HD1 PY5 sing 317 n n CD HD2 PY5 sing 318 n n CD HD3 PY5 sing 319 n n OXT HXT PY5 sing 320 n n # _atom_sites.entry_id 1CQ7 _atom_sites.fract_transf_matrix[1][1] 0.006346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PY5 A 1 413 413 PY5 PY5 . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1071 1071 HOH HOH . C 3 HOH A 72 1072 1072 HOH HOH . C 3 HOH A 73 1073 1073 HOH HOH . C 3 HOH A 74 1074 1074 HOH HOH . C 3 HOH A 75 1075 1075 HOH HOH . C 3 HOH A 76 1076 1076 HOH HOH . C 3 HOH A 77 1077 1077 HOH HOH . C 3 HOH A 78 1078 1078 HOH HOH . C 3 HOH A 79 1079 1079 HOH HOH . C 3 HOH A 80 1080 1080 HOH HOH . C 3 HOH A 81 1081 1081 HOH HOH . C 3 HOH A 82 1082 1082 HOH HOH . C 3 HOH A 83 1083 1083 HOH HOH . C 3 HOH A 84 1084 1084 HOH HOH . C 3 HOH A 85 1085 1085 HOH HOH . C 3 HOH A 86 1086 1086 HOH HOH . C 3 HOH A 87 1087 1087 HOH HOH . C 3 HOH A 88 1088 1088 HOH HOH . C 3 HOH A 89 1089 1089 HOH HOH . C 3 HOH A 90 1090 1090 HOH HOH . C 3 HOH A 91 1091 1091 HOH HOH . C 3 HOH A 92 1092 1092 HOH HOH . C 3 HOH A 93 1093 1093 HOH HOH . C 3 HOH A 94 1094 1094 HOH HOH . C 3 HOH A 95 1095 1095 HOH HOH . C 3 HOH A 96 1096 1096 HOH HOH . C 3 HOH A 97 1097 1097 HOH HOH . C 3 HOH A 98 1098 1098 HOH HOH . C 3 HOH A 99 1099 1099 HOH HOH . C 3 HOH A 100 1100 1100 HOH HOH . C 3 HOH A 101 1101 1101 HOH HOH . C 3 HOH A 102 1102 1102 HOH HOH . C 3 HOH A 103 1103 1103 HOH HOH . C 3 HOH A 104 1104 1104 HOH HOH . C 3 HOH A 105 1105 1105 HOH HOH . C 3 HOH A 106 1106 1106 HOH HOH . C 3 HOH A 107 1107 1107 HOH HOH . C 3 HOH A 108 1108 1108 HOH HOH . C 3 HOH A 109 1109 1109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PY5 . . . B 2 26.691 3.739 -15.103 1 16.32 ? N1 PY5 413 A 1 HETATM 2 C C2 PY5 . . . B 2 26.404 4.867 -15.834 1 16.32 ? C2 PY5 413 A 1 HETATM 3 C C2A PY5 . . . B 2 27.113 4.794 -17.17 1 16.3 ? C2A PY5 413 A 1 HETATM 4 C C3 PY5 . . . B 2 25.541 5.872 -15.247 1 17.71 ? C3 PY5 413 A 1 HETATM 5 O O3 PY5 . . . B 2 25.357 6.912 -16.096 1 20.48 ? O3 PY5 413 A 1 HETATM 6 C C4 PY5 . . . B 2 24.965 5.755 -13.974 1 17.24 ? C4 PY5 413 A 1 HETATM 7 C C4A PY5 . . . B 2 24.054 6.846 -13.383 1 18.17 ? C4A PY5 413 A 1 HETATM 8 C C5 PY5 . . . B 2 25.356 4.524 -13.325 1 15.57 ? C5 PY5 413 A 1 HETATM 9 C C6 PY5 . . . B 2 26.176 3.538 -13.861 1 13.7 ? C6 PY5 413 A 1 HETATM 10 C C5A PY5 . . . B 2 24.867 4.126 -11.927 1 15.73 ? C5A PY5 413 A 1 HETATM 11 O O4P PY5 . . . B 2 23.666 4.635 -11.506 1 11.59 ? O4P PY5 413 A 1 HETATM 12 P P PY5 . . . B 2 22.77 3.977 -10.396 1 12.04 ? P PY5 413 A 1 HETATM 13 O O1P PY5 . . . B 2 22.283 2.704 -10.802 1 14.74 ? O1P PY5 413 A 1 HETATM 14 O O2P PY5 . . . B 2 21.85 5.084 -9.948 1 15.08 ? O2P PY5 413 A 1 HETATM 15 O O3P PY5 . . . B 2 23.728 3.656 -9.286 1 6.92 ? O3P PY5 413 A 1 HETATM 16 N N PY5 . . . B 2 24.522 8.151 -14.048 1 21.01 ? N PY5 413 A 1 HETATM 17 C CA PY5 . . . B 2 23.447 9.221 -13.968 1 20.52 ? CA PY5 413 A 1 HETATM 18 C C PY5 . . . B 2 23.937 10.505 -14.638 1 18.32 ? C PY5 413 A 1 HETATM 19 O O PY5 . . . B 2 24.577 10.243 -15.795 1 19.62 ? O PY5 413 A 1 HETATM 20 C CB PY5 . . . B 2 23.061 9.487 -12.518 1 21.26 ? CB PY5 413 A 1 HETATM 21 C CG PY5 . . . B 2 24.2 9.965 -11.631 1 24.27 ? CG PY5 413 A 1 HETATM 22 C CD PY5 . . . B 2 23.875 9.871 -10.152 1 25.01 ? CD PY5 413 A 1 HETATM 23 O OXT PY5 . . . B 2 23.76 11.699 -14.155 1 23.21 ? OXT PY5 413 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #