data_1CQ8 # _model_server_result.job_id L2mjd4R1QfWk5uEZU853ug _model_server_result.datetime_utc '2024-10-24 04:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1CQ8 # _exptl.entry_id 1CQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.315 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CQ8 _cell.length_a 157.72 _cell.length_b 85.57 _cell.length_c 78.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H23 N2 O7 P' _chem_comp.formula_weight 362.315 _chem_comp.id PY6 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 COMPLEXED WITH 2-AMINO-HEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PY6 doub 277 n y N1 C6 PY6 sing 278 n y C2 C2A PY6 sing 279 n n C2 C3 PY6 sing 280 n y C2A H2A1 PY6 sing 281 n n C2A H2A2 PY6 sing 282 n n C2A H2A3 PY6 sing 283 n n C3 O3 PY6 sing 284 n n C3 C4 PY6 doub 285 n y O3 HO3 PY6 sing 286 n n C4 C4A PY6 sing 287 n n C4 C5 PY6 sing 288 n y C4A N PY6 sing 289 n n C4A H4A1 PY6 sing 290 n n C4A H4A2 PY6 sing 291 n n C5 C6 PY6 doub 292 n y C5 C5A PY6 sing 293 n n C6 H6 PY6 sing 294 n n C5A O4P PY6 sing 295 n n C5A H5A1 PY6 sing 296 n n C5A H5A2 PY6 sing 297 n n O4P P PY6 sing 298 n n P O1P PY6 doub 299 n n P O2P PY6 sing 300 n n P O3P PY6 sing 301 n n O2P HOP2 PY6 sing 302 n n O3P HOP3 PY6 sing 303 n n N CA PY6 sing 304 n n N HN2 PY6 sing 305 n n CA C PY6 sing 306 n n CA CB PY6 sing 307 n n CA HA PY6 sing 308 n n C O PY6 doub 309 n n C OXT PY6 sing 310 n n CB CG PY6 sing 311 n n CB HB1 PY6 sing 312 n n CB HB2 PY6 sing 313 n n CG CD PY6 sing 314 n n CG HG1 PY6 sing 315 n n CG HG2 PY6 sing 316 n n CD CE PY6 sing 317 n n CD HD1 PY6 sing 318 n n CD HD2 PY6 sing 319 n n CE HE1 PY6 sing 320 n n CE HE2 PY6 sing 321 n n CE HE3 PY6 sing 322 n n OXT HXT PY6 sing 323 n n # _atom_sites.entry_id 1CQ8 _atom_sites.fract_transf_matrix[1][1] 0.00634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PY6 A 1 413 413 PY6 PY6 . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1071 1071 HOH HOH . C 3 HOH A 72 1072 1072 HOH HOH . C 3 HOH A 73 1073 1073 HOH HOH . C 3 HOH A 74 1074 1074 HOH HOH . C 3 HOH A 75 1075 1075 HOH HOH . C 3 HOH A 76 1076 1076 HOH HOH . C 3 HOH A 77 1077 1077 HOH HOH . C 3 HOH A 78 1078 1078 HOH HOH . C 3 HOH A 79 1079 1079 HOH HOH . C 3 HOH A 80 1080 1080 HOH HOH . C 3 HOH A 81 1081 1081 HOH HOH . C 3 HOH A 82 1082 1082 HOH HOH . C 3 HOH A 83 1083 1083 HOH HOH . C 3 HOH A 84 1084 1084 HOH HOH . C 3 HOH A 85 1085 1085 HOH HOH . C 3 HOH A 86 1086 1086 HOH HOH . C 3 HOH A 87 1087 1087 HOH HOH . C 3 HOH A 88 1088 1088 HOH HOH . C 3 HOH A 89 1089 1089 HOH HOH . C 3 HOH A 90 1090 1090 HOH HOH . C 3 HOH A 91 1091 1091 HOH HOH . C 3 HOH A 92 1092 1092 HOH HOH . C 3 HOH A 93 1093 1093 HOH HOH . C 3 HOH A 94 1094 1094 HOH HOH . C 3 HOH A 95 1095 1095 HOH HOH . C 3 HOH A 96 1096 1096 HOH HOH . C 3 HOH A 97 1097 1097 HOH HOH . C 3 HOH A 98 1098 1098 HOH HOH . C 3 HOH A 99 1099 1099 HOH HOH . C 3 HOH A 100 1100 1100 HOH HOH . C 3 HOH A 101 1101 1101 HOH HOH . C 3 HOH A 102 1102 1102 HOH HOH . C 3 HOH A 103 1103 1103 HOH HOH . C 3 HOH A 104 1104 1104 HOH HOH . C 3 HOH A 105 1105 1105 HOH HOH . C 3 HOH A 106 1106 1106 HOH HOH . C 3 HOH A 107 1107 1107 HOH HOH . C 3 HOH A 108 1108 1108 HOH HOH . C 3 HOH A 109 1109 1109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PY6 . . . B 2 26.65 3.747 -15.244 1 16.12 ? N1 PY6 413 A 1 HETATM 2 C C2 PY6 . . . B 2 26.354 4.903 -15.944 1 14.76 ? C2 PY6 413 A 1 HETATM 3 C C2A PY6 . . . B 2 27.026 4.858 -17.309 1 15.81 ? C2A PY6 413 A 1 HETATM 4 C C3 PY6 . . . B 2 25.522 5.89 -15.298 1 15.22 ? C3 PY6 413 A 1 HETATM 5 O O3 PY6 . . . B 2 25.323 6.956 -16.106 1 16.65 ? O3 PY6 413 A 1 HETATM 6 C C4 PY6 . . . B 2 24.991 5.735 -14.004 1 15.31 ? C4 PY6 413 A 1 HETATM 7 C C4A PY6 . . . B 2 24.116 6.792 -13.355 1 18.38 ? C4A PY6 413 A 1 HETATM 8 C C5 PY6 . . . B 2 25.381 4.487 -13.404 1 13.86 ? C5 PY6 413 A 1 HETATM 9 C C6 PY6 . . . B 2 26.176 3.516 -13.986 1 13.19 ? C6 PY6 413 A 1 HETATM 10 C C5A PY6 . . . B 2 24.931 4.077 -12.002 1 12.64 ? C5A PY6 413 A 1 HETATM 11 O O4P PY6 . . . B 2 23.812 4.682 -11.459 1 9.29 ? O4P PY6 413 A 1 HETATM 12 P P PY6 . . . B 2 22.873 3.959 -10.405 1 10.26 ? P PY6 413 A 1 HETATM 13 O O1P PY6 . . . B 2 22.442 2.672 -10.842 1 10.22 ? O1P PY6 413 A 1 HETATM 14 O O2P PY6 . . . B 2 21.917 5.031 -9.968 1 9.88 ? O2P PY6 413 A 1 HETATM 15 O O3P PY6 . . . B 2 23.782 3.609 -9.273 1 6.16 ? O3P PY6 413 A 1 HETATM 16 N N PY6 . . . B 2 24.595 8.077 -13.998 1 21.8 ? N PY6 413 A 1 HETATM 17 C CA PY6 . . . B 2 23.535 9.131 -13.92 1 21.02 ? CA PY6 413 A 1 HETATM 18 C C PY6 . . . B 2 24.062 10.39 -14.577 1 19.18 ? C PY6 413 A 1 HETATM 19 O O PY6 . . . B 2 24.596 10.109 -15.783 1 21.09 ? O PY6 413 A 1 HETATM 20 C CB PY6 . . . B 2 23.122 9.388 -12.472 1 22.78 ? CB PY6 413 A 1 HETATM 21 C CG PY6 . . . B 2 24.257 9.786 -11.535 1 25.67 ? CG PY6 413 A 1 HETATM 22 C CD PY6 . . . B 2 23.832 9.744 -10.073 1 26.6 ? CD PY6 413 A 1 HETATM 23 C CE PY6 . . . B 2 23.836 8.344 -9.482 1 25.15 ? CE PY6 413 A 1 HETATM 24 O OXT PY6 . . . B 2 24.011 11.57 -14.05 1 22.09 ? OXT PY6 413 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #