data_1CQI # _model_server_result.job_id tF5ka7M6FCscnqJpMRWB7g _model_server_result.datetime_utc '2024-11-25 08:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 1CQI # _exptl.entry_id 1CQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CQI _cell.length_a 99.86 _cell.length_b 99.86 _cell.length_c 407.15 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQI _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 123 A CYS 123 1_555 F S1P COA . A COA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale2 C SG CYS 123 D CYS 123 1_555 J S1P COA . D COA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 B O ASN 199 B ASN 199 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 B OD2 ASP 213 B ASP 213 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc3 G MG MG . B MG 501 1_555 H O3B ADP . B ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 G MG MG . B MG 501 1_555 H O2A ADP . B ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc5 D O ASN 199 E ASN 199 1_555 K MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 D OD2 ASP 213 E ASP 213 1_555 K MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc7 K MG MG . E MG 502 1_555 L O3B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 K MG MG . E MG 502 1_555 L O2A ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 114 n y N1A C6A COA doub 115 n y C2A N3A COA doub 116 n y C2A H2A COA sing 117 n n N3A C4A COA sing 118 n y C4A C5A COA doub 119 n y C4A N9A COA sing 120 n y C5A C6A COA sing 121 n y C5A N7A COA sing 122 n y C6A N6A COA sing 123 n n N6A H61A COA sing 124 n n N6A H62A COA sing 125 n n N7A C8A COA doub 126 n y C8A N9A COA sing 127 n y C8A H8A COA sing 128 n n N9A C1B COA sing 129 n n C1B C2B COA sing 130 n n C1B O4B COA sing 131 n n C1B H1B COA sing 132 n n C2B O2B COA sing 133 n n C2B C3B COA sing 134 n n C2B H2B COA sing 135 n n O2B HO2A COA sing 136 n n C3B O3B COA sing 137 n n C3B C4B COA sing 138 n n C3B H3B COA sing 139 n n O3B P3B COA sing 140 n n P3B O7A COA doub 141 n n P3B O8A COA sing 142 n n P3B O9A COA sing 143 n n O8A HOA8 COA sing 144 n n O9A HOA9 COA sing 145 n n C4B O4B COA sing 146 n n C4B C5B COA sing 147 n n C4B H4B COA sing 148 n n C5B O5B COA sing 149 n n C5B H51A COA sing 150 n n C5B H52A COA sing 151 n n O5B P1A COA sing 152 n n P1A O1A COA doub 153 n n P1A O2A COA sing 154 n n P1A O3A COA sing 155 n n O2A HOA2 COA sing 156 n n O3A P2A COA sing 157 n n P2A O4A COA doub 158 n n P2A O5A COA sing 159 n n P2A O6A COA sing 160 n n O5A HOA5 COA sing 161 n n O6A CCP COA sing 162 n n CBP CCP COA sing 163 n n CBP CDP COA sing 164 n n CBP CEP COA sing 165 n n CBP CAP COA sing 166 n n CCP H121 COA sing 167 n n CCP H122 COA sing 168 n n CDP H131 COA sing 169 n n CDP H132 COA sing 170 n n CDP H133 COA sing 171 n n CEP H141 COA sing 172 n n CEP H142 COA sing 173 n n CEP H143 COA sing 174 n n CAP OAP COA sing 175 n n CAP C9P COA sing 176 n n CAP H10 COA sing 177 n n OAP HO1 COA sing 178 n n C9P O9P COA doub 179 n n C9P N8P COA sing 180 n n N8P C7P COA sing 181 n n N8P HN8 COA sing 182 n n C7P C6P COA sing 183 n n C7P H71 COA sing 184 n n C7P H72 COA sing 185 n n C6P C5P COA sing 186 n n C6P H61 COA sing 187 n n C6P H62 COA sing 188 n n C5P O5P COA doub 189 n n C5P N4P COA sing 190 n n N4P C3P COA sing 191 n n N4P HN4 COA sing 192 n n C3P C2P COA sing 193 n n C3P H31 COA sing 194 n n C3P H32 COA sing 195 n n C2P S1P COA sing 196 n n C2P H21 COA sing 197 n n C2P H22 COA sing 198 n n S1P HS1 COA sing 199 n n # _atom_sites.entry_id 1CQI _atom_sites.fract_transf_matrix[1][1] 0.010014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 601 601 PO4 PO4 . F 4 COA A 1 701 701 COA COA . G 5 MG B 1 501 501 MG MG . H 6 ADP B 1 801 801 ADP ADP . I 3 PO4 D 1 602 602 PO4 PO4 . J 4 COA D 1 702 702 COA COA . K 5 MG E 1 502 502 MG MG . L 6 ADP E 1 802 802 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 4 31.323 62.855 49.696 1 49.32 ? N1A COA 701 A 1 HETATM 2 C C2A COA . . . F 4 30.571 63.923 49.93 1 48.1 ? C2A COA 701 A 1 HETATM 3 N N3A COA . . . F 4 29.341 64.003 50.464 1 49.23 ? N3A COA 701 A 1 HETATM 4 C C4A COA . . . F 4 28.858 62.785 50.782 1 48.27 ? C4A COA 701 A 1 HETATM 5 C C5A COA . . . F 4 29.509 61.579 50.594 1 48.97 ? C5A COA 701 A 1 HETATM 6 C C6A COA . . . F 4 30.825 61.634 50.018 1 49.56 ? C6A COA 701 A 1 HETATM 7 N N6A COA . . . F 4 31.594 60.553 49.783 1 51.81 ? N6A COA 701 A 1 HETATM 8 N N7A COA . . . F 4 28.71 60.524 51.026 1 48.39 ? N7A COA 701 A 1 HETATM 9 C C8A COA . . . F 4 27.619 61.106 51.466 1 48.96 ? C8A COA 701 A 1 HETATM 10 N N9A COA . . . F 4 27.638 62.472 51.364 1 47.81 ? N9A COA 701 A 1 HETATM 11 C C1B COA . . . F 4 26.585 63.413 51.791 1 47.61 ? C1B COA 701 A 1 HETATM 12 C C2B COA . . . F 4 25.155 62.877 51.865 1 47.27 ? C2B COA 701 A 1 HETATM 13 O O2B COA . . . F 4 24.604 62.664 50.571 1 49 ? O2B COA 701 A 1 HETATM 14 C C3B COA . . . F 4 24.473 63.962 52.721 1 45.52 ? C3B COA 701 A 1 HETATM 15 O O3B COA . . . F 4 24.009 65.08 51.944 1 46.61 ? O3B COA 701 A 1 HETATM 16 P P3B COA . . . F 4 22.443 65.225 51.574 1 48.76 ? P3B COA 701 A 1 HETATM 17 O O7A COA . . . F 4 22.17 66.685 51.245 1 45.39 ? O7A COA 701 A 1 HETATM 18 O O8A COA . . . F 4 22.271 64.293 50.359 1 48.57 ? O8A COA 701 A 1 HETATM 19 O O9A COA . . . F 4 21.756 64.778 52.869 1 48.49 ? O9A COA 701 A 1 HETATM 20 C C4B COA . . . F 4 25.601 64.423 53.65 1 43.22 ? C4B COA 701 A 1 HETATM 21 O O4B COA . . . F 4 26.818 63.809 53.129 1 45.05 ? O4B COA 701 A 1 HETATM 22 C C5B COA . . . F 4 25.44 64.09 55.116 1 42.01 ? C5B COA 701 A 1 HETATM 23 O O5B COA . . . F 4 24.34 64.812 55.676 1 43.05 ? O5B COA 701 A 1 HETATM 24 P P1A COA . . . F 4 23.462 64.191 56.854 1 43.11 ? P1A COA 701 A 1 HETATM 25 O O1A COA . . . F 4 22.356 65.133 57.171 1 43.8 ? O1A COA 701 A 1 HETATM 26 O O2A COA . . . F 4 23.117 62.812 56.431 1 44.77 ? O2A COA 701 A 1 HETATM 27 O O3A COA . . . F 4 24.513 64.04 58.082 1 41.65 ? O3A COA 701 A 1 HETATM 28 P P2A COA . . . F 4 24.532 65.02 59.366 1 42.08 ? P2A COA 701 A 1 HETATM 29 O O4A COA . . . F 4 24.925 66.355 58.715 1 41.33 ? O4A COA 701 A 1 HETATM 30 O O5A COA . . . F 4 23.142 64.951 59.994 1 42.85 ? O5A COA 701 A 1 HETATM 31 O O6A COA . . . F 4 25.572 64.49 60.348 1 41.73 ? O6A COA 701 A 1 HETATM 32 C CBP COA . . . F 4 28.092 64.024 60.663 1 44.34 ? CBP COA 701 A 1 HETATM 33 C CCP COA . . . F 4 26.85 64.093 59.819 1 42.64 ? CCP COA 701 A 1 HETATM 34 C CDP COA . . . F 4 28.26 65.373 61.311 1 43.01 ? CDP COA 701 A 1 HETATM 35 C CEP COA . . . F 4 29.148 63.724 59.643 1 39.24 ? CEP COA 701 A 1 HETATM 36 C CAP COA . . . F 4 27.949 62.902 61.711 1 46.29 ? CAP COA 701 A 1 HETATM 37 O OAP COA . . . F 4 28.371 61.6 61.188 1 49.19 ? OAP COA 701 A 1 HETATM 38 C C9P COA . . . F 4 28.881 63.142 62.875 1 47.05 ? C9P COA 701 A 1 HETATM 39 O O9P COA . . . F 4 29.954 62.554 62.886 1 48.02 ? O9P COA 701 A 1 HETATM 40 N N8P COA . . . F 4 28.494 63.948 63.874 1 49.99 ? N8P COA 701 A 1 HETATM 41 C C7P COA . . . F 4 29.352 64.211 64.995 1 56.33 ? C7P COA 701 A 1 HETATM 42 C C6P COA . . . F 4 28.659 63.893 66.306 1 64.82 ? C6P COA 701 A 1 HETATM 43 C C5P COA . . . F 4 29.265 64.698 67.491 1 69.28 ? C5P COA 701 A 1 HETATM 44 O O5P COA . . . F 4 29.743 64.188 68.528 1 70.17 ? O5P COA 701 A 1 HETATM 45 N N4P COA . . . F 4 29.163 66.006 67.157 1 73.85 ? N4P COA 701 A 1 HETATM 46 C C3P COA . . . F 4 29.612 67.191 67.978 1 77.15 ? C3P COA 701 A 1 HETATM 47 C C2P COA . . . F 4 30.596 68.077 67.163 1 76.91 ? C2P COA 701 A 1 HETATM 48 S S1P COA . . . F 4 32.039 67.227 66.341 1 74.88 ? S1P COA 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #