data_1CQI # _model_server_result.job_id raHGSGbab_mYuQsNFFHjBQ _model_server_result.datetime_utc '2024-11-22 06:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 1CQI # _exptl.entry_id 1CQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CQI _cell.length_a 99.86 _cell.length_b 99.86 _cell.length_c 407.15 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQI _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 123 A CYS 123 1_555 F S1P COA . A COA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale2 C SG CYS 123 D CYS 123 1_555 J S1P COA . D COA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 B O ASN 199 B ASN 199 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 B OD2 ASP 213 B ASP 213 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc3 G MG MG . B MG 501 1_555 H O3B ADP . B ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 G MG MG . B MG 501 1_555 H O2A ADP . B ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc5 D O ASN 199 E ASN 199 1_555 K MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 D OD2 ASP 213 E ASP 213 1_555 K MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc7 K MG MG . E MG 502 1_555 L O3B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 K MG MG . E MG 502 1_555 L O2A ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1CQI _atom_sites.fract_transf_matrix[1][1] 0.010014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 601 601 PO4 PO4 . F 4 COA A 1 701 701 COA COA . G 5 MG B 1 501 501 MG MG . H 6 ADP B 1 801 801 ADP ADP . I 3 PO4 D 1 602 602 PO4 PO4 . J 4 COA D 1 702 702 COA COA . K 5 MG E 1 502 502 MG MG . L 6 ADP E 1 802 802 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 6 40.651 32.187 82.714 1 28.73 ? PB ADP 801 B 1 HETATM 2 O O1B ADP . . . H 6 41.383 32.011 84.036 1 29.53 ? O1B ADP 801 B 1 HETATM 3 O O2B ADP . . . H 6 39.376 32.966 82.904 1 29.4 ? O2B ADP 801 B 1 HETATM 4 O O3B ADP . . . H 6 41.457 32.877 81.626 1 29.03 ? O3B ADP 801 B 1 HETATM 5 P PA ADP . . . H 6 41.068 29.849 81.143 1 29.09 ? PA ADP 801 B 1 HETATM 6 O O1A ADP . . . H 6 40.102 29.465 80.094 1 29.7 ? O1A ADP 801 B 1 HETATM 7 O O2A ADP . . . H 6 42.368 30.518 80.748 1 28.25 ? O2A ADP 801 B 1 HETATM 8 O O3A ADP . . . H 6 40.263 30.713 82.232 1 28.5 ? O3A ADP 801 B 1 HETATM 9 O O5' ADP . . . H 6 41.373 28.495 81.925 1 31.28 ? O5' ADP 801 B 1 HETATM 10 C C5' ADP . . . H 6 42.289 28.422 83.065 1 33.14 ? C5' ADP 801 B 1 HETATM 11 C C4' ADP . . . H 6 43.155 27.133 83.044 1 33.29 ? C4' ADP 801 B 1 HETATM 12 O O4' ADP . . . H 6 42.296 25.939 82.987 1 31.64 ? O4' ADP 801 B 1 HETATM 13 C C3' ADP . . . H 6 44.059 27.009 81.812 1 32.9 ? C3' ADP 801 B 1 HETATM 14 O O3' ADP . . . H 6 45.247 27.819 81.952 1 34.79 ? O3' ADP 801 B 1 HETATM 15 C C2' ADP . . . H 6 44.224 25.506 81.716 1 31.45 ? C2' ADP 801 B 1 HETATM 16 O O2' ADP . . . H 6 45.245 25.026 82.531 1 33.36 ? O2' ADP 801 B 1 HETATM 17 C C1' ADP . . . H 6 42.898 24.954 82.181 1 29.91 ? C1' ADP 801 B 1 HETATM 18 N N9 ADP . . . H 6 42.011 24.662 81.063 1 28.89 ? N9 ADP 801 B 1 HETATM 19 C C8 ADP . . . H 6 41.061 25.465 80.466 1 28.55 ? C8 ADP 801 B 1 HETATM 20 N N7 ADP . . . H 6 40.427 24.904 79.468 1 28.87 ? N7 ADP 801 B 1 HETATM 21 C C5 ADP . . . H 6 40.989 23.643 79.393 1 30.02 ? C5 ADP 801 B 1 HETATM 22 C C6 ADP . . . H 6 40.763 22.518 78.531 1 30.18 ? C6 ADP 801 B 1 HETATM 23 N N6 ADP . . . H 6 39.856 22.507 77.54 1 30.22 ? N6 ADP 801 B 1 HETATM 24 N N1 ADP . . . H 6 41.518 21.386 78.731 1 30.99 ? N1 ADP 801 B 1 HETATM 25 C C2 ADP . . . H 6 42.446 21.386 79.735 1 30.36 ? C2 ADP 801 B 1 HETATM 26 N N3 ADP . . . H 6 42.746 22.377 80.608 1 29.49 ? N3 ADP 801 B 1 HETATM 27 C C4 ADP . . . H 6 41.98 23.484 80.379 1 29.32 ? C4 ADP 801 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #