data_1CR2 # _model_server_result.job_id ovG0SquEDJOzsUzFYhwv4w _model_server_result.datetime_utc '2024-10-19 01:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1CR2 # _exptl.entry_id 1CR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1CR2 _cell.length_a 80.172 _cell.length_b 80.172 _cell.length_c 85.709 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 28.569667 3 'crystal symmetry operation' 3_555 -x+y,-x,z+2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 57.139333 4 'crystal symmetry operation' 4_555 -x,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 0 0 42.8545 5 'crystal symmetry operation' 5_555 y,-x+y,z+5/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 71.424167 6 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 14.284833 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 1CR2 _atom_sites.fract_transf_matrix[1][1] 0.012473 _atom_sites.fract_transf_matrix[1][2] 0.007201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 601 SO4 SO4 . C 2 SO4 A 1 602 602 SO4 SO4 . D 3 DTP A 1 600 600 DTP DTP . E 4 HOH A 1 603 603 HOH HOH . E 4 HOH A 2 604 604 HOH HOH . E 4 HOH A 3 605 605 HOH HOH . E 4 HOH A 4 606 606 HOH HOH . E 4 HOH A 5 608 608 HOH HOH . E 4 HOH A 6 609 609 HOH HOH . E 4 HOH A 7 610 610 HOH HOH . E 4 HOH A 8 611 611 HOH HOH . E 4 HOH A 9 612 612 HOH HOH . E 4 HOH A 10 613 613 HOH HOH . E 4 HOH A 11 615 615 HOH HOH . E 4 HOH A 12 616 616 HOH HOH . E 4 HOH A 13 617 617 HOH HOH . E 4 HOH A 14 618 618 HOH HOH . E 4 HOH A 15 619 619 HOH HOH . E 4 HOH A 16 621 621 HOH HOH . E 4 HOH A 17 622 622 HOH HOH . E 4 HOH A 18 625 625 HOH HOH . E 4 HOH A 19 626 626 HOH HOH . E 4 HOH A 20 630 630 HOH HOH . E 4 HOH A 21 631 631 HOH HOH . E 4 HOH A 22 632 632 HOH HOH . E 4 HOH A 23 633 633 HOH HOH . E 4 HOH A 24 637 637 HOH HOH . E 4 HOH A 25 638 638 HOH HOH . E 4 HOH A 26 641 641 HOH HOH . E 4 HOH A 27 643 643 HOH HOH . E 4 HOH A 28 644 644 HOH HOH . E 4 HOH A 29 646 646 HOH HOH . E 4 HOH A 30 647 647 HOH HOH . E 4 HOH A 31 648 648 HOH HOH . E 4 HOH A 32 650 650 HOH HOH . E 4 HOH A 33 651 651 HOH HOH . E 4 HOH A 34 652 652 HOH HOH . E 4 HOH A 35 653 653 HOH HOH . E 4 HOH A 36 654 654 HOH HOH . E 4 HOH A 37 655 655 HOH HOH . E 4 HOH A 38 656 656 HOH HOH . E 4 HOH A 39 657 657 HOH HOH . E 4 HOH A 40 658 658 HOH HOH . E 4 HOH A 41 659 659 HOH HOH . E 4 HOH A 42 660 660 HOH HOH . E 4 HOH A 43 661 661 HOH HOH . E 4 HOH A 44 662 662 HOH HOH . E 4 HOH A 45 663 663 HOH HOH . E 4 HOH A 46 664 664 HOH HOH . E 4 HOH A 47 665 665 HOH HOH . E 4 HOH A 48 666 666 HOH HOH . E 4 HOH A 49 667 667 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . D 3 -11.748 26.547 38.8 0.77 39.13 ? PG DTP 600 A 1 HETATM 2 O O1G DTP . . . D 3 -11.483 27.643 37.837 0.77 39.6 ? O1G DTP 600 A 1 HETATM 3 O O2G DTP . . . D 3 -11.412 25.377 38.122 0.77 44.19 ? O2G DTP 600 A 1 HETATM 4 O O3G DTP . . . D 3 -13.22 26.528 39.3 0.77 37.39 ? O3G DTP 600 A 1 HETATM 5 P PB DTP . . . D 3 -9.548 27.482 40.751 0.77 24.78 ? PB DTP 600 A 1 HETATM 6 O O1B DTP . . . D 3 -9.464 28.801 40.014 0.77 37.71 ? O1B DTP 600 A 1 HETATM 7 O O2B DTP . . . D 3 -8.389 26.7 40.901 0.77 26.13 ? O2B DTP 600 A 1 HETATM 8 O O3B DTP . . . D 3 -10.705 26.514 40.141 0.77 31.55 ? O3B DTP 600 A 1 HETATM 9 P PA DTP . . . D 3 -10.606 29.315 42.745 0.77 32.76 ? PA DTP 600 A 1 HETATM 10 O O1A DTP . . . D 3 -9.347 30.073 42.682 0.77 23.23 ? O1A DTP 600 A 1 HETATM 11 O O2A DTP . . . D 3 -11.732 29.919 42.083 0.77 29.92 ? O2A DTP 600 A 1 HETATM 12 O O3A DTP . . . D 3 -10.102 27.862 42.226 0.77 32.73 ? O3A DTP 600 A 1 HETATM 13 O O5' DTP . . . D 3 -10.98 29.093 44.168 0.77 38.97 ? O5' DTP 600 A 1 HETATM 14 C C5' DTP . . . D 3 -12.248 28.456 44.515 0.77 40.77 ? C5' DTP 600 A 1 HETATM 15 C C4' DTP . . . D 3 -12.841 28.745 45.914 0.77 41.49 ? C4' DTP 600 A 1 HETATM 16 O O4' DTP . . . D 3 -12.105 28.089 46.97 0.77 41.47 ? O4' DTP 600 A 1 HETATM 17 C C3' DTP . . . D 3 -12.932 30.206 46.316 0.77 39.55 ? C3' DTP 600 A 1 HETATM 18 O O3' DTP . . . D 3 -14.235 30.509 46.776 0.77 34.84 ? O3' DTP 600 A 1 HETATM 19 C C2' DTP . . . D 3 -11.873 30.406 47.39 0.77 40.05 ? C2' DTP 600 A 1 HETATM 20 C C1' DTP . . . D 3 -11.463 29.013 47.817 0.77 35.63 ? C1' DTP 600 A 1 HETATM 21 N N9 DTP . . . D 3 -10.033 28.765 47.706 0.77 35.59 ? N9 DTP 600 A 1 HETATM 22 C C8 DTP . . . D 3 -9.05 29.022 46.82 0.77 31 ? C8 DTP 600 A 1 HETATM 23 N N7 DTP . . . D 3 -7.876 28.588 47.191 0.77 29.55 ? N7 DTP 600 A 1 HETATM 24 C C5 DTP . . . D 3 -8.107 28.007 48.406 0.77 34.49 ? C5 DTP 600 A 1 HETATM 25 C C6 DTP . . . D 3 -7.25 27.357 49.336 0.77 37.44 ? C6 DTP 600 A 1 HETATM 26 N N6 DTP . . . D 3 -5.951 27.183 49.146 0.77 37.13 ? N6 DTP 600 A 1 HETATM 27 N N1 DTP . . . D 3 -7.799 26.889 50.477 0.77 34.96 ? N1 DTP 600 A 1 HETATM 28 C C2 DTP . . . D 3 -9.111 27.063 50.673 0.77 34.67 ? C2 DTP 600 A 1 HETATM 29 N N3 DTP . . . D 3 -10.001 27.653 49.87 0.77 37.61 ? N3 DTP 600 A 1 HETATM 30 C C4 DTP . . . D 3 -9.423 28.118 48.751 0.77 35.73 ? C4 DTP 600 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #