data_1CRC # _model_server_result.job_id WMtQg41v6zsNAjKcQ2qhAQ _model_server_result.datetime_utc '2024-11-08 16:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1crc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":105}' # _entry.id 1CRC # _exptl.entry_id 1CRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CRC _cell.length_a 55.62 _cell.length_b 105.01 _cell.length_c 35.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale2 A SG CYS 15 A CYS 14 1_555 C CAB HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 A SG CYS 18 A CYS 17 1_555 C CAC HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale5 B SG CYS 15 B CYS 14 1_555 D CAB HEC . B HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? covale ? covale6 B SG CYS 18 B CYS 17 1_555 D CAC HEC . B HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc1 A NE2 HIS 19 A HIS 18 1_555 C FE HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A SD MET 81 A MET 80 1_555 C FE HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc3 B NE2 HIS 19 B HIS 18 1_555 D FE HEC . B HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc4 B SD MET 81 B MET 80 1_555 D FE HEC . B HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 135 n n FE NB HEC sing 136 n n FE NC HEC sing 137 n n FE ND HEC sing 138 n n CHA C1A HEC doub 139 n n CHA C4D HEC sing 140 n n CHA HHA HEC sing 141 n n CHB C4A HEC doub 142 n n CHB C1B HEC sing 143 n n CHB HHB HEC sing 144 n n CHC C4B HEC doub 145 n n CHC C1C HEC sing 146 n n CHC HHC HEC sing 147 n n CHD C4C HEC doub 148 n n CHD C1D HEC sing 149 n n CHD HHD HEC sing 150 n n NA C1A HEC sing 151 n y NA C4A HEC sing 152 n y C1A C2A HEC sing 153 n y C2A C3A HEC doub 154 n y C2A CAA HEC sing 155 n n C3A C4A HEC sing 156 n y C3A CMA HEC sing 157 n n CMA HMA1 HEC sing 158 n n CMA HMA2 HEC sing 159 n n CMA HMA3 HEC sing 160 n n CAA CBA HEC sing 161 n n CAA HAA1 HEC sing 162 n n CAA HAA2 HEC sing 163 n n CBA CGA HEC sing 164 n n CBA HBA1 HEC sing 165 n n CBA HBA2 HEC sing 166 n n CGA O1A HEC doub 167 n n CGA O2A HEC sing 168 n n O2A H2A HEC sing 169 n n NB C1B HEC sing 170 n y NB C4B HEC sing 171 n y C1B C2B HEC doub 172 n y C2B C3B HEC sing 173 n y C2B CMB HEC sing 174 n n C3B C4B HEC sing 175 n y C3B CAB HEC doub 176 e n CMB HMB1 HEC sing 177 n n CMB HMB2 HEC sing 178 n n CMB HMB3 HEC sing 179 n n CAB CBB HEC sing 180 n n CAB HAB HEC sing 181 n n CBB HBB1 HEC sing 182 n n CBB HBB2 HEC sing 183 n n CBB HBB3 HEC sing 184 n n NC C1C HEC sing 185 n y NC C4C HEC sing 186 n y C1C C2C HEC doub 187 n y C2C C3C HEC sing 188 n y C2C CMC HEC sing 189 n n C3C C4C HEC sing 190 n y C3C CAC HEC doub 191 e n CMC HMC1 HEC sing 192 n n CMC HMC2 HEC sing 193 n n CMC HMC3 HEC sing 194 n n CAC CBC HEC sing 195 n n CAC HAC HEC sing 196 n n CBC HBC1 HEC sing 197 n n CBC HBC2 HEC sing 198 n n CBC HBC3 HEC sing 199 n n ND C1D HEC sing 200 n y ND C4D HEC sing 201 n y C1D C2D HEC doub 202 n y C2D C3D HEC sing 203 n y C2D CMD HEC sing 204 n n C3D C4D HEC doub 205 n y C3D CAD HEC sing 206 n n CMD HMD1 HEC sing 207 n n CMD HMD2 HEC sing 208 n n CMD HMD3 HEC sing 209 n n CAD CBD HEC sing 210 n n CAD HAD1 HEC sing 211 n n CAD HAD2 HEC sing 212 n n CBD CGD HEC sing 213 n n CBD HBD1 HEC sing 214 n n CBD HBD2 HEC sing 215 n n CGD O1D HEC doub 216 n n CGD O2D HEC sing 217 n n O2D H2D HEC sing 218 n n # _atom_sites.entry_id 1CRC _atom_sites.fract_transf_matrix[1][1] 0.017979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 105 105 HEC HEM . D 2 HEC B 1 105 105 HEC HEM . E 3 HOH A 1 106 106 HOH HOH . E 3 HOH A 2 107 107 HOH HOH . E 3 HOH A 3 108 108 HOH HOH . E 3 HOH A 4 109 109 HOH HOH . E 3 HOH A 5 110 110 HOH HOH . E 3 HOH A 6 111 111 HOH HOH . E 3 HOH A 7 112 112 HOH HOH . E 3 HOH A 8 113 113 HOH HOH . E 3 HOH A 9 114 114 HOH HOH . E 3 HOH A 10 115 115 HOH HOH . E 3 HOH A 11 116 116 HOH HOH . E 3 HOH A 12 117 117 HOH HOH . E 3 HOH A 13 118 118 HOH HOH . E 3 HOH A 14 119 119 HOH HOH . E 3 HOH A 15 120 120 HOH HOH . E 3 HOH A 16 121 121 HOH HOH . E 3 HOH A 17 122 122 HOH HOH . E 3 HOH A 18 123 123 HOH HOH . E 3 HOH A 19 124 124 HOH HOH . E 3 HOH A 20 125 125 HOH HOH . E 3 HOH A 21 126 127 HOH HOH . E 3 HOH A 22 127 129 HOH HOH . E 3 HOH A 23 128 130 HOH HOH . E 3 HOH A 24 129 131 HOH HOH . E 3 HOH A 25 130 132 HOH HOH . E 3 HOH A 26 131 133 HOH HOH . E 3 HOH A 27 132 134 HOH HOH . E 3 HOH A 28 133 135 HOH HOH . E 3 HOH A 29 134 136 HOH HOH . E 3 HOH A 30 135 137 HOH HOH . E 3 HOH A 31 136 138 HOH HOH . E 3 HOH A 32 137 139 HOH HOH . E 3 HOH A 33 138 140 HOH HOH . E 3 HOH A 34 139 141 HOH HOH . E 3 HOH A 35 140 142 HOH HOH . E 3 HOH A 36 141 143 HOH HOH . E 3 HOH A 37 142 144 HOH HOH . E 3 HOH A 38 143 145 HOH HOH . E 3 HOH A 39 144 146 HOH HOH . E 3 HOH A 40 145 147 HOH HOH . E 3 HOH A 41 146 148 HOH HOH . E 3 HOH A 42 147 149 HOH HOH . E 3 HOH A 43 148 150 HOH HOH . E 3 HOH A 44 149 151 HOH HOH . E 3 HOH A 45 150 152 HOH HOH . E 3 HOH A 46 151 153 HOH HOH . E 3 HOH A 47 152 154 HOH HOH . E 3 HOH A 48 153 155 HOH HOH . E 3 HOH A 49 154 156 HOH HOH . E 3 HOH A 50 155 157 HOH HOH . E 3 HOH A 51 156 158 HOH HOH . E 3 HOH A 52 157 160 HOH HOH . E 3 HOH A 53 158 161 HOH HOH . E 3 HOH A 54 159 162 HOH HOH . E 3 HOH A 55 160 163 HOH HOH . E 3 HOH A 56 161 164 HOH HOH . E 3 HOH A 57 162 165 HOH HOH . E 3 HOH A 58 163 166 HOH HOH . E 3 HOH A 59 164 167 HOH HOH . E 3 HOH A 60 165 168 HOH HOH . E 3 HOH A 61 166 169 HOH HOH . E 3 HOH A 62 167 170 HOH HOH . E 3 HOH A 63 168 171 HOH HOH . E 3 HOH A 64 169 172 HOH HOH . E 3 HOH A 65 170 173 HOH HOH . E 3 HOH A 66 171 174 HOH HOH . F 3 HOH B 1 106 126 HOH HOH . F 3 HOH B 2 107 128 HOH HOH . F 3 HOH B 3 108 159 HOH HOH . F 3 HOH B 4 109 106 HOH HOH . F 3 HOH B 5 110 107 HOH HOH . F 3 HOH B 6 111 108 HOH HOH . F 3 HOH B 7 112 109 HOH HOH . F 3 HOH B 8 113 110 HOH HOH . F 3 HOH B 9 114 111 HOH HOH . F 3 HOH B 10 115 112 HOH HOH . F 3 HOH B 11 116 113 HOH HOH . F 3 HOH B 12 117 114 HOH HOH . F 3 HOH B 13 118 115 HOH HOH . F 3 HOH B 14 119 116 HOH HOH . F 3 HOH B 15 120 117 HOH HOH . F 3 HOH B 16 121 118 HOH HOH . F 3 HOH B 17 122 119 HOH HOH . F 3 HOH B 18 123 120 HOH HOH . F 3 HOH B 19 124 121 HOH HOH . F 3 HOH B 20 125 122 HOH HOH . F 3 HOH B 21 126 123 HOH HOH . F 3 HOH B 22 127 124 HOH HOH . F 3 HOH B 23 128 125 HOH HOH . F 3 HOH B 24 129 126 HOH HOH . F 3 HOH B 25 130 127 HOH HOH . F 3 HOH B 26 131 128 HOH HOH . F 3 HOH B 27 132 129 HOH HOH . F 3 HOH B 28 133 130 HOH HOH . F 3 HOH B 29 134 131 HOH HOH . F 3 HOH B 30 135 132 HOH HOH . F 3 HOH B 31 136 133 HOH HOH . F 3 HOH B 32 137 134 HOH HOH . F 3 HOH B 33 138 135 HOH HOH . F 3 HOH B 34 139 136 HOH HOH . F 3 HOH B 35 140 137 HOH HOH . F 3 HOH B 36 141 138 HOH HOH . F 3 HOH B 37 142 139 HOH HOH . F 3 HOH B 38 143 140 HOH HOH . F 3 HOH B 39 144 141 HOH HOH . F 3 HOH B 40 145 142 HOH HOH . F 3 HOH B 41 146 143 HOH HOH . F 3 HOH B 42 147 144 HOH HOH . F 3 HOH B 43 148 145 HOH HOH . F 3 HOH B 44 149 146 HOH HOH . F 3 HOH B 45 150 147 HOH HOH . F 3 HOH B 46 151 148 HOH HOH . F 3 HOH B 47 152 149 HOH HOH . F 3 HOH B 48 153 150 HOH HOH . F 3 HOH B 49 154 151 HOH HOH . F 3 HOH B 50 155 152 HOH HOH . F 3 HOH B 51 156 153 HOH HOH . F 3 HOH B 52 157 154 HOH HOH . F 3 HOH B 53 158 155 HOH HOH . F 3 HOH B 54 159 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 26.826 8.215 14.199 1 16.33 ? FE HEC 105 B 1 HETATM 2 C CHA HEC . . . D 2 25.678 8.283 10.996 1 16.47 ? CHA HEC 105 B 1 HETATM 3 C CHB HEC . . . D 2 26.861 4.802 14.191 1 15.96 ? CHB HEC 105 B 1 HETATM 4 C CHC HEC . . . D 2 28.889 8.27 16.865 1 16.36 ? CHC HEC 105 B 1 HETATM 5 C CHD HEC . . . D 2 25.704 11.285 14.78 1 15.31 ? CHD HEC 105 B 1 HETATM 6 N NA HEC . . . D 2 26.3 6.825 12.833 1 16.7 ? NA HEC 105 B 1 HETATM 7 C C1A HEC . . . D 2 25.918 7.01 11.506 1 16.11 ? C1A HEC 105 B 1 HETATM 8 C C2A HEC . . . D 2 25.836 5.741 10.854 1 15.44 ? C2A HEC 105 B 1 HETATM 9 C C3A HEC . . . D 2 26.19 4.8 11.742 1 16.3 ? C3A HEC 105 B 1 HETATM 10 C C4A HEC . . . D 2 26.521 5.431 13.003 1 16.59 ? C4A HEC 105 B 1 HETATM 11 C CMA HEC . . . D 2 26.289 3.262 11.66 1 16.41 ? CMA HEC 105 B 1 HETATM 12 C CAA HEC . . . D 2 25.378 5.547 9.401 1 13.78 ? CAA HEC 105 B 1 HETATM 13 C CBA HEC . . . D 2 23.868 5.142 9.278 1 11.62 ? CBA HEC 105 B 1 HETATM 14 C CGA HEC . . . D 2 23.478 4.708 7.911 1 10.65 ? CGA HEC 105 B 1 HETATM 15 O O1A HEC . . . D 2 22.384 4.426 7.438 1 9.92 ? O1A HEC 105 B 1 HETATM 16 O O2A HEC . . . D 2 24.376 4.628 7.073 1 11.07 ? O2A HEC 105 B 1 HETATM 17 N NB HEC . . . D 2 27.717 6.776 15.333 1 16.38 ? NB HEC 105 B 1 HETATM 18 C C1B HEC . . . D 2 27.548 5.393 15.234 1 16.01 ? C1B HEC 105 B 1 HETATM 19 C C2B HEC . . . D 2 28.217 4.763 16.351 1 15.84 ? C2B HEC 105 B 1 HETATM 20 C C3B HEC . . . D 2 28.794 5.7 17.047 1 15.67 ? C3B HEC 105 B 1 HETATM 21 C C4B HEC . . . D 2 28.501 6.993 16.434 1 16.32 ? C4B HEC 105 B 1 HETATM 22 C CMB HEC . . . D 2 28.227 3.238 16.58 1 15.62 ? CMB HEC 105 B 1 HETATM 23 C CAB HEC . . . D 2 29.716 5.596 18.265 1 15.47 ? CAB HEC 105 B 1 HETATM 24 C CBB HEC . . . D 2 31.001 5.372 18.004 1 14.92 ? CBB HEC 105 B 1 HETATM 25 N NC HEC . . . D 2 27.253 9.529 15.599 1 16.33 ? NC HEC 105 B 1 HETATM 26 C C1C HEC . . . D 2 28.098 9.408 16.669 1 16.4 ? C1C HEC 105 B 1 HETATM 27 C C2C HEC . . . D 2 28.011 10.609 17.479 1 15.98 ? C2C HEC 105 B 1 HETATM 28 C C3C HEC . . . D 2 27.151 11.434 16.872 1 16.37 ? C3C HEC 105 B 1 HETATM 29 C C4C HEC . . . D 2 26.626 10.779 15.674 1 16.48 ? C4C HEC 105 B 1 HETATM 30 C CMC HEC . . . D 2 28.825 10.862 18.758 1 15.48 ? CMC HEC 105 B 1 HETATM 31 C CAC HEC . . . D 2 26.648 12.87 17.227 1 15.8 ? CAC HEC 105 B 1 HETATM 32 C CBC HEC . . . D 2 27.392 13.892 16.7 1 15.98 ? CBC HEC 105 B 1 HETATM 33 N ND HEC . . . D 2 25.9 9.605 13.077 1 16.5 ? ND HEC 105 B 1 HETATM 34 C C1D HEC . . . D 2 25.417 10.821 13.541 1 15.49 ? C1D HEC 105 B 1 HETATM 35 C C2D HEC . . . D 2 24.633 11.399 12.481 1 15.63 ? C2D HEC 105 B 1 HETATM 36 C C3D HEC . . . D 2 24.601 10.542 11.443 1 15.09 ? C3D HEC 105 B 1 HETATM 37 C C4D HEC . . . D 2 25.429 9.415 11.771 1 15.79 ? C4D HEC 105 B 1 HETATM 38 C CMD HEC . . . D 2 23.954 12.762 12.648 1 15.52 ? CMD HEC 105 B 1 HETATM 39 C CAD HEC . . . D 2 23.981 10.638 10.021 1 13.19 ? CAD HEC 105 B 1 HETATM 40 C CBD HEC . . . D 2 25.151 11.019 9.083 1 11.6 ? CBD HEC 105 B 1 HETATM 41 C CGD HEC . . . D 2 24.823 11.552 7.749 1 10.63 ? CGD HEC 105 B 1 HETATM 42 O O1D HEC . . . D 2 23.578 11.561 7.58 1 10.87 ? O1D HEC 105 B 1 HETATM 43 O O2D HEC . . . D 2 25.681 11.928 6.947 1 9.87 ? O2D HEC 105 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #