data_1CRG # _model_server_result.job_id PABBAyWdPDzd-B3CHJ37tw _model_server_result.datetime_utc '2024-11-06 01:46:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1crg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1CRG # _exptl.entry_id 1CRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CRG _cell.length_a 36.47 _cell.length_b 36.47 _cell.length_c 137.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1CRG _atom_sites.fract_transf_matrix[1][1] 0.02742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 117 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 109 109 HOH HOH . D 4 HOH A 2 110 110 HOH HOH . D 4 HOH A 3 113 113 HOH HOH . D 4 HOH A 4 121 121 HOH HOH . D 4 HOH A 5 125 125 HOH HOH . D 4 HOH A 6 126 126 HOH HOH . D 4 HOH A 7 130 130 HOH HOH . D 4 HOH A 8 131 131 HOH HOH . D 4 HOH A 9 132 132 HOH HOH . D 4 HOH A 10 134 134 HOH HOH . D 4 HOH A 11 136 136 HOH HOH . D 4 HOH A 12 138 138 HOH HOH . D 4 HOH A 13 141 141 HOH HOH . D 4 HOH A 14 145 145 HOH HOH . D 4 HOH A 15 149 149 HOH HOH . D 4 HOH A 16 151 151 HOH HOH . D 4 HOH A 17 153 153 HOH HOH . D 4 HOH A 18 156 156 HOH HOH . D 4 HOH A 19 158 158 HOH HOH . D 4 HOH A 20 159 159 HOH HOH . D 4 HOH A 21 164 164 HOH HOH . D 4 HOH A 22 167 167 HOH HOH . D 4 HOH A 23 168 168 HOH HOH . D 4 HOH A 24 172 172 HOH HOH . D 4 HOH A 25 174 174 HOH HOH . D 4 HOH A 26 189 189 HOH HOH . D 4 HOH A 27 191 191 HOH HOH . D 4 HOH A 28 196 196 HOH HOH . D 4 HOH A 29 197 197 HOH HOH . D 4 HOH A 30 198 198 HOH HOH . D 4 HOH A 31 204 204 HOH HOH . D 4 HOH A 32 208 208 HOH HOH . D 4 HOH A 33 209 209 HOH HOH . D 4 HOH A 34 215 215 HOH HOH . D 4 HOH A 35 219 219 HOH HOH . D 4 HOH A 36 221 221 HOH HOH . D 4 HOH A 37 300 300 HOH HOH . D 4 HOH A 38 301 301 HOH HOH . D 4 HOH A 39 302 302 HOH HOH . D 4 HOH A 40 303 303 HOH HOH . D 4 HOH A 41 304 304 HOH HOH . D 4 HOH A 42 305 305 HOH HOH . D 4 HOH A 43 306 306 HOH HOH . D 4 HOH A 44 307 307 HOH HOH . D 4 HOH A 45 308 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.96 21.032 13.036 1 10.76 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 5.211 18.643 14.083 1 8.13 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 4.153 20.825 9.928 1 6.8 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 0.339 22.9 11.976 1 5.11 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 2.25 21.841 16.263 1 4.5 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 4.448 19.961 12.181 1 9.18 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 5.247 18.975 12.762 1 7.88 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.935 18.304 11.741 1 8.14 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.662 18.888 10.529 1 9.25 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.743 19.933 10.799 1 9.56 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 6.232 18.426 9.174 1 7.8 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.892 17.074 11.949 1 6.39 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 8.311 17.758 12.152 1 9.51 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.58 17.045 12.354 1 5.24 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.501 17.74 12.831 1 7.77 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.564 15.827 12.025 1 9.67 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 2.306 21.647 11.286 1 6.82 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 3.064 21.602 10.119 1 5.93 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 2.345 22.352 9.099 1 6.95 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 1.279 22.929 9.657 1 5.96 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 1.268 22.54 11.07 1 4.97 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.825 22.433 7.65 1 7.22 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 0.204 23.769 9.017 1 5.56 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -0.587 23.062 7.862 1 7.47 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 1.532 22.067 13.95 1 5.49 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 0.551 22.8 13.35 1 5.1 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.202 23.509 14.308 1 7.35 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 0.3 23.232 15.517 1 7.9 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 1.436 22.351 15.301 1 6.47 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.438 24.463 13.966 1 6.3 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.095 23.844 16.879 1 8.54 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -1.491 23.855 17.434 1 10.8 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 3.619 20.353 14.846 1 7.15 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 3.196 20.811 16.064 1 7.18 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.891 20.106 17.095 1 5.61 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 4.694 19.217 16.478 1 6.09 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 4.481 19.321 15.072 1 6.52 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 3.685 20.27 18.639 1 4.23 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 5.592 18.158 17.154 1 5.37 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.773 16.872 17.363 1 8.73 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 5.323 15.828 18.209 1 10.19 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 6.438 16.118 18.75 1 16.06 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 4.726 14.746 18.329 1 11.74 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #