data_1CS4 # _model_server_result.job_id FSPnHrhEay4OA17S3AG-3g _model_server_result.datetime_utc '2024-11-23 03:44:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1cs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1082}' # _entry.id 1CS4 # _exptl.entry_id 1CS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.222 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXY-ADENOSINE 3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1CS4 _cell.length_a 118.5 _cell.length_b 134.5 _cell.length_c 71.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CS4 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 41 A ASP 396 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 A O ILE 42 A ILE 397 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A OD1 ASP 85 A ASP 440 1_555 D MG MG . A MG 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 D MG MG . A MG 581 1_555 G O2 POP . A POP 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 D MG MG . A MG 581 1_555 G O5 POP . A POP 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 D MG MG . A MG 581 1_555 H O1P 101 . B 101 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc7 C OG SER 54 C SER 54 1_555 J MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 C OG1 THR 204 C THR 204 1_555 J MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc9 J MG MG . C MG 396 1_555 L O2B GSP . C GSP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc10 J MG MG . C MG 396 1_555 L O2G GSP . C GSP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc11 J MG MG . C MG 396 1_555 O O HOH . C HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc12 J MG MG . C MG 396 1_555 O O HOH . C HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H14 N5 O6 P' _chem_comp.formula_weight 331.222 _chem_comp.id 101 _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXY-ADENOSINE 3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 101 doub 1 n n P O2P 101 sing 2 n n P O3P 101 sing 3 n n P O3' 101 sing 4 n n O2P HOP2 101 sing 5 n n O3P HOP3 101 sing 6 n n O5' C5' 101 sing 7 n n O5' HO5' 101 sing 8 n n C5' C4' 101 sing 9 n n C5' "H5'1" 101 sing 10 n n C5' "H5'2" 101 sing 11 n n C4' O4' 101 sing 12 n n C4' C3' 101 sing 13 n n C4' H4' 101 sing 14 n n O4' C1' 101 sing 15 n n C3' O3' 101 sing 16 n n C3' C2' 101 sing 17 n n C3' H3' 101 sing 18 n n C2' C1' 101 sing 19 n n C2' "H2'1" 101 sing 20 n n C2' "H2'2" 101 sing 21 n n C1' N9 101 sing 22 n n C1' H1' 101 sing 23 n n N9 C8 101 sing 24 n y N9 C4 101 sing 25 n y C8 N7 101 doub 26 n y C8 H8 101 sing 27 n n N7 C5 101 sing 28 n y C5 C6 101 sing 29 n y C5 C4 101 doub 30 n y C6 N6 101 sing 31 n n C6 N1 101 doub 32 n y N6 HN61 101 sing 33 n n N6 HN62 101 sing 34 n n N1 C2 101 sing 35 n y C2 N3 101 doub 36 n y C2 H2 101 sing 37 n n N3 C4 101 sing 38 n y # _atom_sites.entry_id 1CS4 _atom_sites.fract_transf_matrix[1][1] 0.008439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 581 397 MG MG . E 5 FOK A 1 1002 1002 FOK FOK . F 6 MES A 1 1003 1003 MES MES . G 7 POP A 1 1005 1005 POP POP . H 8 101 B 1 1082 1001 101 101 . I 6 MES B 1 1083 1004 MES MES . J 4 MG C 1 396 396 MG MG . K 9 CL C 1 398 398 CL CL . L 10 GSP C 1 1000 1000 GSP GSP . M 11 HOH A 1 11 11 HOH HOH . M 11 HOH A 2 20 20 HOH HOH . M 11 HOH A 3 23 23 HOH HOH . M 11 HOH A 4 24 24 HOH HOH . M 11 HOH A 5 30 30 HOH HOH . M 11 HOH A 6 31 31 HOH HOH . M 11 HOH A 7 33 33 HOH HOH . M 11 HOH A 8 57 57 HOH HOH . M 11 HOH A 9 59 59 HOH HOH . M 11 HOH A 10 61 61 HOH HOH . M 11 HOH A 11 82 82 HOH HOH . N 11 HOH B 1 8 8 HOH HOH . N 11 HOH B 2 9 9 HOH HOH . N 11 HOH B 3 12 12 HOH HOH . N 11 HOH B 4 13 13 HOH HOH . N 11 HOH B 5 14 14 HOH HOH . N 11 HOH B 6 15 15 HOH HOH . N 11 HOH B 7 16 16 HOH HOH . N 11 HOH B 8 17 17 HOH HOH . N 11 HOH B 9 18 18 HOH HOH . N 11 HOH B 10 19 19 HOH HOH . N 11 HOH B 11 21 21 HOH HOH . N 11 HOH B 12 22 22 HOH HOH . N 11 HOH B 13 25 25 HOH HOH . N 11 HOH B 14 26 26 HOH HOH . N 11 HOH B 15 27 27 HOH HOH . N 11 HOH B 16 28 28 HOH HOH . N 11 HOH B 17 32 32 HOH HOH . N 11 HOH B 18 34 34 HOH HOH . N 11 HOH B 19 35 35 HOH HOH . N 11 HOH B 20 36 36 HOH HOH . N 11 HOH B 21 37 37 HOH HOH . N 11 HOH B 22 38 38 HOH HOH . N 11 HOH B 23 54 54 HOH HOH . N 11 HOH B 24 55 55 HOH HOH . N 11 HOH B 25 56 56 HOH HOH . N 11 HOH B 26 58 58 HOH HOH . N 11 HOH B 27 60 60 HOH HOH . N 11 HOH B 28 62 62 HOH HOH . N 11 HOH B 29 63 63 HOH HOH . N 11 HOH B 30 67 67 HOH HOH . N 11 HOH B 31 78 78 HOH HOH . O 11 HOH C 1 1001 1 HOH HOH . O 11 HOH C 2 1002 2 HOH HOH . O 11 HOH C 3 1003 3 HOH HOH . O 11 HOH C 4 1004 4 HOH HOH . O 11 HOH C 5 1005 5 HOH HOH . O 11 HOH C 6 1006 7 HOH HOH . O 11 HOH C 7 1007 10 HOH HOH . O 11 HOH C 8 1008 29 HOH HOH . O 11 HOH C 9 1009 39 HOH HOH . O 11 HOH C 10 1010 40 HOH HOH . O 11 HOH C 11 1011 41 HOH HOH . O 11 HOH C 12 1012 42 HOH HOH . O 11 HOH C 13 1013 43 HOH HOH . O 11 HOH C 14 1014 44 HOH HOH . O 11 HOH C 15 1015 45 HOH HOH . O 11 HOH C 16 1016 46 HOH HOH . O 11 HOH C 17 1017 47 HOH HOH . O 11 HOH C 18 1018 48 HOH HOH . O 11 HOH C 19 1019 49 HOH HOH . O 11 HOH C 20 1020 50 HOH HOH . O 11 HOH C 21 1021 51 HOH HOH . O 11 HOH C 22 1022 52 HOH HOH . O 11 HOH C 23 1023 53 HOH HOH . O 11 HOH C 24 1024 64 HOH HOH . O 11 HOH C 25 1025 68 HOH HOH . O 11 HOH C 26 1026 69 HOH HOH . O 11 HOH C 27 1027 70 HOH HOH . O 11 HOH C 28 1028 71 HOH HOH . O 11 HOH C 29 1029 72 HOH HOH . O 11 HOH C 30 1030 73 HOH HOH . O 11 HOH C 31 1031 74 HOH HOH . O 11 HOH C 32 1032 75 HOH HOH . O 11 HOH C 33 1033 76 HOH HOH . O 11 HOH C 34 1034 77 HOH HOH . O 11 HOH C 35 1035 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 101 . . . H 8 55.023 -10.382 55.26 1 57.15 ? P 101 1082 B 1 HETATM 2 O O1P 101 . . . H 8 56.106 -9.96 56.176 1 56.63 ? O1P 101 1082 B 1 HETATM 3 O O2P 101 . . . H 8 53.931 -9.426 54.936 1 58.99 ? O2P 101 1082 B 1 HETATM 4 O O3P 101 . . . H 8 54.402 -11.615 55.816 1 57.14 ? O3P 101 1082 B 1 HETATM 5 O O5' 101 . . . H 8 59.69 -12.066 53.734 1 54.73 ? O5' 101 1082 B 1 HETATM 6 C C5' 101 . . . H 8 59.117 -11.254 52.717 1 49.2 ? C5' 101 1082 B 1 HETATM 7 C C4' 101 . . . H 8 57.649 -11.579 52.56 1 51.66 ? C4' 101 1082 B 1 HETATM 8 O O4' 101 . . . H 8 57.511 -12.868 51.904 1 46.96 ? O4' 101 1082 B 1 HETATM 9 C C3' 101 . . . H 8 56.88 -11.674 53.885 1 52.57 ? C3' 101 1082 B 1 HETATM 10 O O3' 101 . . . H 8 55.668 -10.9 53.867 1 56.54 ? O3' 101 1082 B 1 HETATM 11 C C2' 101 . . . H 8 56.575 -13.157 54.018 1 48.44 ? C2' 101 1082 B 1 HETATM 12 C C1' 101 . . . H 8 56.527 -13.631 52.575 1 45.63 ? C1' 101 1082 B 1 HETATM 13 N N9 101 . . . H 8 56.847 -15.055 52.418 1 43.32 ? N9 101 1082 B 1 HETATM 14 C C8 101 . . . H 8 58.041 -15.693 52.657 1 40.75 ? C8 101 1082 B 1 HETATM 15 N N7 101 . . . H 8 57.975 -16.998 52.536 1 39.17 ? N7 101 1082 B 1 HETATM 16 C C5 101 . . . H 8 56.656 -17.232 52.174 1 37.85 ? C5 101 1082 B 1 HETATM 17 C C6 101 . . . H 8 55.937 -18.421 51.936 1 39.27 ? C6 101 1082 B 1 HETATM 18 N N6 101 . . . H 8 56.471 -19.638 52.043 1 38.99 ? N6 101 1082 B 1 HETATM 19 N N1 101 . . . H 8 54.633 -18.31 51.581 1 36.43 ? N1 101 1082 B 1 HETATM 20 C C2 101 . . . H 8 54.099 -17.088 51.492 1 37.35 ? C2 101 1082 B 1 HETATM 21 N N3 101 . . . H 8 54.671 -15.898 51.709 1 38.82 ? N3 101 1082 B 1 HETATM 22 C C4 101 . . . H 8 55.961 -16.044 52.06 1 36.23 ? C4 101 1082 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 22 #